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Volumn 331, Issue 5, 2003, Pages 981-989

DNA looping and physical constraints on transcription regulation

Author keywords

Computational modeling; DNA looping; Gene expression; lac operon; Regulation

Indexed keywords

ARTICLE; BINDING SITE; DNA BINDING; DNA STRUCTURE; GENE EXPRESSION REGULATION; GENETIC VARIABILITY; LACTOSE OPERON; MATHEMATICAL MODEL; PRIORITY JOURNAL; REGULATORY MECHANISM; REPRESSOR GENE; TRANSCRIPTION REGULATION;

EID: 0042622638     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0022-2836(03)00764-2     Document Type: Article
Times cited : (164)

References (27)
  • 1
    • 54249116230 scopus 로고
    • Genetic regulatory mechanisms in the synthesis of proteins
    • Jacob F., Monod J. Genetic regulatory mechanisms in the synthesis of proteins. J. Mol. Biol. 3:1961;318-356.
    • (1961) J. Mol. Biol. , vol.3 , pp. 318-356
    • Jacob, F.1    Monod, J.2
  • 4
    • 0025343547 scopus 로고
    • The three operators of the lac operon cooperate in repression
    • Oehler S., Eismann E.R., Kramer H., Müller-Hill B. The three operators of the lac operon cooperate in repression. EMBO J. 9:1990;973-979.
    • (1990) EMBO J. , vol.9 , pp. 973-979
    • Oehler, S.1    Eismann, E.R.2    Kramer, H.3    Müller-Hill, B.4
  • 5
    • 0021188333 scopus 로고
    • An operator at -280 base pairs that is required for repression of araBAD operon promoter: Addition of DNA helical turns between the operator and promoter cyclically hinders repression
    • Dunn T.M., Hahn S., Ogden S., Schleif R.F. An operator at -280 base pairs that is required for repression of araBAD operon promoter: addition of DNA helical turns between the operator and promoter cyclically hinders repression. Proc. Natl Acad. Sci. USA. 81:1984;5017-5020.
    • (1984) Proc. Natl Acad. Sci. USA , vol.81 , pp. 5017-5020
    • Dunn, T.M.1    Hahn, S.2    Ogden, S.3    Schleif, R.F.4
  • 7
    • 0037022242 scopus 로고    scopus 로고
    • The lambda switch: Cl closes the gap in autoregulation
    • Hochschild A. The lambda switch: cl closes the gap in autoregulation. Curr. Biol. 12:2002;R87-R89.
    • (2002) Curr. Biol. , vol.12
    • Hochschild, A.1
  • 8
    • 0004211673 scopus 로고    scopus 로고
    • Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
    • Ptashne M., Gann A. Genes and Signals. 2002;Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (2002) Genes and Signals
    • Ptashne, M.1    Gann, A.2
  • 9
    • 0028365289 scopus 로고
    • Quality and position of the three lac operators of E. coli define efficiency of repression
    • Oehler S., Amouyal M., Kolkhof P., von Wilcken-Bergmann B., Müller-Hill B. Quality and position of the three lac operators of E. coli define efficiency of repression. EMBO J. 13:1994;3348-3355.
    • (1994) EMBO J. , vol.13 , pp. 3348-3355
    • Oehler, S.1    Amouyal, M.2    Kolkhof, P.3    Von Wilcken-Bergmann, B.4    Müller-Hill, B.5
  • 10
    • 0036220793 scopus 로고    scopus 로고
    • Binding and diffusion of CheR molecules within a cluster of membrane receptors
    • Levin M.D., Shimizu T.S., Bray D. Binding and diffusion of CheR molecules within a cluster of membrane receptors. Biophys. J. 82:2002;1809-1817.
    • (2002) Biophys. J. , vol.82 , pp. 1809-1817
    • Levin, M.D.1    Shimizu, T.S.2    Bray, D.3
  • 11
    • 0015101706 scopus 로고
    • Entropic contributions to rate accelerations in enzymic and intramolecular reactions and the chelate effect
    • Page M.I., Jencks W.P. Entropic contributions to rate accelerations in enzymic and intramolecular reactions and the chelate effect. Proc. Natl Acad. Sci. USA. 68:1971;1678-1683.
    • (1971) Proc. Natl Acad. Sci. USA , vol.68 , pp. 1678-1683
    • Page, M.I.1    Jencks, W.P.2
  • 13
    • 0027510369 scopus 로고
    • In vivo thermodynamic analysis of repression with and without looping in lac constructs
    • Law S.M., Bellomy G.R., Schlax P.J., Record M.T. Jr. In vivo thermodynamic analysis of repression with and without looping in lac constructs. J. Mol. Biol. 230:1993;161-173.
    • (1993) J. Mol. Biol. , vol.230 , pp. 161-173
    • Law, S.M.1    Bellomy, G.R.2    Schlax, P.J.3    Record M.T., Jr.4
  • 14
    • 0001422329 scopus 로고
    • Quantitative model for gene regulation by ( phage repressor
    • Ackers G.K., Johnson A.D., Shea M.A. Quantitative model for gene regulation by ( phage repressor. Proc. Natl Acad. Sci. USA. 79:1982;1129-1133.
    • (1982) Proc. Natl Acad. Sci. USA , vol.79 , pp. 1129-1133
    • Ackers, G.K.1    Johnson, A.D.2    Shea, M.A.3
  • 15
    • 0029975889 scopus 로고    scopus 로고
    • Repression of lac promoter as a function of distance, phase and quality of an auxiliary lac operator
    • Müller J., Oehler S., Müller-Hill B. Repression of lac promoter as a function of distance, phase and quality of an auxiliary lac operator. J. Mol. Biol. 257:1996;21-29.
    • (1996) J. Mol. Biol. , vol.257 , pp. 21-29
    • Müller, J.1    Oehler, S.2    Müller-Hill, B.3
  • 16
    • 0031871889 scopus 로고    scopus 로고
    • The function of auxiliary operators
    • Müller-Hill B. The function of auxiliary operators. Mol. Microbiol. 29:1998;13-18.
    • (1998) Mol. Microbiol. , vol.29 , pp. 13-18
    • Müller-Hill, B.1
  • 17
    • 0000599528 scopus 로고
    • Repressor recognition of operator and effectors
    • J.H. Miller, & W.S. Reznikoff. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
    • Barkley M.D., Bourgeois S. Repressor recognition of operator and effectors. Miller J.H., Reznikoff W.S. The Operon. 1980;177-220 Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1980) The Operon , pp. 177-220
    • Barkley, M.D.1    Bourgeois, S.2
  • 18
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Gillespie D.T. Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem. 81:1977;2340-2361.
    • (1977) J. Phys. Chem. , vol.81 , pp. 2340-2361
    • Gillespie, D.T.1
  • 19
    • 0002296942 scopus 로고
    • A new algorithm for Monte Carlo simulation of ising spin systems
    • Bortz A.B., Kalos M.H., Lebowitz J.L. A new algorithm for Monte Carlo simulation of ising spin systems. J. Comput. Phys. 17:1975;10-18.
    • (1975) J. Comput. Phys. , vol.17 , pp. 10-18
    • Bortz, A.B.1    Kalos, M.H.2    Lebowitz, J.L.3
  • 23
    • 0002433423 scopus 로고
    • How do genome-regulatory proteins locate their DNA target sites?
    • Berg O.G., Winter R.B., von Hippel P.H. How do genome-regulatory proteins locate their DNA target sites? Trends Biochem. Sci. 7:1982;52-55.
    • (1982) Trends Biochem. Sci. , vol.7 , pp. 52-55
    • Berg, O.G.1    Winter, R.B.2    Von Hippel, P.H.3
  • 24
    • 0037165942 scopus 로고    scopus 로고
    • Combinatorial synthesis of genetic networks
    • Guet C.C., Elowitz M.B., Hsing W.H., Leibler S. Combinatorial synthesis of genetic networks. Science. 296:2002;1466-1470.
    • (2002) Science , vol.296 , pp. 1466-1470
    • Guet, C.C.1    Elowitz, M.B.2    Hsing, W.H.3    Leibler, S.4
  • 25
    • 0034688173 scopus 로고    scopus 로고
    • A synthetic oscillatory network of transcriptional regulators
    • Elowitz M.B., Leibler S. A synthetic oscillatory network of transcriptional regulators. Nature. 403:2000;335-338.
    • (2000) Nature , vol.403 , pp. 335-338
    • Elowitz, M.B.1    Leibler, S.2
  • 26
    • 0000599528 scopus 로고
    • Repressor recognition of operator and effectors
    • J.H. Miller, & W.S. Reznikoff. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
    • Barkley M.D., Bourgeois S. Repressor recognition of operator and effectors. Miller J.H., Reznikoff W.S. The Operon. 1980;177-220 Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1980) The Operon , pp. 177-220
    • Barkley, M.D.1    Bourgeois, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.