메뉴 건너뛰기




Volumn 457, Issue 7226, 2009, Pages 215-218

Analysis of combinatorial cis-regulation in synthetic and genomic promoters

Author keywords

[No Author keywords available]

Indexed keywords

DNA; MIG1 PROTEIN; PROTEIN; RNA POLYMERASE; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

EID: 58149354385     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature07521     Document Type: Article
Times cited : (249)

References (28)
  • 1
    • 4544352942 scopus 로고    scopus 로고
    • Transcriptional regulatory code of a eukaryotic genome
    • Harbison, C. T. et al. Transcriptional regulatory code of a eukaryotic genome. Nature 431, 99-104 (2004).
    • (2004) Nature , vol.431 , pp. 99-104
    • Harbison, C.T.1
  • 2
    • 34247629588 scopus 로고    scopus 로고
    • Genetic reconstruction of a functional transcriptional regulatory network
    • Hu, Z., Killion, P. J. & Iyer, V. R. Genetic reconstruction of a functional transcriptional regulatory network. Nature Genet. 39, 683-687 (2007).
    • (2007) Nature Genet , vol.39 , pp. 683-687
    • Hu, Z.1    Killion, P.J.2    Iyer, V.R.3
  • 3
    • 1942453302 scopus 로고    scopus 로고
    • Predicting gene expression from sequence
    • Beer, M. A. & Tavazoie, S. Predicting gene expression from sequence. Cell 117, 185-198 (2004).
    • (2004) Cell , vol.117 , pp. 185-198
    • Beer, M.A.1    Tavazoie, S.2
  • 4
    • 0035135420 scopus 로고    scopus 로고
    • Regulatory element detection using correlation with expression
    • Bussemaker, H. J., Li, H. & Siggia, E. D. Regulatory element detection using correlation with expression. Nature Genet. 27, 167-171 (2001).
    • (2001) Nature Genet , vol.27 , pp. 167-171
    • Bussemaker, H.J.1    Li, H.2    Siggia, E.D.3
  • 5
    • 9244257298 scopus 로고    scopus 로고
    • Interacting models of cooperative gene regulation
    • Das, D., Banerjee, N. & Zhang, M. Q. Interacting models of cooperative gene regulation. Proc. Natl Acad. Sci. USA 101, 16234-16239 (2004).
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 16234-16239
    • Das, D.1    Banerjee, N.2    Zhang, M.Q.3
  • 6
    • 38749127589 scopus 로고    scopus 로고
    • Predicting expression patterns from regulatory sequence in Drosophila segmentation
    • Segal, E., Raveh-Sadka, T., Schroeder, M., Unnerstall, U. & Gaul, U. Predicting expression patterns from regulatory sequence in Drosophila segmentation. Nature 451, 535-540 (2008).
    • (2008) Nature , vol.451 , pp. 535-540
    • Segal, E.1    Raveh-Sadka, T.2    Schroeder, M.3    Unnerstall, U.4    Gaul, U.5
  • 7
    • 33745658106 scopus 로고    scopus 로고
    • Computational models for neurogenic gene expression in the Drosophila embryo
    • Zinzen, R. P., Senger, K., Levine, M. & Papatsenko, D. Computational models for neurogenic gene expression in the Drosophila embryo. Curr. Biol. 16, 1358-1365 (2006).
    • (2006) Curr. Biol , vol.16 , pp. 1358-1365
    • Zinzen, R.P.1    Senger, K.2    Levine, M.3    Papatsenko, D.4
  • 8
    • 34547925618 scopus 로고    scopus 로고
    • Combinatorial promoter design for engineering noisy gene expression
    • Murphy, K. F., Balazsi, G. & Collins, J. J. Combinatorial promoter design for engineering noisy gene expression. Proc. Natl Acad. Sci. USA 104, 12726-12731 (2007).
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 12726-12731
    • Murphy, K.F.1    Balazsi, G.2    Collins, J.J.3
  • 9
    • 33646203559 scopus 로고    scopus 로고
    • Gene expression from random libraries of yeast promoters
    • Ligr, M., Siddharthan, R., Cross, F. R. & Siggia, E. D. Gene expression from random libraries of yeast promoters. Genetics 172, 2113-2122 (2006).
    • (2006) Genetics , vol.172 , pp. 2113-2122
    • Ligr, M.1    Siddharthan, R.2    Cross, F.R.3    Siggia, E.D.4
  • 10
    • 36249017917 scopus 로고    scopus 로고
    • Programming gene expression with combinatorial promoters
    • Cox, R. S. III, Surette, M. G. & Elowitz, M. B. Programming gene expression with combinatorial promoters. Mol. Syst. Biol. 3, 145 (2007).
    • (2007) Mol. Syst. Biol , vol.3 , pp. 145
    • Cox III, R.S.1    Surette, M.G.2    Elowitz, M.B.3
  • 11
    • 0022429106 scopus 로고
    • The OR control system of bacteriophage lambda. A physical-chemical model for gene regulation
    • Shea, M. A. & Ackers, G. K. The OR control system of bacteriophage lambda. A physical-chemical model for gene regulation. J. Mol. Biol. 181, 211-230 (1985).
    • (1985) J. Mol. Biol , vol.181 , pp. 211-230
    • Shea, M.A.1    Ackers, G.K.2
  • 12
    • 0037965981 scopus 로고    scopus 로고
    • On schemes of combinatorial transcription logic
    • Buchler, N. E., Gerland, U. & Hwa, T. On schemes of combinatorial transcription logic. Proc. Natl Acad. Sci. USA 100, 5136-5141 (2003).
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 5136-5141
    • Buchler, N.E.1    Gerland, U.2    Hwa, T.3
  • 14
    • 33746691336 scopus 로고    scopus 로고
    • Extensive low-affinity transcriptional interactions in the yeast genome
    • Tanay, A. Extensive low-affinity transcriptional interactions in the yeast genome. Genome Res. 16, 962-972 (2006).
    • (2006) Genome Res , vol.16 , pp. 962-972
    • Tanay, A.1
  • 15
    • 0031761689 scopus 로고    scopus 로고
    • Characterization of three related glucose repressors and genes they regulate in Saccharomyces cerevisiae
    • Lutfiyya, L. L. et al. Characterization of three related glucose repressors and genes they regulate in Saccharomyces cerevisiae. Genetics 150, 1377-1391 (1998).
    • (1998) Genetics , vol.150 , pp. 1377-1391
    • Lutfiyya, L.L.1
  • 16
    • 0032826179 scopus 로고    scopus 로고
    • Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
    • Hertz, G. Z. & Stormo, G. D. Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics 15, 563-577 (1999).
    • (1999) Bioinformatics , vol.15 , pp. 563-577
    • Hertz, G.Z.1    Stormo, G.D.2
  • 17
    • 0037208166 scopus 로고    scopus 로고
    • TRANSFAC: Transcriptional regulation, from patterns to profiles
    • Matys, V. et al. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res. 31, 374-378 (2003).
    • (2003) Nucleic Acids Res , vol.31 , pp. 374-378
    • Matys, V.1
  • 18
    • 0025004155 scopus 로고
    • Yeast MIG1 repressor is related to the mammalian early growth response and Wilms' tumour finger proteins
    • Nehlin, J. O. & Ronne, H. Yeast MIG1 repressor is related to the mammalian early growth response and Wilms' tumour finger proteins. EMBO J. 9, 2891-2898 (1990).
    • (1990) EMBO J , vol.9 , pp. 2891-2898
    • Nehlin, J.O.1    Ronne, H.2
  • 19
    • 38549135468 scopus 로고    scopus 로고
    • YEASTRACT-DISCOVERER: New tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae
    • Monteiro, P. T. et al. YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae. Nucleic Acids Res. 36, D132-D136 (2008).
    • (2008) Nucleic Acids Res , vol.36
    • Monteiro, P.T.1
  • 20
    • 33644873683 scopus 로고    scopus 로고
    • The YEASTRACT database: A tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae
    • Teixeira, M. C. et al. The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae. Nucleic Acids Res. 34, D446-D451 (2006).
    • (2006) Nucleic Acids Res , vol.34
    • Teixeira, M.C.1
  • 21
    • 0030960672 scopus 로고    scopus 로고
    • Transcriptional activation by recruitment
    • Ptashne, M. & Gann, A. Transcriptional activation by recruitment. Nature 386, 569-577 (1997).
    • (1997) Nature , vol.386 , pp. 569-577
    • Ptashne, M.1    Gann, A.2
  • 22
    • 34347252686 scopus 로고    scopus 로고
    • Large-scale high-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method
    • Gietz, R. D. & Schiestl, R. H. Large-scale high-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method. Nature Protocols 2, 38-41 (2007).
    • (2007) Nature Protocols , vol.2 , pp. 38-41
    • Gietz, R.D.1    Schiestl, R.H.2
  • 23
    • 0032579440 scopus 로고    scopus 로고
    • Designer deletion strains derived from Saccharomyces cerevisiae S288C: A useful set of strains and plasmids for PCR-mediated gene disruption and other applications
    • Brachmann, C. B. et al. Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast 14, 115-132 (1998).
    • (1998) Yeast , vol.14 , pp. 115-132
    • Brachmann, C.B.1
  • 24
    • 1242300132 scopus 로고    scopus 로고
    • Regulatory network connecting two glucose signal transduction pathways in Saccharomyces cerevisiae
    • Kaniak, A., Xue, Z., Macool, D., Kim, J. H. & Johnston, M. Regulatory network connecting two glucose signal transduction pathways in Saccharomyces cerevisiae. Eukaryot. Cell 3, 221-231 (2004).
    • (2004) Eukaryot. Cell , vol.3 , pp. 221-231
    • Kaniak, A.1    Xue, Z.2    Macool, D.3    Kim, J.H.4    Johnston, M.5
  • 25
    • 84945517797 scopus 로고    scopus 로고
    • Gish, W. WU BLAST. 〈http://blast.wustl.edu〉 (1995-, 2008).
    • Gish, W. WU BLAST. 〈http://blast.wustl.edu〉 (1995-, 2008).
  • 26
    • 0038724989 scopus 로고    scopus 로고
    • Finding functional features in Saccharomyces genomes by phylogenetic footprinting
    • Cliften, P. et al. Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science 301, 71-76 (2003).
    • (2003) Science , vol.301 , pp. 71-76
    • Cliften, P.1
  • 27
    • 0032826179 scopus 로고    scopus 로고
    • Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
    • Hertz, G. Z. & Stormo, G. D. Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics 15, 563-577 (1999).
    • (1999) Bioinformatics , vol.15 , pp. 563-577
    • Hertz, G.Z.1    Stormo, G.D.2
  • 28
    • 0025004155 scopus 로고
    • Yeast MIG1 repressor is related to the mammalian early growth response and Wilms' tumour finger proteins
    • Nehlin, J. O. & Ronne, H. Yeast MIG1 repressor is related to the mammalian early growth response and Wilms' tumour finger proteins. EMBO J. 9, 2891-2898 (1990).
    • (1990) EMBO J , vol.9 , pp. 2891-2898
    • Nehlin, J.O.1    Ronne, H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.