-
1
-
-
0025288239
-
Distribution of methyl and ethyl adducts following alkylation with monofunctional alkylating agents
-
doi: 10.1016/0027-5107(90)90173-2
-
Beranek DT, (1990) Distribution of methyl and ethyl adducts following alkylation with monofunctional alkylating agents. Mutat Res 231: 11-30. doi:10.1016/0027-5107(90)90173-2. PubMed: 2195323.
-
(1990)
Mutat Res
, vol.231
, pp. 11-30
-
-
Beranek, D.T.1
-
2
-
-
0020341190
-
Nonenzymatic methylation of DNA by the intracellular methyl group donor S-adenosyl-L-methionine is a potentially mutagenic reaction
-
PubMed: 7188181
-
Rydberg B, Lindahl T, (1982) Nonenzymatic methylation of DNA by the intracellular methyl group donor S-adenosyl-L-methionine is a potentially mutagenic reaction. EMBO J 1: 211-216. PubMed: 7188181.
-
(1982)
EMBO J
, vol.1
, pp. 211-216
-
-
Rydberg, B.1
Lindahl, T.2
-
3
-
-
0029810398
-
Generation of an endogenous DNA-methylating agent by nitrosation in Escherichia coli
-
PubMed: 8752326
-
Taverna P, Sedgwick B, (1996) Generation of an endogenous DNA-methylating agent by nitrosation in Escherichia coli. J Bacteriol 178: 5105-5111. PubMed: 8752326.
-
(1996)
J Bacteriol
, vol.178
, pp. 5105-5111
-
-
Taverna, P.1
Sedgwick, B.2
-
4
-
-
0742305875
-
Repairing DNA-methylation damage
-
doi: 10.1038/nrm1312
-
Sedgwick B, (2004) Repairing DNA-methylation damage. Nat Rev Mol Cell Biol 5: 148-157. doi:10.1038/nrm1312. PubMed: 15040447.
-
(2004)
Nat Rev Mol Cell Biol
, vol.5
, pp. 148-157
-
-
Sedgwick, B.1
-
5
-
-
0023919219
-
Regulation and expression of the adaptive response to alkylating agents
-
doi: 10.1146/annurev.bi.57.070188.001025
-
Lindahl T, Sedgwick B, Sekiguchi M, Nakabeppu Y, (1988) Regulation and expression of the adaptive response to alkylating agents. Annu Rev Biochem 57: 133-157. doi:10.1146/annurev.bi.57.070188.001025. PubMed: 3052269.
-
(1988)
Annu Rev Biochem
, vol.57
, pp. 133-157
-
-
Lindahl, T.1
Sedgwick, B.2
Sekiguchi, M.3
Nakabeppu, Y.4
-
6
-
-
0037115934
-
Recent progress on the Ada response for inducible repair of DNA alkylation damage
-
doi: 10.1038/sj.onc.1205998
-
Sedgwick B, Lindahl T, (2002) Recent progress on the Ada response for inducible repair of DNA alkylation damage. Oncogene 21: 8886-8894. doi:10.1038/sj.onc.1205998. PubMed: 12483506.
-
(2002)
Oncogene
, vol.21
, pp. 8886-8894
-
-
Sedgwick, B.1
Lindahl, T.2
-
7
-
-
0034462430
-
Regulatory responses of the adaptive response to alkylation damage: a simple regulon with complex regulatory features
-
doi: 10.1128/JB.182.23.6543-6549.2000
-
Landini P, Volkert MR, (2000) Regulatory responses of the adaptive response to alkylation damage: a simple regulon with complex regulatory features. J Bacteriol 182: 6543-6549. doi:10.1128/JB.182.23.6543-6549.2000. PubMed: 11073893.
-
(2000)
J Bacteriol
, vol.182
, pp. 6543-6549
-
-
Landini, P.1
Volkert, M.R.2
-
8
-
-
0023680954
-
Activation of Ada protein as a transcriptional regulator by direct alkylation with methylating agents
-
PubMed: 2843522
-
Takahashi K, Kawazoe Y, Sakumi K, Nakabeppu Y, Sekiguchi M, (1988) Activation of Ada protein as a transcriptional regulator by direct alkylation with methylating agents. J Biol Chem 263: 13490-13492. PubMed: 2843522.
-
(1988)
J Biol Chem
, vol.263
, pp. 13490-13492
-
-
Takahashi, K.1
Kawazoe, Y.2
Sakumi, K.3
Nakabeppu, Y.4
Sekiguchi, M.5
-
9
-
-
0027985177
-
The Ada protein acts as both a positive and a negative modulator of Escherichia coli's response to methylating agents
-
doi: 10.1073/pnas.91.21.9730
-
Saget BM, Walker GC, (1994) The Ada protein acts as both a positive and a negative modulator of Escherichia coli's response to methylating agents. Proc Natl Acad Sci U S A 91: 9730-9734. doi:10.1073/pnas.91.21.9730. PubMed: 7937881.
-
(1994)
Proc Natl Acad Sci U S A
, vol.91
, pp. 9730-9734
-
-
Saget, B.M.1
Walker, G.C.2
-
10
-
-
0345814007
-
Novel repair activities of AlkA (3-methyladenine DNA glycosylase II) and endonuclease VIII for xanthine and oxanine, guanine lesions induced by nitric oxide and nitrous acid
-
doi: 10.1093/nar/gkf630
-
Terato H, Masaoka A, Asagoshi K, Honsho A, Ohyama Y, et al. (2002) Novel repair activities of AlkA (3-methyladenine DNA glycosylase II) and endonuclease VIII for xanthine and oxanine, guanine lesions induced by nitric oxide and nitrous acid. Nucleic Acids Res 30: 4975-4984. doi:10.1093/nar/gkf630. PubMed: 12434002.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 4975-4984
-
-
Terato, H.1
Masaoka, A.2
Asagoshi, K.3
Honsho, A.4
Ohyama, Y.5
-
11
-
-
0029133553
-
Escherichia coli, Saccharomyces cerevisiae, rat and human 3-methyladenine DNA glycosylases repair 1,N6-ethenoadenine when present in DNA
-
doi: 10.1093/nar/23.18.3750
-
Saparbaev M, Kleibl K, Laval J, (1995) Escherichia coli, Saccharomyces cerevisiae, rat and human 3-methyladenine DNA glycosylases repair 1,N6-ethenoadenine when present in DNA. Nucleic Acids Res 23: 3750-3755. doi:10.1093/nar/23.18.3750. PubMed: 7479006.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 3750-3755
-
-
Saparbaev, M.1
Kleibl, K.2
Laval, J.3
-
12
-
-
0032518911
-
Release of normal bases from intact DNA by a native DNA repair enzyme
-
doi: 10.1093/emboj/17.2.363
-
Berdal KG, Johansen RF, Seeberg E, (1998) Release of normal bases from intact DNA by a native DNA repair enzyme. Embo J 17: 363-367. doi:10.1093/emboj/17.2.363. PubMed: 9430628.
-
(1998)
Embo J
, vol.17
, pp. 363-367
-
-
Berdal, K.G.1
Johansen, R.F.2
Seeberg, E.3
-
13
-
-
34247269030
-
Structural basis for enzymatic excision of N1-methyladenine and N3-methylcytosine from DNA
-
doi: 10.1038/sj.emboj.7601662
-
Leiros I, Nabong MP, Grøsvik K, Ringvoll J, Haugland GT, et al. (2007) Structural basis for enzymatic excision of N1-methyladenine and N3-methylcytosine from DNA. EMBO J 26: 2206-2217. doi:10.1038/sj.emboj.7601662. PubMed: 17396151.
-
(2007)
EMBO J
, vol.26
, pp. 2206-2217
-
-
Leiros, I.1
Nabong, M.P.2
Grøsvik, K.3
Ringvoll, J.4
Haugland, G.T.5
-
14
-
-
84862161117
-
Structure-function studies of an unusual 3-methyladenine DNA glycosylase II (AlkA) from Deinococcus radiodurans
-
doi: 10.1107/S090744491200947X
-
Moe E, Hall DR, Leiros I, Monsen VT, Timmins J, et al. (2012) Structure-function studies of an unusual 3-methyladenine DNA glycosylase II (AlkA) from Deinococcus radiodurans. Acta Crystallogr D Biol Crystallogr 68: 703-712. doi:10.1107/S090744491200947X. PubMed: 22683793.
-
(2012)
Acta Crystallogr D Biol Crystallogr
, vol.68
, pp. 703-712
-
-
Moe, E.1
Hall, D.R.2
Leiros, I.3
Monsen, V.T.4
Timmins, J.5
-
15
-
-
0037068446
-
Oxidative demethylation by Escherichia coli AlkB directly reverts DNA base damage
-
doi: 10.1038/nature00908
-
Trewick SC, Henshaw TF, Hausinger RP, Lindahl T, Sedgwick B, (2002) Oxidative demethylation by Escherichia coli AlkB directly reverts DNA base damage. Nature 419: 174-178. doi:10.1038/nature00908. PubMed: 12226667.
-
(2002)
Nature
, vol.419
, pp. 174-178
-
-
Trewick, S.C.1
Henshaw, T.F.2
Hausinger, R.P.3
Lindahl, T.4
Sedgwick, B.5
-
16
-
-
0037068433
-
AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli
-
doi: 10.1038/nature01048
-
Falnes PO, Johansen RF, Seeberg E, (2002) AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli. Nature 419: 178-182. doi:10.1038/nature01048. PubMed: 12226668.
-
(2002)
Nature
, vol.419
, pp. 178-182
-
-
Falnes, P.O.1
Johansen, R.F.2
Seeberg, E.3
-
17
-
-
0035221419
-
The DNA-repair protein AlkB, EGL-9, and leprecan define new families of 2-oxoglutarate- and iron-dependent dioxygenases
-
PubMed: 11276424
-
Aravind L, Koonin EV, (2001) The DNA-repair protein AlkB, EGL-9, and leprecan define new families of 2-oxoglutarate- and iron-dependent dioxygenases. Genome Biol 2: RESEARCH0007. PubMed: 11276424.
-
(2001)
Genome Biol
, vol.2
-
-
Aravind, L.1
Koonin, E.V.2
-
18
-
-
0034664066
-
Defective processing of methylated single-stranded DNA by E. coli AlkB mutants
-
doi: 10950872
-
Dinglay S, Trewick SC, Lindahl T, Sedgwick B, (2000) Defective processing of methylated single-stranded DNA by E. coli AlkB mutants. Genes Dev 14: 2097-2105. PubMed: 10950872.
-
(2000)
Genes Dev
, vol.14
, pp. 2097-2105
-
-
Dinglay, S.1
Trewick, S.C.2
Lindahl, T.3
Sedgwick, B.4
-
19
-
-
35348910181
-
Bacterial DNA repair genes and their eukaryotic homologues: 3. AlkB dioxygenase and Ada methyltransferase in the direct repair of alkylated DNA
-
PubMed: 17823664
-
Nieminuszczy J, Grzesiuk E, (2007) Bacterial DNA repair genes and their eukaryotic homologues: 3. AlkB dioxygenase and Ada methyltransferase in the direct repair of alkylated DNA. Acta Biochim Pol 54: 459-468. PubMed: 17823664.
-
(2007)
Acta Biochim Pol
, vol.54
, pp. 459-468
-
-
Nieminuszczy, J.1
Grzesiuk, E.2
-
20
-
-
73949138246
-
Chloroacetaldehyde-induced mutagenesis in Escherichia coli: the role of AlkB protein in repair of 3,N(4)-ethenocytosine and 3,N(4)-alpha-hydroxyethanocytosine
-
Maciejewska AM, Ruszel KP, Nieminuszczy J, Lewicka J, Sokolowska B, et al. (2010) Chloroacetaldehyde-induced mutagenesis in Escherichia coli: the role of AlkB protein in repair of 3,N(4)-ethenocytosine and 3,N(4)-alpha-hydroxyethanocytosine. Mutat Res 684: 24-34.
-
(2010)
Mutat Res
, vol.684
, pp. 24-34
-
-
Maciejewska, A.M.1
Ruszel, K.P.2
Nieminuszczy, J.3
Lewicka, J.4
Sokolowska, B.5
-
21
-
-
79955400472
-
The role of AlkB protein in repair of 1,N(6)-ethenoadenine in Escherichia coli cells
-
doi: 10.1093/mutage/geq107
-
Maciejewska AM, Sokołowska B, Nowicki A, Kuśmierek JT, (2011) The role of AlkB protein in repair of 1,N(6)-ethenoadenine in Escherichia coli cells. Mutagenesis 26: 401-406. doi:10.1093/mutage/geq107. PubMed: 21193516.
-
(2011)
Mutagenesis
, vol.26
, pp. 401-406
-
-
Maciejewska, A.M.1
Sokołowska, B.2
Nowicki, A.3
Kuśmierek, J.T.4
-
22
-
-
84872056054
-
AlkB dioxygenase preferentially repairs protonated substrates: specificity against exocyclic adducts and molecular mechanism of action
-
doi: 10.1074/jbc.M112.353342
-
Maciejewska AM, Poznanski J, Kaczmarska Z, Krowisz B, Nieminuszczy J, et al. (2013) AlkB dioxygenase preferentially repairs protonated substrates: specificity against exocyclic adducts and molecular mechanism of action. J Biol Chem 288: 432-441. doi:10.1074/jbc.M112.353342. PubMed: 23148216.
-
(2013)
J Biol Chem
, vol.288
, pp. 432-441
-
-
Maciejewska, A.M.1
Poznanski, J.2
Kaczmarska, Z.3
Krowisz, B.4
Nieminuszczy, J.5
-
23
-
-
84856189266
-
Novel AlkB dioxygenases--alternative models for in silico and in vivo studies
-
doi: 10.1371/journal.pone.0030588
-
Mielecki D, Zugaj DL, Muszewska A, Piwowarski J, Chojnacka A, et al. (2012) Novel AlkB dioxygenases--alternative models for in silico and in vivo studies. PLOS ONE 7: e30588. doi:10.1371/journal.pone.0030588. PubMed: 22291995.
-
(2012)
PLOS ONE
, vol.7
-
-
Mielecki, D.1
Zugaj, D.L.2
Muszewska, A.3
Piwowarski, J.4
Chojnacka, A.5
-
24
-
-
9444278376
-
Phylogenomic identification of five new human homologs of the DNA repair enzyme AlkB
-
doi: 10.1186/1471-2164-4-48
-
Kurowski MA, Bhagwat AS, Papaj G, Bujnicki JM, (2003) Phylogenomic identification of five new human homologs of the DNA repair enzyme AlkB. BMC Genomics 4: 48. doi:10.1186/1471-2164-4-48. PubMed: 14667252.
-
(2003)
BMC Genomics
, vol.4
, pp. 48
-
-
Kurowski, M.A.1
Bhagwat, A.S.2
Papaj, G.3
Bujnicki, J.M.4
-
25
-
-
36749041363
-
The obesity-associated FTO gene encodes a 2-oxoglutarate-dependent nucleic acid demethylase
-
doi: 10.1126/science.1151710
-
Gerken T, Girard CA, Tung YC, Webby CJ, Saudek V, et al. (2007) The obesity-associated FTO gene encodes a 2-oxoglutarate-dependent nucleic acid demethylase. Science 318: 1469-1472. doi:10.1126/science.1151710. PubMed: 17991826.
-
(2007)
Science
, vol.318
, pp. 1469-1472
-
-
Gerken, T.1
Girard, C.A.2
Tung, Y.C.3
Webby, C.J.4
Saudek, V.5
-
26
-
-
80051812650
-
Preferential DNA damage prevention by the E. coli AidB gene: A new mechanism for the protection of specific genes
-
doi: 10.1016/j.dnarep.2011.06.001
-
Rippa V, Duilio A, di Pasquale P, Amoresano A, Landini P, et al. (2011) Preferential DNA damage prevention by the E. coli AidB gene: A new mechanism for the protection of specific genes. DNA Repair (Amst) 10: 934-941. doi:10.1016/j.dnarep.2011.06.001.
-
(2011)
DNA Repair (Amst)
, vol.10
, pp. 934-941
-
-
Rippa, V.1
Duilio, A.2
Di Pasquale, P.3
Amoresano, A.4
Landini, P.5
-
27
-
-
0019995020
-
The metabolic versatility of pseudomonads
-
doi: 10.1007/BF00405197
-
Clarke PH, (1982) The metabolic versatility of pseudomonads. Antonie Van Leeuwenhoek 48: 105-130. doi:10.1007/BF00405197. PubMed: 6808915.
-
(1982)
Antonie Van Leeuwenhoek
, vol.48
, pp. 105-130
-
-
Clarke, P.H.1
-
28
-
-
0032795933
-
Bacteria designed for bioremediation
-
doi: 10322445
-
Timmis KN, Pieper DH, (1999) Bacteria designed for bioremediation. Trends Biotechnol 17: 200-204. PubMed: 10322445.
-
(1999)
Trends Biotechnol
, vol.17
, pp. 200-204
-
-
Timmis, K.N.1
Pieper, D.H.2
-
29
-
-
78651472662
-
Mechanisms of stationary-phase mutagenesis in bacteria: mutational processes in pseudomonads
-
doi: 10.1111/j.1574-6968.2010.02027.x
-
Kivisaar M, (2010) Mechanisms of stationary-phase mutagenesis in bacteria: mutational processes in pseudomonads. FEMS Microbiol Lett 312: 1-14. doi:10.1111/j.1574-6968.2010.02027.x. PubMed: 20572869.
-
(2010)
FEMS Microbiol Lett
, vol.312
, pp. 1-14
-
-
Kivisaar, M.1
-
30
-
-
25844499232
-
A methylation-dependent electrostatic switch controls DNA repair and transcriptional activation by E. coli ada
-
doi: 10.1016/j.molcel.2005.08.013
-
He C, Hus JC, Sun LJ, Zhou P, Norman DP, et al. (2005) A methylation-dependent electrostatic switch controls DNA repair and transcriptional activation by E. coli ada. Mol Cell 20: 117-129. doi:10.1016/j.molcel.2005.08.013. PubMed: 16209950.
-
(2005)
Mol Cell
, vol.20
, pp. 117-129
-
-
He, C.1
Hus, J.C.2
Sun, L.J.3
Zhou, P.4
Norman, D.P.5
-
31
-
-
34447317515
-
Alkyltransferase-like proteins
-
doi: 10.1016/j.dnarep.2007.03.014
-
Margison GP, Butt A, Pearson SJ, Wharton S, Watson AJ, et al. (2007) Alkyltransferase-like proteins. DNA Repair (Amst) 6: 1222-1228. doi:10.1016/j.dnarep.2007.03.014. PubMed: 17500045.
-
(2007)
DNA Repair (Amst)
, vol.6
, pp. 1222-1228
-
-
Margison, G.P.1
Butt, A.2
Pearson, S.J.3
Wharton, S.4
Watson, A.J.5
-
32
-
-
0037456369
-
Human and bacterial oxidative demethylases repair alkylation damage in both RNA and DNA
-
doi: 10.1038/nature01363
-
Aas PA, Otterlei M, Falnes PO, Vågbø CB, Skorpen F, et al. (2003) Human and bacterial oxidative demethylases repair alkylation damage in both RNA and DNA. Nature 421: 859-863. doi:10.1038/nature01363. PubMed: 12594517.
-
(2003)
Nature
, vol.421
, pp. 859-863
-
-
Aas, P.A.1
Otterlei, M.2
Falnes, P.O.3
Vågbø, C.B.4
Skorpen, F.5
-
33
-
-
4944254870
-
AlkB restores the biological function of mRNA and tRNA inactivated by chemical methylation
-
doi: 10.1016/j.molcel.2004.09.002
-
Ougland R, Zhang CM, Liiv A, Johansen RF, Seeberg E, et al. (2004) AlkB restores the biological function of mRNA and tRNA inactivated by chemical methylation. Mol Cell 16: 107-116. doi:10.1016/j.molcel.2004.09.002. PubMed: 15469826.
-
(2004)
Mol Cell
, vol.16
, pp. 107-116
-
-
Ougland, R.1
Zhang, C.M.2
Liiv, A.3
Johansen, R.F.4
Seeberg, E.5
-
34
-
-
30344479466
-
AlkB dioxygenase in preventing MMS-induced mutagenesis in Escherichia coli: effect of Pol V and AlkA proteins
-
doi: 10.1016/j.dnarep.2005.09.007
-
Nieminuszczy J, Sikora A, Wrzesiński M, Janion C, Grzesiuk E, (2006) AlkB dioxygenase in preventing MMS-induced mutagenesis in Escherichia coli: effect of Pol V and AlkA proteins. DNA Repair (Amst) 5: 181-188. doi:10.1016/j.dnarep.2005.09.007. PubMed: 16226494.
-
(2006)
DNA Repair (Amst)
, vol.5
, pp. 181-188
-
-
Nieminuszczy, J.1
Sikora, A.2
Wrzesiński, M.3
Janion, C.4
Grzesiuk, E.5
-
35
-
-
73249116415
-
Mutagenic potency of MMS-induced 1meA/3meC lesions in E. coli
-
doi: 10.1002/em.20497
-
Nieminuszczy J, Mielecki D, Sikora A, Wrzesiński M, Chojnacka A, et al. (2009) Mutagenic potency of MMS-induced 1meA/3meC lesions in E. coli. Environ Mol Mutagen 50: 791-799. doi:10.1002/em.20497. PubMed: 19449394.
-
(2009)
Environ Mol Mutagen
, vol.50
, pp. 791-799
-
-
Nieminuszczy, J.1
Mielecki, D.2
Sikora, A.3
Wrzesiński, M.4
Chojnacka, A.5
-
36
-
-
34247625583
-
Study of involvement of ImuB and DnaE2 in stationary-phase mutagenesis in Pseudomonas putida
-
doi: 10.1016/j.dnarep.2007.01.010
-
Koorits L, Tegova R, Tark M, Tarassova K, Tover A, et al. (2007) Study of involvement of ImuB and DnaE2 in stationary-phase mutagenesis in Pseudomonas putida. DNA Repair (Amst) 6: 863-868. doi:10.1016/j.dnarep.2007.01.010. PubMed: 17331811.
-
(2007)
DNA Repair (Amst)
, vol.6
, pp. 863-868
-
-
Koorits, L.1
Tegova, R.2
Tark, M.3
Tarassova, K.4
Tover, A.5
-
37
-
-
4744339390
-
Widespread distribution of a lexA-regulated DNA damage-inducible multiple gene cassette in the Proteobacteria phylum
-
doi: 10.1111/j.1365-2958.2004.04260.x
-
Abella M, Erill I, Jara M, Mazón G, Campoy S, et al. (2004) Widespread distribution of a lexA-regulated DNA damage-inducible multiple gene cassette in the Proteobacteria phylum. Mol Microbiol 54: 212-222. doi:10.1111/j.1365-2958.2004.04260.x. PubMed: 15458417.
-
(2004)
Mol Microbiol
, vol.54
, pp. 212-222
-
-
Abella, M.1
Erill, I.2
Jara, M.3
Mazón, G.4
Campoy, S.5
-
38
-
-
31544453298
-
Dispersal and regulation of an adaptive mutagenesis cassette in the bacteria domain
-
doi: 10.1093/nar/gkl133
-
Erill I, Campoy S, Mazon G, Barbé J, (2006) Dispersal and regulation of an adaptive mutagenesis cassette in the bacteria domain. Nucleic Acids Res 34: 66-77. doi:10.1093/nar/gkl133. PubMed: 16407325.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 66-77
-
-
Erill, I.1
Campoy, S.2
Mazon, G.3
Barbé, J.4
-
39
-
-
0025719507
-
Induction of the alkA gene of Escherichia coli in gram-negative bacteria
-
PubMed: 1938974
-
Fernandez de Henestrosa AR, Barbé J, (1991) Induction of the alkA gene of Escherichia coli in gram-negative bacteria. J Bacteriol 173: 7736-7740. PubMed: 1938974.
-
(1991)
J Bacteriol
, vol.173
, pp. 7736-7740
-
-
Fernandez de Henestrosa, A.R.1
Barbé, J.2
-
40
-
-
0025774096
-
Widespread adaptive response against environmental methylating agents in microorganisms
-
doi: 10.1016/0027-5107(91)90178-Q
-
Sedgwick B, Vaughan P, (1991) Widespread adaptive response against environmental methylating agents in microorganisms. Mutat Res 250: 211-221. doi:10.1016/0027-5107(91)90178-Q. PubMed: 1944338.
-
(1991)
Mutat Res
, vol.250
, pp. 211-221
-
-
Sedgwick, B.1
Vaughan, P.2
-
41
-
-
0029166297
-
Diverse capacities for the adaptive response to DNA alkylation in Bacillus species and strains
-
doi: 10.1016/0921-8777(95)00013-A
-
Morhoshi F, Munakata N, (1995) Diverse capacities for the adaptive response to DNA alkylation in Bacillus species and strains. Mutat Res 337: 97-110. doi:10.1016/0921-8777(95)00013-A. PubMed: 7565865.
-
(1995)
Mutat Res
, vol.337
, pp. 97-110
-
-
Morhoshi, F.1
Munakata, N.2
-
42
-
-
0025738009
-
Cloning and characterization of the Salmonella typhimurium ada gene, which encodes O6-methylguanine-DNA methyltransferase
-
PubMed: 1904855
-
Hakura A, Morimoto K, Sofuni T, Nohmi T, (1991) Cloning and characterization of the Salmonella typhimurium ada gene, which encodes O6-methylguanine-DNA methyltransferase. J Bacteriol 173: 3663-3672. PubMed: 1904855.
-
(1991)
J Bacteriol
, vol.173
, pp. 3663-3672
-
-
Hakura, A.1
Morimoto, K.2
Sofuni, T.3
Nohmi, T.4
-
43
-
-
0022470742
-
The intracellular signal for induction of resistance to alkylating agents in E. coli
-
doi: 10.1016/0092-8674(86)90396-X
-
Teo I, Sedgwick B, Kilpatrick MW, McCarthy TV, Lindahl T, (1986) The intracellular signal for induction of resistance to alkylating agents in E. coli. Cell 45: 315-324. doi:10.1016/0092-8674(86)90396-X. PubMed: 3009022.
-
(1986)
Cell
, vol.45
, pp. 315-324
-
-
Teo, I.1
Sedgwick, B.2
Kilpatrick, M.W.3
McCarthy, T.V.4
Lindahl, T.5
-
44
-
-
0025607112
-
Positive and negative regulation of transcription by a cleavage product of Ada protein
-
doi: 10.1016/S0022-2836(05)80318-3
-
Akimaru H, Sakumi K, Yoshikai T, Anai M, Sekiguchi M, (1990) Positive and negative regulation of transcription by a cleavage product of Ada protein. J Mol Biol 216: 261-273. doi:10.1016/S0022-2836(05)80318-3. PubMed: 2254928.
-
(1990)
J Mol Biol
, vol.216
, pp. 261-273
-
-
Akimaru, H.1
Sakumi, K.2
Yoshikai, T.3
Anai, M.4
Sekiguchi, M.5
-
45
-
-
0032557574
-
Ada protein-RNA polymerase sigma subunit interaction and alpha subunit-promoter DNA interaction are necessary at different steps in transcription initiation at the Escherichia coli ada and aidB promoters
-
doi: 10.1074/jbc.273.21.13307
-
Landini P, Bown JA, Volkert MR, Busby SJ, (1998) Ada protein-RNA polymerase sigma subunit interaction and alpha subunit-promoter DNA interaction are necessary at different steps in transcription initiation at the Escherichia coli ada and aidB promoters. J Biol Chem 273: 13307-13312. doi:10.1074/jbc.273.21.13307. PubMed: 9582376.
-
(1998)
J Biol Chem
, vol.273
, pp. 13307-13312
-
-
Landini, P.1
Bown, J.A.2
Volkert, M.R.3
Busby, S.J.4
-
46
-
-
0028905277
-
Transcriptional activation of the Escherichia coli adaptive response gene aidB is mediated by binding of methylated Ada protein. Evidence for a new consensus sequence for Ada-binding sites
-
doi: 10.1074/jbc.270.14.8285
-
Landini P, Volkert MR, (1995) Transcriptional activation of the Escherichia coli adaptive response gene aidB is mediated by binding of methylated Ada protein. Evidence for a new consensus sequence for Ada-binding sites. J Biol Chem 270: 8285-8289. doi:10.1074/jbc.270.14.8285. PubMed: 7713936.
-
(1995)
J Biol Chem
, vol.270
, pp. 8285-8289
-
-
Landini, P.1
Volkert, M.R.2
-
48
-
-
0004078614
-
-
New York: Interscience Publishers Inc
-
Adams MH, (1959) Bacteriophages. New York: Interscience Publishers Inc.
-
(1959)
Bacteriophages
-
-
Adams, M.H.1
-
49
-
-
77049313195
-
Acetylornithinase of Escherichia coli: partial purification and some properties
-
PubMed: 13278318
-
Vogel HJ, Bonner DM, (1956) Acetylornithinase of Escherichia coli: partial purification and some properties. J Biol Chem 218: 97-106. PubMed: 13278318.
-
(1956)
J Biol Chem
, vol.218
, pp. 97-106
-
-
Vogel, H.J.1
Bonner, D.M.2
-
50
-
-
0029665023
-
Preparation of electrocompetent E. coli using salt-free growth medium
-
PubMed: 8770403
-
Sharma RC, Schimke RT, (1996) Preparation of electrocompetent E. coli using salt-free growth medium. BioTechniques 20: 42-44. PubMed: 8770403.
-
(1996)
BioTechniques
, vol.20
, pp. 42-44
-
-
Sharma, R.C.1
Schimke, R.T.2
-
51
-
-
32244448730
-
A 10-min method for preparation of highly electrocompetent Pseudomonas aeruginosa cells: application for DNA fragment transfer between chromosomes and plasmid transformation
-
doi: 10.1016/j.mimet.2005.06.001
-
Choi KH, Kumar A, Schweizer HP, (2006) A 10-min method for preparation of highly electrocompetent Pseudomonas aeruginosa cells: application for DNA fragment transfer between chromosomes and plasmid transformation. J Microbiol Methods 64: 391-397. doi:10.1016/j.mimet.2005.06.001. PubMed: 15987659.
-
(2006)
J Microbiol Methods
, vol.64
, pp. 391-397
-
-
Choi, K.H.1
Kumar, A.2
Schweizer, H.P.3
-
52
-
-
0025047590
-
Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria
-
PubMed: 2172216
-
Herrero M, de Lorenzo V, Timmis KN, (1990) Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria. J Bacteriol 172: 6557-6567. PubMed: 2172216.
-
(1990)
J Bacteriol
, vol.172
, pp. 6557-6567
-
-
Herrero, M.1
de Lorenzo, V.2
Timmis, K.N.3
-
53
-
-
0014674485
-
A complementation analysis of the restriction and modification of DNA in Escherichia coli
-
doi: 10.1016/0022-2836(69)90288-5
-
Boyer HW, Roulland-Dussoix D, (1969) A complementation analysis of the restriction and modification of DNA in Escherichia coli. J Mol Biol 41: 459-472. doi:10.1016/0022-2836(69)90288-5. PubMed: 4896022.
-
(1969)
J Mol Biol
, vol.41
, pp. 459-472
-
-
Boyer, H.W.1
Roulland-Dussoix, D.2
-
54
-
-
0000527903
-
Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans
-
doi: 10.1073/pnas.76.4.1648
-
Figurski DH, Helinski DR, (1979) Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans. Proc Natl Acad Sci U S A 76: 1648-1652. doi:10.1073/pnas.76.4.1648. PubMed: 377280.
-
(1979)
Proc Natl Acad Sci U S A
, vol.76
, pp. 1648-1652
-
-
Figurski, D.H.1
Helinski, D.R.2
-
55
-
-
0017374604
-
Two modes of loss of the Tol function from Pseudomonas putida mt-2
-
doi: 10.1007/BF00330838
-
Bayley SA, Duggleby CJ, Worsey MJ, Williams PA, Hardy KG, et al. (1977) Two modes of loss of the Tol function from Pseudomonas putida mt-2. Mol Gen Genet 154: 203-204. doi:10.1007/BF00330838. PubMed: 895716.
-
(1977)
Mol Gen Genet
, vol.154
, pp. 203-204
-
-
Bayley, S.A.1
Duggleby, C.J.2
Worsey, M.J.3
Williams, P.A.4
Hardy, K.G.5
-
56
-
-
0036937473
-
Pedigree and taxonomic credentials of Pseudomonas putida strain KT2440
-
doi: 10.1046/j.1462-2920.2002.00368.x
-
Regenhardt D, Heuer H, Heim S, Fernandez DU, Strömpl C, et al. (2002) Pedigree and taxonomic credentials of Pseudomonas putida strain KT2440. Environ Microbiol 4: 912-915. doi:10.1046/j.1462-2920.2002.00368.x. PubMed: 12534472.
-
(2002)
Environ Microbiol
, vol.4
, pp. 912-915
-
-
Regenhardt, D.1
Heuer, H.2
Heim, S.3
Fernandez, D.U.4
Strömpl, C.5
-
57
-
-
0027938931
-
An aromatic effector specificity mutant of the transcriptional regulator DmpR overcomes the growth constraints of Pseudomonas sp. strain CF600 on para-substituted methylphenols
-
PubMed: 8002579
-
Pavel H, Forsman M, Shingler V, (1994) An aromatic effector specificity mutant of the transcriptional regulator DmpR overcomes the growth constraints of Pseudomonas sp. strain CF600 on para-substituted methylphenols. J Bacteriol 176: 7550-7557. PubMed: 8002579.
-
(1994)
J Bacteriol
, vol.176
, pp. 7550-7557
-
-
Pavel, H.1
Forsman, M.2
Shingler, V.3
-
58
-
-
0035004274
-
A panel of Tn7-based vectors for insertion of the gfp marker gene or for delivery of cloned DNA into Gram-negative bacteria at a neutral chromosomal site
-
doi: 10.1016/S0167-7012(01)00246-9
-
Koch B, Jensen LE, Nybroe O, (2001) A panel of Tn7-based vectors for insertion of the gfp marker gene or for delivery of cloned DNA into Gram-negative bacteria at a neutral chromosomal site. J Microbiol Methods 45: 187-195. doi:10.1016/S0167-7012(01)00246-9. PubMed: 11348676.
-
(2001)
J Microbiol Methods
, vol.45
, pp. 187-195
-
-
Koch, B.1
Jensen, L.E.2
Nybroe, O.3
-
59
-
-
0025195680
-
Mini-Tn5 transposon derivatives for insertion mutagenesis, promoter probing, and chromosomal insertion of cloned DNA in gram-negative eubacteria
-
PubMed: 2172217
-
de Lorenzo V, Herrero M, Jakubzik U, Timmis KN, (1990) Mini-Tn5 transposon derivatives for insertion mutagenesis, promoter probing, and chromosomal insertion of cloned DNA in gram-negative eubacteria. J Bacteriol 172: 6568-6572. PubMed: 2172217.
-
(1990)
J Bacteriol
, vol.172
, pp. 6568-6572
-
-
de Lorenzo, V.1
Herrero, M.2
Jakubzik, U.3
Timmis, K.N.4
-
60
-
-
7644220468
-
The ColR-ColS two-component signal transduction system is involved in regulation of Tn4652 transposition in Pseudomonas putida under starvation conditions
-
doi: 10.1111/j.1365-2958.2004.04311.x
-
Hõrak R, Ilves H, Pruunsild P, Kuljus M, Kivisaar M, (2004) The ColR-ColS two-component signal transduction system is involved in regulation of Tn4652 transposition in Pseudomonas putida under starvation conditions. Mol Microbiol 54: 795-807. doi:10.1111/j.1365-2958.2004.04311.x. PubMed: 15491368.
-
(2004)
Mol Microbiol
, vol.54
, pp. 795-807
-
-
Hõrak, R.1
Ilves, H.2
Pruunsild, P.3
Kuljus, M.4
Kivisaar, M.5
-
61
-
-
80053648189
-
Engineering multiple genomic deletions in Gram-negative bacteria: analysis of the multi-resistant antibiotic profile of Pseudomonas putida KT2440
-
doi: 10.1111/j.1462-2920.2011.02538.x
-
Martínez-García E, de Lorenzo V, (2011) Engineering multiple genomic deletions in Gram-negative bacteria: analysis of the multi-resistant antibiotic profile of Pseudomonas putida KT2440. Environ Microbiol 13: 2702-2716. doi:10.1111/j.1462-2920.2011.02538.x. PubMed: 21883790.
-
(2011)
Environ Microbiol
, vol.13
, pp. 2702-2716
-
-
Martínez-García, E.1
de Lorenzo, V.2
-
62
-
-
0034730128
-
Genetic footprinting with mariner-based transposition in Pseudomonas aeruginosa
-
doi: 10.1073/pnas.97.18.10191
-
Wong SM, Mekalanos JJ, (2000) Genetic footprinting with mariner-based transposition in Pseudomonas aeruginosa. Proc Natl Acad Sci U S A 97: 10191-10196. doi:10.1073/pnas.97.18.10191. PubMed: 10963681.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 10191-10196
-
-
Wong, S.M.1
Mekalanos, J.J.2
-
63
-
-
0033735452
-
Improved gfp and inaZ broad-host-range promoter-probe vectors
-
doi: 10.1094/MPMI.2000.13.11.1243
-
Miller WG, Leveau JH, Lindow SE, (2000) Improved gfp and inaZ broad-host-range promoter-probe vectors. Mol Plant Microbe Interact 13: 1243-1250. doi:10.1094/MPMI.2000.13.11.1243. PubMed: 11059491.
-
(2000)
Mol Plant Microbe Interact
, vol.13
, pp. 1243-1250
-
-
Miller, W.G.1
Leveau, J.H.2
Lindow, S.E.3
-
64
-
-
0036933705
-
Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440
-
doi: 10.1046/j.1462-2920.2002.00366.x
-
Nelson KE, Weinel C, Paulsen IT, Dodson RJ, Hilbert H, et al. (2002) Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environ Microbiol 4: 799-808. doi:10.1046/j.1462-2920.2002.00366.x. PubMed: 12534463.
-
(2002)
Environ Microbiol
, vol.4
, pp. 799-808
-
-
Nelson, K.E.1
Weinel, C.2
Paulsen, I.T.3
Dodson, R.J.4
Hilbert, H.5
-
65
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
doi: 10.1093/nar/25.17.3389
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402. doi:10.1093/nar/25.17.3389. PubMed: 9254694.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
66
-
-
78651285748
-
CDD: a Conserved Domain Database for the functional annotation of proteins
-
doi: 10.1093/nar/gkq1189
-
Marchler-Bauer A, Lu S, Anderson JB, Chitsaz F, Derbyshire MK, et al. (2011) CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res 39: D225-D229. doi:10.1093/nar/gkq1189. PubMed: 21109532.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Marchler-Bauer, A.1
Lu, S.2
Anderson, J.B.3
Chitsaz, F.4
Derbyshire, M.K.5
-
67
-
-
10044222704
-
CLANS: a Java application for visualizing protein families based on pairwise similarity
-
doi: 10.1093/bioinformatics/bth444
-
Frickey T, Lupas A, (2004) CLANS: a Java application for visualizing protein families based on pairwise similarity. Bioinformatics 20: 3702-3704. doi:10.1093/bioinformatics/bth444. PubMed: 15284097.
-
(2004)
Bioinformatics
, vol.20
, pp. 3702-3704
-
-
Frickey, T.1
Lupas, A.2
-
68
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
doi: 10.1093/bioinformatics/btm404
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, et al. (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948. doi:10.1093/bioinformatics/btm404. PubMed: 17846036.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
-
69
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
PubMed: 7584402
-
Bailey TL, Elkan C, (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol 2: 28-36. PubMed: 7584402.
-
(1994)
Proc Int Conf Intell Syst Mol Biol
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
70
-
-
79953300078
-
FIMO: scanning for occurrences of a given motif
-
doi: 10.1093/bioinformatics/btr064
-
Grant CE, Bailey TL, Noble WS, (2011) FIMO: scanning for occurrences of a given motif. Bioinformatics 27: 1017-1018. doi:10.1093/bioinformatics/btr064. PubMed: 21330290.
-
(2011)
Bioinformatics
, vol.27
, pp. 1017-1018
-
-
Grant, C.E.1
Bailey, T.L.2
Noble, W.S.3
-
71
-
-
84884823007
-
Derivations and genotypes of some mutant derivatives of Escherichia coli K-12
-
Washington, DC: American Society for Microbiology
-
Bachmann BJ, (1987) Derivations and genotypes of some mutant derivatives of Escherichia coli K-12, in: Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology; Neidhard FC, Ingraham J, Low KB, Magasanik B, Schaewchler M, eds. Washington, DC: American Society for Microbiology.
-
(1987)
Escherichia Coli and Salmonella Typhimurium: Cellular and Molecular Biology
-
-
Neidhard, F.C.1
Ingraham, J.2
Low, K.B.3
Magasanik, B.4
Schaewchler, M.5
-
72
-
-
0026748369
-
Oxidation of methylhydrazines to mutagenic methylating derivatives and inducers of the adaptive response of Escherichia coli to alkylation damage
-
PubMed: 1617641
-
Sedgwick B, (1992) Oxidation of methylhydrazines to mutagenic methylating derivatives and inducers of the adaptive response of Escherichia coli to alkylation damage. Cancer Res 52: 3693-3697. PubMed: 1617641.
-
(1992)
Cancer Res
, vol.52
, pp. 3693-3697
-
-
Sedgwick, B.1
-
73
-
-
0029760025
-
Contribution of ogt-encoded alkyltransferase to resistance to chloroethylnitrosoureas in nucleotide excision repair-deficient Escherichia coli
-
doi: 10.1093/carcin/17.8.1609
-
Abril N, Ferrezuelo F, Prieto-Alamo MJ, Rafferty JA, Margison GP, et al. (1996) Contribution of ogt-encoded alkyltransferase to resistance to chloroethylnitrosoureas in nucleotide excision repair-deficient Escherichia coli. Carcinogenesis 17: 1609-1614. doi:10.1093/carcin/17.8.1609. PubMed: 8761416.
-
(1996)
Carcinogenesis
, vol.17
, pp. 1609-1614
-
-
Abril, N.1
Ferrezuelo, F.2
Prieto-Alamo, M.J.3
Rafferty, J.A.4
Margison, G.P.5
|