CplexA: A Mathematica package to study macromolecular-assembly control of gene expression

Bioinformatics

Volumn 26, Issue 16, 2010, Pages 2060-2061

  Vilar, Jose M G ^a,b   Saiz, Leonor ^c  

^a UNIVERSITY OF THE BASQUE COUNTRY UPV EHU   (Spain)

^b BASQUE FOUNDATION FOR SCIENCE   (Spain)

^c University of California   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR;

ARTICLE; COMPUTER PROGRAM; GENE EXPRESSION; GENE EXPRESSION REGULATION; METABOLISM; PROMOTER REGION;

GENE EXPRESSION; GENE EXPRESSION REGULATION; PROMOTER REGIONS, GENETIC; SOFTWARE; TRANSCRIPTION FACTORS;

EID: 77955443147     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq328     Document Type: Article

References (8)

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3. Bray,D. and Lay,S. (1997) Computer-based analysis of the binding steps in protein complex formation. Proc. Natl Acad. Sci. USA, 94, 13493-13498.
4. Dodd,I.B. et al. (2004) Cooperativity in long-range gene regulation by the lambda CI repressor. Genes Dev., 18, 344-354.
5. Hlavacek,W.S. et al. (2006) Rules for modeling signal-transduction systems. Sci. STKE, 2006, re6.
6. Le Novere,N. and Shimizu,T.S. (2001) STOCHSIM: modelling of stochastic biomolecular processes. Bioinformatics, 17, 575-576.
7. Saiz,L. and Vilar,J.M.G. (2006) Stochastic dynamics of macromolecular-assembly networks. Mol. Syst. Biol., 2, 2006.0024.
8. Shapiro,B.E. et al. (2003) Cellerator: extending a computer algebra system to include biochemical arrows for signal transduction simulations. Bioinformatics, 19, 677-678.