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Volumn 8, Issue 10, 2013, Pages

Pseudomonas putida AlkA and AlkB Proteins Comprise Different Defense Systems for the Repair of Alkylation Damage to DNA - In Vivo, In Vitro, and In Silico Studies

Author keywords

[No Author keywords available]

Indexed keywords

ADA PROTEIN; ALKA GLYCOSYLASE; ALKB DIOXYGENASE; BACTERIAL DNA; BACTERIAL PROTEIN; MESYLIC ACID METHYL ESTER; METHYLNITRONITROSOGUANIDINE; UNCLASSIFIED DRUG;

EID: 84884850908     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0076198     Document Type: Article
Times cited : (12)

References (73)
  • 1
    • 0025288239 scopus 로고
    • Distribution of methyl and ethyl adducts following alkylation with monofunctional alkylating agents
    • doi: 10.1016/0027-5107(90)90173-2
    • Beranek DT, (1990) Distribution of methyl and ethyl adducts following alkylation with monofunctional alkylating agents. Mutat Res 231: 11-30. doi:10.1016/0027-5107(90)90173-2. PubMed: 2195323.
    • (1990) Mutat Res , vol.231 , pp. 11-30
    • Beranek, D.T.1
  • 2
    • 0020341190 scopus 로고
    • Nonenzymatic methylation of DNA by the intracellular methyl group donor S-adenosyl-L-methionine is a potentially mutagenic reaction
    • PubMed: 7188181
    • Rydberg B, Lindahl T, (1982) Nonenzymatic methylation of DNA by the intracellular methyl group donor S-adenosyl-L-methionine is a potentially mutagenic reaction. EMBO J 1: 211-216. PubMed: 7188181.
    • (1982) EMBO J , vol.1 , pp. 211-216
    • Rydberg, B.1    Lindahl, T.2
  • 3
    • 0029810398 scopus 로고    scopus 로고
    • Generation of an endogenous DNA-methylating agent by nitrosation in Escherichia coli
    • PubMed: 8752326
    • Taverna P, Sedgwick B, (1996) Generation of an endogenous DNA-methylating agent by nitrosation in Escherichia coli. J Bacteriol 178: 5105-5111. PubMed: 8752326.
    • (1996) J Bacteriol , vol.178 , pp. 5105-5111
    • Taverna, P.1    Sedgwick, B.2
  • 4
    • 0742305875 scopus 로고    scopus 로고
    • Repairing DNA-methylation damage
    • doi: 10.1038/nrm1312
    • Sedgwick B, (2004) Repairing DNA-methylation damage. Nat Rev Mol Cell Biol 5: 148-157. doi:10.1038/nrm1312. PubMed: 15040447.
    • (2004) Nat Rev Mol Cell Biol , vol.5 , pp. 148-157
    • Sedgwick, B.1
  • 5
    • 0023919219 scopus 로고
    • Regulation and expression of the adaptive response to alkylating agents
    • doi: 10.1146/annurev.bi.57.070188.001025
    • Lindahl T, Sedgwick B, Sekiguchi M, Nakabeppu Y, (1988) Regulation and expression of the adaptive response to alkylating agents. Annu Rev Biochem 57: 133-157. doi:10.1146/annurev.bi.57.070188.001025. PubMed: 3052269.
    • (1988) Annu Rev Biochem , vol.57 , pp. 133-157
    • Lindahl, T.1    Sedgwick, B.2    Sekiguchi, M.3    Nakabeppu, Y.4
  • 6
    • 0037115934 scopus 로고    scopus 로고
    • Recent progress on the Ada response for inducible repair of DNA alkylation damage
    • doi: 10.1038/sj.onc.1205998
    • Sedgwick B, Lindahl T, (2002) Recent progress on the Ada response for inducible repair of DNA alkylation damage. Oncogene 21: 8886-8894. doi:10.1038/sj.onc.1205998. PubMed: 12483506.
    • (2002) Oncogene , vol.21 , pp. 8886-8894
    • Sedgwick, B.1    Lindahl, T.2
  • 7
    • 0034462430 scopus 로고    scopus 로고
    • Regulatory responses of the adaptive response to alkylation damage: a simple regulon with complex regulatory features
    • doi: 10.1128/JB.182.23.6543-6549.2000
    • Landini P, Volkert MR, (2000) Regulatory responses of the adaptive response to alkylation damage: a simple regulon with complex regulatory features. J Bacteriol 182: 6543-6549. doi:10.1128/JB.182.23.6543-6549.2000. PubMed: 11073893.
    • (2000) J Bacteriol , vol.182 , pp. 6543-6549
    • Landini, P.1    Volkert, M.R.2
  • 8
    • 0023680954 scopus 로고
    • Activation of Ada protein as a transcriptional regulator by direct alkylation with methylating agents
    • PubMed: 2843522
    • Takahashi K, Kawazoe Y, Sakumi K, Nakabeppu Y, Sekiguchi M, (1988) Activation of Ada protein as a transcriptional regulator by direct alkylation with methylating agents. J Biol Chem 263: 13490-13492. PubMed: 2843522.
    • (1988) J Biol Chem , vol.263 , pp. 13490-13492
    • Takahashi, K.1    Kawazoe, Y.2    Sakumi, K.3    Nakabeppu, Y.4    Sekiguchi, M.5
  • 9
    • 0027985177 scopus 로고
    • The Ada protein acts as both a positive and a negative modulator of Escherichia coli's response to methylating agents
    • doi: 10.1073/pnas.91.21.9730
    • Saget BM, Walker GC, (1994) The Ada protein acts as both a positive and a negative modulator of Escherichia coli's response to methylating agents. Proc Natl Acad Sci U S A 91: 9730-9734. doi:10.1073/pnas.91.21.9730. PubMed: 7937881.
    • (1994) Proc Natl Acad Sci U S A , vol.91 , pp. 9730-9734
    • Saget, B.M.1    Walker, G.C.2
  • 10
    • 0345814007 scopus 로고    scopus 로고
    • Novel repair activities of AlkA (3-methyladenine DNA glycosylase II) and endonuclease VIII for xanthine and oxanine, guanine lesions induced by nitric oxide and nitrous acid
    • doi: 10.1093/nar/gkf630
    • Terato H, Masaoka A, Asagoshi K, Honsho A, Ohyama Y, et al. (2002) Novel repair activities of AlkA (3-methyladenine DNA glycosylase II) and endonuclease VIII for xanthine and oxanine, guanine lesions induced by nitric oxide and nitrous acid. Nucleic Acids Res 30: 4975-4984. doi:10.1093/nar/gkf630. PubMed: 12434002.
    • (2002) Nucleic Acids Res , vol.30 , pp. 4975-4984
    • Terato, H.1    Masaoka, A.2    Asagoshi, K.3    Honsho, A.4    Ohyama, Y.5
  • 11
    • 0029133553 scopus 로고
    • Escherichia coli, Saccharomyces cerevisiae, rat and human 3-methyladenine DNA glycosylases repair 1,N6-ethenoadenine when present in DNA
    • doi: 10.1093/nar/23.18.3750
    • Saparbaev M, Kleibl K, Laval J, (1995) Escherichia coli, Saccharomyces cerevisiae, rat and human 3-methyladenine DNA glycosylases repair 1,N6-ethenoadenine when present in DNA. Nucleic Acids Res 23: 3750-3755. doi:10.1093/nar/23.18.3750. PubMed: 7479006.
    • (1995) Nucleic Acids Res , vol.23 , pp. 3750-3755
    • Saparbaev, M.1    Kleibl, K.2    Laval, J.3
  • 12
    • 0032518911 scopus 로고    scopus 로고
    • Release of normal bases from intact DNA by a native DNA repair enzyme
    • doi: 10.1093/emboj/17.2.363
    • Berdal KG, Johansen RF, Seeberg E, (1998) Release of normal bases from intact DNA by a native DNA repair enzyme. Embo J 17: 363-367. doi:10.1093/emboj/17.2.363. PubMed: 9430628.
    • (1998) Embo J , vol.17 , pp. 363-367
    • Berdal, K.G.1    Johansen, R.F.2    Seeberg, E.3
  • 13
    • 34247269030 scopus 로고    scopus 로고
    • Structural basis for enzymatic excision of N1-methyladenine and N3-methylcytosine from DNA
    • doi: 10.1038/sj.emboj.7601662
    • Leiros I, Nabong MP, Grøsvik K, Ringvoll J, Haugland GT, et al. (2007) Structural basis for enzymatic excision of N1-methyladenine and N3-methylcytosine from DNA. EMBO J 26: 2206-2217. doi:10.1038/sj.emboj.7601662. PubMed: 17396151.
    • (2007) EMBO J , vol.26 , pp. 2206-2217
    • Leiros, I.1    Nabong, M.P.2    Grøsvik, K.3    Ringvoll, J.4    Haugland, G.T.5
  • 14
    • 84862161117 scopus 로고    scopus 로고
    • Structure-function studies of an unusual 3-methyladenine DNA glycosylase II (AlkA) from Deinococcus radiodurans
    • doi: 10.1107/S090744491200947X
    • Moe E, Hall DR, Leiros I, Monsen VT, Timmins J, et al. (2012) Structure-function studies of an unusual 3-methyladenine DNA glycosylase II (AlkA) from Deinococcus radiodurans. Acta Crystallogr D Biol Crystallogr 68: 703-712. doi:10.1107/S090744491200947X. PubMed: 22683793.
    • (2012) Acta Crystallogr D Biol Crystallogr , vol.68 , pp. 703-712
    • Moe, E.1    Hall, D.R.2    Leiros, I.3    Monsen, V.T.4    Timmins, J.5
  • 15
    • 0037068446 scopus 로고    scopus 로고
    • Oxidative demethylation by Escherichia coli AlkB directly reverts DNA base damage
    • doi: 10.1038/nature00908
    • Trewick SC, Henshaw TF, Hausinger RP, Lindahl T, Sedgwick B, (2002) Oxidative demethylation by Escherichia coli AlkB directly reverts DNA base damage. Nature 419: 174-178. doi:10.1038/nature00908. PubMed: 12226667.
    • (2002) Nature , vol.419 , pp. 174-178
    • Trewick, S.C.1    Henshaw, T.F.2    Hausinger, R.P.3    Lindahl, T.4    Sedgwick, B.5
  • 16
    • 0037068433 scopus 로고    scopus 로고
    • AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli
    • doi: 10.1038/nature01048
    • Falnes PO, Johansen RF, Seeberg E, (2002) AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli. Nature 419: 178-182. doi:10.1038/nature01048. PubMed: 12226668.
    • (2002) Nature , vol.419 , pp. 178-182
    • Falnes, P.O.1    Johansen, R.F.2    Seeberg, E.3
  • 17
    • 0035221419 scopus 로고    scopus 로고
    • The DNA-repair protein AlkB, EGL-9, and leprecan define new families of 2-oxoglutarate- and iron-dependent dioxygenases
    • PubMed: 11276424
    • Aravind L, Koonin EV, (2001) The DNA-repair protein AlkB, EGL-9, and leprecan define new families of 2-oxoglutarate- and iron-dependent dioxygenases. Genome Biol 2: RESEARCH0007. PubMed: 11276424.
    • (2001) Genome Biol , vol.2
    • Aravind, L.1    Koonin, E.V.2
  • 18
    • 0034664066 scopus 로고    scopus 로고
    • Defective processing of methylated single-stranded DNA by E. coli AlkB mutants
    • doi: 10950872
    • Dinglay S, Trewick SC, Lindahl T, Sedgwick B, (2000) Defective processing of methylated single-stranded DNA by E. coli AlkB mutants. Genes Dev 14: 2097-2105. PubMed: 10950872.
    • (2000) Genes Dev , vol.14 , pp. 2097-2105
    • Dinglay, S.1    Trewick, S.C.2    Lindahl, T.3    Sedgwick, B.4
  • 19
    • 35348910181 scopus 로고    scopus 로고
    • Bacterial DNA repair genes and their eukaryotic homologues: 3. AlkB dioxygenase and Ada methyltransferase in the direct repair of alkylated DNA
    • PubMed: 17823664
    • Nieminuszczy J, Grzesiuk E, (2007) Bacterial DNA repair genes and their eukaryotic homologues: 3. AlkB dioxygenase and Ada methyltransferase in the direct repair of alkylated DNA. Acta Biochim Pol 54: 459-468. PubMed: 17823664.
    • (2007) Acta Biochim Pol , vol.54 , pp. 459-468
    • Nieminuszczy, J.1    Grzesiuk, E.2
  • 20
    • 73949138246 scopus 로고    scopus 로고
    • Chloroacetaldehyde-induced mutagenesis in Escherichia coli: the role of AlkB protein in repair of 3,N(4)-ethenocytosine and 3,N(4)-alpha-hydroxyethanocytosine
    • Maciejewska AM, Ruszel KP, Nieminuszczy J, Lewicka J, Sokolowska B, et al. (2010) Chloroacetaldehyde-induced mutagenesis in Escherichia coli: the role of AlkB protein in repair of 3,N(4)-ethenocytosine and 3,N(4)-alpha-hydroxyethanocytosine. Mutat Res 684: 24-34.
    • (2010) Mutat Res , vol.684 , pp. 24-34
    • Maciejewska, A.M.1    Ruszel, K.P.2    Nieminuszczy, J.3    Lewicka, J.4    Sokolowska, B.5
  • 21
    • 79955400472 scopus 로고    scopus 로고
    • The role of AlkB protein in repair of 1,N(6)-ethenoadenine in Escherichia coli cells
    • doi: 10.1093/mutage/geq107
    • Maciejewska AM, Sokołowska B, Nowicki A, Kuśmierek JT, (2011) The role of AlkB protein in repair of 1,N(6)-ethenoadenine in Escherichia coli cells. Mutagenesis 26: 401-406. doi:10.1093/mutage/geq107. PubMed: 21193516.
    • (2011) Mutagenesis , vol.26 , pp. 401-406
    • Maciejewska, A.M.1    Sokołowska, B.2    Nowicki, A.3    Kuśmierek, J.T.4
  • 22
    • 84872056054 scopus 로고    scopus 로고
    • AlkB dioxygenase preferentially repairs protonated substrates: specificity against exocyclic adducts and molecular mechanism of action
    • doi: 10.1074/jbc.M112.353342
    • Maciejewska AM, Poznanski J, Kaczmarska Z, Krowisz B, Nieminuszczy J, et al. (2013) AlkB dioxygenase preferentially repairs protonated substrates: specificity against exocyclic adducts and molecular mechanism of action. J Biol Chem 288: 432-441. doi:10.1074/jbc.M112.353342. PubMed: 23148216.
    • (2013) J Biol Chem , vol.288 , pp. 432-441
    • Maciejewska, A.M.1    Poznanski, J.2    Kaczmarska, Z.3    Krowisz, B.4    Nieminuszczy, J.5
  • 23
    • 84856189266 scopus 로고    scopus 로고
    • Novel AlkB dioxygenases--alternative models for in silico and in vivo studies
    • doi: 10.1371/journal.pone.0030588
    • Mielecki D, Zugaj DL, Muszewska A, Piwowarski J, Chojnacka A, et al. (2012) Novel AlkB dioxygenases--alternative models for in silico and in vivo studies. PLOS ONE 7: e30588. doi:10.1371/journal.pone.0030588. PubMed: 22291995.
    • (2012) PLOS ONE , vol.7
    • Mielecki, D.1    Zugaj, D.L.2    Muszewska, A.3    Piwowarski, J.4    Chojnacka, A.5
  • 24
    • 9444278376 scopus 로고    scopus 로고
    • Phylogenomic identification of five new human homologs of the DNA repair enzyme AlkB
    • doi: 10.1186/1471-2164-4-48
    • Kurowski MA, Bhagwat AS, Papaj G, Bujnicki JM, (2003) Phylogenomic identification of five new human homologs of the DNA repair enzyme AlkB. BMC Genomics 4: 48. doi:10.1186/1471-2164-4-48. PubMed: 14667252.
    • (2003) BMC Genomics , vol.4 , pp. 48
    • Kurowski, M.A.1    Bhagwat, A.S.2    Papaj, G.3    Bujnicki, J.M.4
  • 25
    • 36749041363 scopus 로고    scopus 로고
    • The obesity-associated FTO gene encodes a 2-oxoglutarate-dependent nucleic acid demethylase
    • doi: 10.1126/science.1151710
    • Gerken T, Girard CA, Tung YC, Webby CJ, Saudek V, et al. (2007) The obesity-associated FTO gene encodes a 2-oxoglutarate-dependent nucleic acid demethylase. Science 318: 1469-1472. doi:10.1126/science.1151710. PubMed: 17991826.
    • (2007) Science , vol.318 , pp. 1469-1472
    • Gerken, T.1    Girard, C.A.2    Tung, Y.C.3    Webby, C.J.4    Saudek, V.5
  • 26
    • 80051812650 scopus 로고    scopus 로고
    • Preferential DNA damage prevention by the E. coli AidB gene: A new mechanism for the protection of specific genes
    • doi: 10.1016/j.dnarep.2011.06.001
    • Rippa V, Duilio A, di Pasquale P, Amoresano A, Landini P, et al. (2011) Preferential DNA damage prevention by the E. coli AidB gene: A new mechanism for the protection of specific genes. DNA Repair (Amst) 10: 934-941. doi:10.1016/j.dnarep.2011.06.001.
    • (2011) DNA Repair (Amst) , vol.10 , pp. 934-941
    • Rippa, V.1    Duilio, A.2    Di Pasquale, P.3    Amoresano, A.4    Landini, P.5
  • 27
    • 0019995020 scopus 로고
    • The metabolic versatility of pseudomonads
    • doi: 10.1007/BF00405197
    • Clarke PH, (1982) The metabolic versatility of pseudomonads. Antonie Van Leeuwenhoek 48: 105-130. doi:10.1007/BF00405197. PubMed: 6808915.
    • (1982) Antonie Van Leeuwenhoek , vol.48 , pp. 105-130
    • Clarke, P.H.1
  • 28
    • 0032795933 scopus 로고    scopus 로고
    • Bacteria designed for bioremediation
    • doi: 10322445
    • Timmis KN, Pieper DH, (1999) Bacteria designed for bioremediation. Trends Biotechnol 17: 200-204. PubMed: 10322445.
    • (1999) Trends Biotechnol , vol.17 , pp. 200-204
    • Timmis, K.N.1    Pieper, D.H.2
  • 29
    • 78651472662 scopus 로고    scopus 로고
    • Mechanisms of stationary-phase mutagenesis in bacteria: mutational processes in pseudomonads
    • doi: 10.1111/j.1574-6968.2010.02027.x
    • Kivisaar M, (2010) Mechanisms of stationary-phase mutagenesis in bacteria: mutational processes in pseudomonads. FEMS Microbiol Lett 312: 1-14. doi:10.1111/j.1574-6968.2010.02027.x. PubMed: 20572869.
    • (2010) FEMS Microbiol Lett , vol.312 , pp. 1-14
    • Kivisaar, M.1
  • 30
    • 25844499232 scopus 로고    scopus 로고
    • A methylation-dependent electrostatic switch controls DNA repair and transcriptional activation by E. coli ada
    • doi: 10.1016/j.molcel.2005.08.013
    • He C, Hus JC, Sun LJ, Zhou P, Norman DP, et al. (2005) A methylation-dependent electrostatic switch controls DNA repair and transcriptional activation by E. coli ada. Mol Cell 20: 117-129. doi:10.1016/j.molcel.2005.08.013. PubMed: 16209950.
    • (2005) Mol Cell , vol.20 , pp. 117-129
    • He, C.1    Hus, J.C.2    Sun, L.J.3    Zhou, P.4    Norman, D.P.5
  • 32
    • 0037456369 scopus 로고    scopus 로고
    • Human and bacterial oxidative demethylases repair alkylation damage in both RNA and DNA
    • doi: 10.1038/nature01363
    • Aas PA, Otterlei M, Falnes PO, Vågbø CB, Skorpen F, et al. (2003) Human and bacterial oxidative demethylases repair alkylation damage in both RNA and DNA. Nature 421: 859-863. doi:10.1038/nature01363. PubMed: 12594517.
    • (2003) Nature , vol.421 , pp. 859-863
    • Aas, P.A.1    Otterlei, M.2    Falnes, P.O.3    Vågbø, C.B.4    Skorpen, F.5
  • 33
    • 4944254870 scopus 로고    scopus 로고
    • AlkB restores the biological function of mRNA and tRNA inactivated by chemical methylation
    • doi: 10.1016/j.molcel.2004.09.002
    • Ougland R, Zhang CM, Liiv A, Johansen RF, Seeberg E, et al. (2004) AlkB restores the biological function of mRNA and tRNA inactivated by chemical methylation. Mol Cell 16: 107-116. doi:10.1016/j.molcel.2004.09.002. PubMed: 15469826.
    • (2004) Mol Cell , vol.16 , pp. 107-116
    • Ougland, R.1    Zhang, C.M.2    Liiv, A.3    Johansen, R.F.4    Seeberg, E.5
  • 34
    • 30344479466 scopus 로고    scopus 로고
    • AlkB dioxygenase in preventing MMS-induced mutagenesis in Escherichia coli: effect of Pol V and AlkA proteins
    • doi: 10.1016/j.dnarep.2005.09.007
    • Nieminuszczy J, Sikora A, Wrzesiński M, Janion C, Grzesiuk E, (2006) AlkB dioxygenase in preventing MMS-induced mutagenesis in Escherichia coli: effect of Pol V and AlkA proteins. DNA Repair (Amst) 5: 181-188. doi:10.1016/j.dnarep.2005.09.007. PubMed: 16226494.
    • (2006) DNA Repair (Amst) , vol.5 , pp. 181-188
    • Nieminuszczy, J.1    Sikora, A.2    Wrzesiński, M.3    Janion, C.4    Grzesiuk, E.5
  • 35
    • 73249116415 scopus 로고    scopus 로고
    • Mutagenic potency of MMS-induced 1meA/3meC lesions in E. coli
    • doi: 10.1002/em.20497
    • Nieminuszczy J, Mielecki D, Sikora A, Wrzesiński M, Chojnacka A, et al. (2009) Mutagenic potency of MMS-induced 1meA/3meC lesions in E. coli. Environ Mol Mutagen 50: 791-799. doi:10.1002/em.20497. PubMed: 19449394.
    • (2009) Environ Mol Mutagen , vol.50 , pp. 791-799
    • Nieminuszczy, J.1    Mielecki, D.2    Sikora, A.3    Wrzesiński, M.4    Chojnacka, A.5
  • 36
    • 34247625583 scopus 로고    scopus 로고
    • Study of involvement of ImuB and DnaE2 in stationary-phase mutagenesis in Pseudomonas putida
    • doi: 10.1016/j.dnarep.2007.01.010
    • Koorits L, Tegova R, Tark M, Tarassova K, Tover A, et al. (2007) Study of involvement of ImuB and DnaE2 in stationary-phase mutagenesis in Pseudomonas putida. DNA Repair (Amst) 6: 863-868. doi:10.1016/j.dnarep.2007.01.010. PubMed: 17331811.
    • (2007) DNA Repair (Amst) , vol.6 , pp. 863-868
    • Koorits, L.1    Tegova, R.2    Tark, M.3    Tarassova, K.4    Tover, A.5
  • 37
    • 4744339390 scopus 로고    scopus 로고
    • Widespread distribution of a lexA-regulated DNA damage-inducible multiple gene cassette in the Proteobacteria phylum
    • doi: 10.1111/j.1365-2958.2004.04260.x
    • Abella M, Erill I, Jara M, Mazón G, Campoy S, et al. (2004) Widespread distribution of a lexA-regulated DNA damage-inducible multiple gene cassette in the Proteobacteria phylum. Mol Microbiol 54: 212-222. doi:10.1111/j.1365-2958.2004.04260.x. PubMed: 15458417.
    • (2004) Mol Microbiol , vol.54 , pp. 212-222
    • Abella, M.1    Erill, I.2    Jara, M.3    Mazón, G.4    Campoy, S.5
  • 38
    • 31544453298 scopus 로고    scopus 로고
    • Dispersal and regulation of an adaptive mutagenesis cassette in the bacteria domain
    • doi: 10.1093/nar/gkl133
    • Erill I, Campoy S, Mazon G, Barbé J, (2006) Dispersal and regulation of an adaptive mutagenesis cassette in the bacteria domain. Nucleic Acids Res 34: 66-77. doi:10.1093/nar/gkl133. PubMed: 16407325.
    • (2006) Nucleic Acids Res , vol.34 , pp. 66-77
    • Erill, I.1    Campoy, S.2    Mazon, G.3    Barbé, J.4
  • 39
    • 0025719507 scopus 로고
    • Induction of the alkA gene of Escherichia coli in gram-negative bacteria
    • PubMed: 1938974
    • Fernandez de Henestrosa AR, Barbé J, (1991) Induction of the alkA gene of Escherichia coli in gram-negative bacteria. J Bacteriol 173: 7736-7740. PubMed: 1938974.
    • (1991) J Bacteriol , vol.173 , pp. 7736-7740
    • Fernandez de Henestrosa, A.R.1    Barbé, J.2
  • 40
    • 0025774096 scopus 로고
    • Widespread adaptive response against environmental methylating agents in microorganisms
    • doi: 10.1016/0027-5107(91)90178-Q
    • Sedgwick B, Vaughan P, (1991) Widespread adaptive response against environmental methylating agents in microorganisms. Mutat Res 250: 211-221. doi:10.1016/0027-5107(91)90178-Q. PubMed: 1944338.
    • (1991) Mutat Res , vol.250 , pp. 211-221
    • Sedgwick, B.1    Vaughan, P.2
  • 41
    • 0029166297 scopus 로고
    • Diverse capacities for the adaptive response to DNA alkylation in Bacillus species and strains
    • doi: 10.1016/0921-8777(95)00013-A
    • Morhoshi F, Munakata N, (1995) Diverse capacities for the adaptive response to DNA alkylation in Bacillus species and strains. Mutat Res 337: 97-110. doi:10.1016/0921-8777(95)00013-A. PubMed: 7565865.
    • (1995) Mutat Res , vol.337 , pp. 97-110
    • Morhoshi, F.1    Munakata, N.2
  • 42
    • 0025738009 scopus 로고
    • Cloning and characterization of the Salmonella typhimurium ada gene, which encodes O6-methylguanine-DNA methyltransferase
    • PubMed: 1904855
    • Hakura A, Morimoto K, Sofuni T, Nohmi T, (1991) Cloning and characterization of the Salmonella typhimurium ada gene, which encodes O6-methylguanine-DNA methyltransferase. J Bacteriol 173: 3663-3672. PubMed: 1904855.
    • (1991) J Bacteriol , vol.173 , pp. 3663-3672
    • Hakura, A.1    Morimoto, K.2    Sofuni, T.3    Nohmi, T.4
  • 43
    • 0022470742 scopus 로고
    • The intracellular signal for induction of resistance to alkylating agents in E. coli
    • doi: 10.1016/0092-8674(86)90396-X
    • Teo I, Sedgwick B, Kilpatrick MW, McCarthy TV, Lindahl T, (1986) The intracellular signal for induction of resistance to alkylating agents in E. coli. Cell 45: 315-324. doi:10.1016/0092-8674(86)90396-X. PubMed: 3009022.
    • (1986) Cell , vol.45 , pp. 315-324
    • Teo, I.1    Sedgwick, B.2    Kilpatrick, M.W.3    McCarthy, T.V.4    Lindahl, T.5
  • 44
    • 0025607112 scopus 로고
    • Positive and negative regulation of transcription by a cleavage product of Ada protein
    • doi: 10.1016/S0022-2836(05)80318-3
    • Akimaru H, Sakumi K, Yoshikai T, Anai M, Sekiguchi M, (1990) Positive and negative regulation of transcription by a cleavage product of Ada protein. J Mol Biol 216: 261-273. doi:10.1016/S0022-2836(05)80318-3. PubMed: 2254928.
    • (1990) J Mol Biol , vol.216 , pp. 261-273
    • Akimaru, H.1    Sakumi, K.2    Yoshikai, T.3    Anai, M.4    Sekiguchi, M.5
  • 45
    • 0032557574 scopus 로고    scopus 로고
    • Ada protein-RNA polymerase sigma subunit interaction and alpha subunit-promoter DNA interaction are necessary at different steps in transcription initiation at the Escherichia coli ada and aidB promoters
    • doi: 10.1074/jbc.273.21.13307
    • Landini P, Bown JA, Volkert MR, Busby SJ, (1998) Ada protein-RNA polymerase sigma subunit interaction and alpha subunit-promoter DNA interaction are necessary at different steps in transcription initiation at the Escherichia coli ada and aidB promoters. J Biol Chem 273: 13307-13312. doi:10.1074/jbc.273.21.13307. PubMed: 9582376.
    • (1998) J Biol Chem , vol.273 , pp. 13307-13312
    • Landini, P.1    Bown, J.A.2    Volkert, M.R.3    Busby, S.J.4
  • 46
    • 0028905277 scopus 로고
    • Transcriptional activation of the Escherichia coli adaptive response gene aidB is mediated by binding of methylated Ada protein. Evidence for a new consensus sequence for Ada-binding sites
    • doi: 10.1074/jbc.270.14.8285
    • Landini P, Volkert MR, (1995) Transcriptional activation of the Escherichia coli adaptive response gene aidB is mediated by binding of methylated Ada protein. Evidence for a new consensus sequence for Ada-binding sites. J Biol Chem 270: 8285-8289. doi:10.1074/jbc.270.14.8285. PubMed: 7713936.
    • (1995) J Biol Chem , vol.270 , pp. 8285-8289
    • Landini, P.1    Volkert, M.R.2
  • 48
    • 0004078614 scopus 로고
    • New York: Interscience Publishers Inc
    • Adams MH, (1959) Bacteriophages. New York: Interscience Publishers Inc.
    • (1959) Bacteriophages
    • Adams, M.H.1
  • 49
    • 77049313195 scopus 로고
    • Acetylornithinase of Escherichia coli: partial purification and some properties
    • PubMed: 13278318
    • Vogel HJ, Bonner DM, (1956) Acetylornithinase of Escherichia coli: partial purification and some properties. J Biol Chem 218: 97-106. PubMed: 13278318.
    • (1956) J Biol Chem , vol.218 , pp. 97-106
    • Vogel, H.J.1    Bonner, D.M.2
  • 50
    • 0029665023 scopus 로고    scopus 로고
    • Preparation of electrocompetent E. coli using salt-free growth medium
    • PubMed: 8770403
    • Sharma RC, Schimke RT, (1996) Preparation of electrocompetent E. coli using salt-free growth medium. BioTechniques 20: 42-44. PubMed: 8770403.
    • (1996) BioTechniques , vol.20 , pp. 42-44
    • Sharma, R.C.1    Schimke, R.T.2
  • 51
    • 32244448730 scopus 로고    scopus 로고
    • A 10-min method for preparation of highly electrocompetent Pseudomonas aeruginosa cells: application for DNA fragment transfer between chromosomes and plasmid transformation
    • doi: 10.1016/j.mimet.2005.06.001
    • Choi KH, Kumar A, Schweizer HP, (2006) A 10-min method for preparation of highly electrocompetent Pseudomonas aeruginosa cells: application for DNA fragment transfer between chromosomes and plasmid transformation. J Microbiol Methods 64: 391-397. doi:10.1016/j.mimet.2005.06.001. PubMed: 15987659.
    • (2006) J Microbiol Methods , vol.64 , pp. 391-397
    • Choi, K.H.1    Kumar, A.2    Schweizer, H.P.3
  • 52
    • 0025047590 scopus 로고
    • Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria
    • PubMed: 2172216
    • Herrero M, de Lorenzo V, Timmis KN, (1990) Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria. J Bacteriol 172: 6557-6567. PubMed: 2172216.
    • (1990) J Bacteriol , vol.172 , pp. 6557-6567
    • Herrero, M.1    de Lorenzo, V.2    Timmis, K.N.3
  • 53
    • 0014674485 scopus 로고
    • A complementation analysis of the restriction and modification of DNA in Escherichia coli
    • doi: 10.1016/0022-2836(69)90288-5
    • Boyer HW, Roulland-Dussoix D, (1969) A complementation analysis of the restriction and modification of DNA in Escherichia coli. J Mol Biol 41: 459-472. doi:10.1016/0022-2836(69)90288-5. PubMed: 4896022.
    • (1969) J Mol Biol , vol.41 , pp. 459-472
    • Boyer, H.W.1    Roulland-Dussoix, D.2
  • 54
    • 0000527903 scopus 로고
    • Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans
    • doi: 10.1073/pnas.76.4.1648
    • Figurski DH, Helinski DR, (1979) Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans. Proc Natl Acad Sci U S A 76: 1648-1652. doi:10.1073/pnas.76.4.1648. PubMed: 377280.
    • (1979) Proc Natl Acad Sci U S A , vol.76 , pp. 1648-1652
    • Figurski, D.H.1    Helinski, D.R.2
  • 55
    • 0017374604 scopus 로고
    • Two modes of loss of the Tol function from Pseudomonas putida mt-2
    • doi: 10.1007/BF00330838
    • Bayley SA, Duggleby CJ, Worsey MJ, Williams PA, Hardy KG, et al. (1977) Two modes of loss of the Tol function from Pseudomonas putida mt-2. Mol Gen Genet 154: 203-204. doi:10.1007/BF00330838. PubMed: 895716.
    • (1977) Mol Gen Genet , vol.154 , pp. 203-204
    • Bayley, S.A.1    Duggleby, C.J.2    Worsey, M.J.3    Williams, P.A.4    Hardy, K.G.5
  • 56
    • 0036937473 scopus 로고    scopus 로고
    • Pedigree and taxonomic credentials of Pseudomonas putida strain KT2440
    • doi: 10.1046/j.1462-2920.2002.00368.x
    • Regenhardt D, Heuer H, Heim S, Fernandez DU, Strömpl C, et al. (2002) Pedigree and taxonomic credentials of Pseudomonas putida strain KT2440. Environ Microbiol 4: 912-915. doi:10.1046/j.1462-2920.2002.00368.x. PubMed: 12534472.
    • (2002) Environ Microbiol , vol.4 , pp. 912-915
    • Regenhardt, D.1    Heuer, H.2    Heim, S.3    Fernandez, D.U.4    Strömpl, C.5
  • 57
    • 0027938931 scopus 로고
    • An aromatic effector specificity mutant of the transcriptional regulator DmpR overcomes the growth constraints of Pseudomonas sp. strain CF600 on para-substituted methylphenols
    • PubMed: 8002579
    • Pavel H, Forsman M, Shingler V, (1994) An aromatic effector specificity mutant of the transcriptional regulator DmpR overcomes the growth constraints of Pseudomonas sp. strain CF600 on para-substituted methylphenols. J Bacteriol 176: 7550-7557. PubMed: 8002579.
    • (1994) J Bacteriol , vol.176 , pp. 7550-7557
    • Pavel, H.1    Forsman, M.2    Shingler, V.3
  • 58
    • 0035004274 scopus 로고    scopus 로고
    • A panel of Tn7-based vectors for insertion of the gfp marker gene or for delivery of cloned DNA into Gram-negative bacteria at a neutral chromosomal site
    • doi: 10.1016/S0167-7012(01)00246-9
    • Koch B, Jensen LE, Nybroe O, (2001) A panel of Tn7-based vectors for insertion of the gfp marker gene or for delivery of cloned DNA into Gram-negative bacteria at a neutral chromosomal site. J Microbiol Methods 45: 187-195. doi:10.1016/S0167-7012(01)00246-9. PubMed: 11348676.
    • (2001) J Microbiol Methods , vol.45 , pp. 187-195
    • Koch, B.1    Jensen, L.E.2    Nybroe, O.3
  • 59
    • 0025195680 scopus 로고
    • Mini-Tn5 transposon derivatives for insertion mutagenesis, promoter probing, and chromosomal insertion of cloned DNA in gram-negative eubacteria
    • PubMed: 2172217
    • de Lorenzo V, Herrero M, Jakubzik U, Timmis KN, (1990) Mini-Tn5 transposon derivatives for insertion mutagenesis, promoter probing, and chromosomal insertion of cloned DNA in gram-negative eubacteria. J Bacteriol 172: 6568-6572. PubMed: 2172217.
    • (1990) J Bacteriol , vol.172 , pp. 6568-6572
    • de Lorenzo, V.1    Herrero, M.2    Jakubzik, U.3    Timmis, K.N.4
  • 60
    • 7644220468 scopus 로고    scopus 로고
    • The ColR-ColS two-component signal transduction system is involved in regulation of Tn4652 transposition in Pseudomonas putida under starvation conditions
    • doi: 10.1111/j.1365-2958.2004.04311.x
    • Hõrak R, Ilves H, Pruunsild P, Kuljus M, Kivisaar M, (2004) The ColR-ColS two-component signal transduction system is involved in regulation of Tn4652 transposition in Pseudomonas putida under starvation conditions. Mol Microbiol 54: 795-807. doi:10.1111/j.1365-2958.2004.04311.x. PubMed: 15491368.
    • (2004) Mol Microbiol , vol.54 , pp. 795-807
    • Hõrak, R.1    Ilves, H.2    Pruunsild, P.3    Kuljus, M.4    Kivisaar, M.5
  • 61
    • 80053648189 scopus 로고    scopus 로고
    • Engineering multiple genomic deletions in Gram-negative bacteria: analysis of the multi-resistant antibiotic profile of Pseudomonas putida KT2440
    • doi: 10.1111/j.1462-2920.2011.02538.x
    • Martínez-García E, de Lorenzo V, (2011) Engineering multiple genomic deletions in Gram-negative bacteria: analysis of the multi-resistant antibiotic profile of Pseudomonas putida KT2440. Environ Microbiol 13: 2702-2716. doi:10.1111/j.1462-2920.2011.02538.x. PubMed: 21883790.
    • (2011) Environ Microbiol , vol.13 , pp. 2702-2716
    • Martínez-García, E.1    de Lorenzo, V.2
  • 62
    • 0034730128 scopus 로고    scopus 로고
    • Genetic footprinting with mariner-based transposition in Pseudomonas aeruginosa
    • doi: 10.1073/pnas.97.18.10191
    • Wong SM, Mekalanos JJ, (2000) Genetic footprinting with mariner-based transposition in Pseudomonas aeruginosa. Proc Natl Acad Sci U S A 97: 10191-10196. doi:10.1073/pnas.97.18.10191. PubMed: 10963681.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 10191-10196
    • Wong, S.M.1    Mekalanos, J.J.2
  • 63
    • 0033735452 scopus 로고    scopus 로고
    • Improved gfp and inaZ broad-host-range promoter-probe vectors
    • doi: 10.1094/MPMI.2000.13.11.1243
    • Miller WG, Leveau JH, Lindow SE, (2000) Improved gfp and inaZ broad-host-range promoter-probe vectors. Mol Plant Microbe Interact 13: 1243-1250. doi:10.1094/MPMI.2000.13.11.1243. PubMed: 11059491.
    • (2000) Mol Plant Microbe Interact , vol.13 , pp. 1243-1250
    • Miller, W.G.1    Leveau, J.H.2    Lindow, S.E.3
  • 64
    • 0036933705 scopus 로고    scopus 로고
    • Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440
    • doi: 10.1046/j.1462-2920.2002.00366.x
    • Nelson KE, Weinel C, Paulsen IT, Dodson RJ, Hilbert H, et al. (2002) Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environ Microbiol 4: 799-808. doi:10.1046/j.1462-2920.2002.00366.x. PubMed: 12534463.
    • (2002) Environ Microbiol , vol.4 , pp. 799-808
    • Nelson, K.E.1    Weinel, C.2    Paulsen, I.T.3    Dodson, R.J.4    Hilbert, H.5
  • 65
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • doi: 10.1093/nar/25.17.3389
    • Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402. doi:10.1093/nar/25.17.3389. PubMed: 9254694.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schäffer, A.A.3    Zhang, J.4    Zhang, Z.5
  • 66
    • 78651285748 scopus 로고    scopus 로고
    • CDD: a Conserved Domain Database for the functional annotation of proteins
    • doi: 10.1093/nar/gkq1189
    • Marchler-Bauer A, Lu S, Anderson JB, Chitsaz F, Derbyshire MK, et al. (2011) CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res 39: D225-D229. doi:10.1093/nar/gkq1189. PubMed: 21109532.
    • (2011) Nucleic Acids Res , vol.39
    • Marchler-Bauer, A.1    Lu, S.2    Anderson, J.B.3    Chitsaz, F.4    Derbyshire, M.K.5
  • 67
    • 10044222704 scopus 로고    scopus 로고
    • CLANS: a Java application for visualizing protein families based on pairwise similarity
    • doi: 10.1093/bioinformatics/bth444
    • Frickey T, Lupas A, (2004) CLANS: a Java application for visualizing protein families based on pairwise similarity. Bioinformatics 20: 3702-3704. doi:10.1093/bioinformatics/bth444. PubMed: 15284097.
    • (2004) Bioinformatics , vol.20 , pp. 3702-3704
    • Frickey, T.1    Lupas, A.2
  • 68
  • 69
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • PubMed: 7584402
    • Bailey TL, Elkan C, (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol 2: 28-36. PubMed: 7584402.
    • (1994) Proc Int Conf Intell Syst Mol Biol , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 70
    • 79953300078 scopus 로고    scopus 로고
    • FIMO: scanning for occurrences of a given motif
    • doi: 10.1093/bioinformatics/btr064
    • Grant CE, Bailey TL, Noble WS, (2011) FIMO: scanning for occurrences of a given motif. Bioinformatics 27: 1017-1018. doi:10.1093/bioinformatics/btr064. PubMed: 21330290.
    • (2011) Bioinformatics , vol.27 , pp. 1017-1018
    • Grant, C.E.1    Bailey, T.L.2    Noble, W.S.3
  • 72
    • 0026748369 scopus 로고
    • Oxidation of methylhydrazines to mutagenic methylating derivatives and inducers of the adaptive response of Escherichia coli to alkylation damage
    • PubMed: 1617641
    • Sedgwick B, (1992) Oxidation of methylhydrazines to mutagenic methylating derivatives and inducers of the adaptive response of Escherichia coli to alkylation damage. Cancer Res 52: 3693-3697. PubMed: 1617641.
    • (1992) Cancer Res , vol.52 , pp. 3693-3697
    • Sedgwick, B.1
  • 73
    • 0029760025 scopus 로고    scopus 로고
    • Contribution of ogt-encoded alkyltransferase to resistance to chloroethylnitrosoureas in nucleotide excision repair-deficient Escherichia coli
    • doi: 10.1093/carcin/17.8.1609
    • Abril N, Ferrezuelo F, Prieto-Alamo MJ, Rafferty JA, Margison GP, et al. (1996) Contribution of ogt-encoded alkyltransferase to resistance to chloroethylnitrosoureas in nucleotide excision repair-deficient Escherichia coli. Carcinogenesis 17: 1609-1614. doi:10.1093/carcin/17.8.1609. PubMed: 8761416.
    • (1996) Carcinogenesis , vol.17 , pp. 1609-1614
    • Abril, N.1    Ferrezuelo, F.2    Prieto-Alamo, M.J.3    Rafferty, J.A.4    Margison, G.P.5


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