메뉴 건너뛰기




Volumn 34, Issue 1, 2006, Pages 66-77

Dispersal and regulation of an adaptive mutagenesis cassette in the bacteria domain

Author keywords

[No Author keywords available]

Indexed keywords

DNA DIRECTED DNA POLYMERASE GAMMA; LEXA PROTEIN;

EID: 31544453298     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkj412     Document Type: Article
Times cited : (63)

References (40)
  • 1
    • 0141453385 scopus 로고    scopus 로고
    • Stationary phase mutagenesis: Mechanisms that accelerate adaptation of microbial populations under environmental stress
    • Kivisaar,M. (2003) Stationary phase mutagenesis: Mechanisms that accelerate adaptation of microbial populations under environmental stress. Environ. Microbiol., 5, 814-827.
    • (2003) Environ. Microbiol. , vol.5 , pp. 814-827
    • Kivisaar, M.1
  • 2
    • 0034669125 scopus 로고    scopus 로고
    • All three SOS-inducible DNA polymerases (PolII, PolIV and PolV) are involved in induced mutagenesis
    • Napolitano,R., Janel-Bintz,R., Wagner,J. and Fuchs,R.P. (2000) All three SOS-inducible DNA polymerases (PolII, PolIV and PolV) are involved in induced mutagenesis. EMBO J., 19, 6259-6265.
    • (2000) EMBO J. , vol.19 , pp. 6259-6265
    • Napolitano, R.1    Janel-Bintz, R.2    Wagner, J.3    Fuchs, R.P.4
  • 3
    • 0142062024 scopus 로고    scopus 로고
    • Error-prone DNA polymerase IV is controlled by the stress-response sigma factor, RpoS, in Escherichia coli
    • Layton,J.C. and Foster,P.L. (2003) Error-prone DNA polymerase IV is controlled by the stress-response sigma factor, RpoS, in Escherichia coli. Mol. Microbiol., 50, 549-561.
    • (2003) Mol. Microbiol. , vol.50 , pp. 549-561
    • Layton, J.C.1    Foster, P.L.2
  • 4
    • 21244433058 scopus 로고    scopus 로고
    • Adaptation to DNA damage and stimulation of genetic instability: The double-edged sword mammalian DNA polymerase kappa
    • Bavoux,C., Hoffmann,J.S. and Cazaux,C. (2005) Adaptation to DNA damage and stimulation of genetic instability: The double-edged sword mammalian DNA polymerase kappa. Biochimie, 87,637-646.
    • (2005) Biochimie , vol.87 , pp. 637-646
    • Bavoux, C.1    Hoffmann, J.S.2    Cazaux, C.3
  • 5
    • 0021320685 scopus 로고
    • Mutagenesis and inducible responses to deoxyribonucleic acid damage in Escherichia coli
    • Walker,G.C. (1984) Mutagenesis and inducible responses to deoxyribonucleic acid damage in Escherichia coli. Microbiol Rev., 48, 60-93.
    • (1984) Microbiol Rev. , vol.48 , pp. 60-93
    • Walker, G.C.1
  • 7
    • 0035023305 scopus 로고    scopus 로고
    • Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli
    • Courcelle,J., Khodursky,A., Peter,B., Brown,P.O. and Hanawalt,P.C. (2001) Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli. Genetics, 158, 41-64.
    • (2001) Genetics , vol.158 , pp. 41-64
    • Courcelle, J.1    Khodursky, A.2    Peter, B.3    Brown, P.O.4    Hanawalt, P.C.5
  • 8
    • 0025361131 scopus 로고
    • Nature of SOS-inducing signal in Escherichia coli. The involvement of DNA replication
    • Sassanfar,M. and Roberts,J.W. (1990) Nature of SOS-inducing signal in Escherichia coli. The involvement of DNA replication. J. Mol. Biol., 212, 79-96.
    • (1990) J. Mol. Biol. , vol.212 , pp. 79-96
    • Sassanfar, M.1    Roberts, J.W.2
  • 9
    • 0025810994 scopus 로고
    • Mechanism of specific LexA cleavage: Autodigestion and the role of RecA coprotease
    • Little,J.W. (1991) Mechanism of specific LexA cleavage: Autodigestion and the role of RecA coprotease. Biochimie, 73, 411-421.
    • (1991) Biochimie , vol.73 , pp. 411-421
    • Little, J.W.1
  • 10
    • 0344464768 scopus 로고    scopus 로고
    • In silica analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon
    • Erill,I., Escribano,M., Campoy,S. and Barbé,J. (2003) In silica analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon. Bioinformatics, 19, 2225-2236.
    • (2003) Bioinformatics , vol.19 , pp. 2225-2236
    • Erill, I.1    Escribano, M.2    Campoy, S.3    Barbé, J.4
  • 13
    • 0036837797 scopus 로고    scopus 로고
    • A green nonsulfur bacterium, Dehalococcoides ethenogenes, with the LexA binding sequence found in gram-positive organisms
    • Fernández de Henestrosa,A.R., Cuñé,J., Erill,I., Magnuson,J.K, and Barbé,J. (2002) A green nonsulfur bacterium, Dehalococcoides ethenogenes, with the LexA binding sequence found in gram-positive organisms. J. Bacteriol., 184, 6073-6080.
    • (2002) J. Bacteriol. , vol.184 , pp. 6073-6080
    • Fernández de Henestrosa, A.R.1    Cuñé, J.2    Erill, I.3    Magnuson, J.K.4    Barbé, J.5
  • 15
    • 13544260858 scopus 로고    scopus 로고
    • Differences in LexA regulon structure among proteobacteria through in vivo assisted comparative genomics
    • Erill,I., Jara,M., Salvador,N., Escribano,M., Campoy,S. and Barbé,J. (2004) Differences in LexA regulon structure among proteobacteria through in vivo assisted comparative genomics. Nucleic Acids Res., 32, 6617-6626.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 6617-6626
    • Erill, I.1    Jara, M.2    Salvador, N.3    Escribano, M.4    Campoy, S.5    Barbé, J.6
  • 16
    • 0036855349 scopus 로고    scopus 로고
    • A new regulatory DNA motif of the gamma subclass proteobacteria: Identification of the LexA protein binding site of the plant pathogen Xylella fastidiosa
    • Campoy,S., Mazón,G., Fernández de Henestrosa,A.R., Llagostera,M., Brant-Monteiro,P. and Barbé,J. (2002) A new regulatory DNA motif of the gamma subclass proteobacteria: Identification of the LexA protein binding site of the plant pathogen Xylella fastidiosa. Microbiology, 148, 3583-3597.
    • (2002) Microbiology , vol.148 , pp. 3583-3597
    • Campoy, S.1    Mazón, G.2    Fernández de Henestrosa, A.R.3    Llagostera, M.4    Brant-Monteiro, P.5    Barbé, J.6
  • 17
    • 9144266449 scopus 로고    scopus 로고
    • Reconstruction of the evolutionary history of the LexA-binding sequence
    • Mazón,G., Erill,I., Campoy,S., Cortes,P., Forano,E. and Barbe,J. (2004) Reconstruction of the evolutionary history of the LexA-binding sequence. Microbiology, 150, 3783-3795.
    • (2004) Microbiology , vol.150 , pp. 3783-3795
    • Mazón, G.1    Erill, I.2    Campoy, S.3    Cortes, P.4    Forano, E.5    Barbe, J.6
  • 18
    • 0041663983 scopus 로고    scopus 로고
    • LexA-independent DNA damage-mediated induction of gene expression in Myxococcus xanthus
    • Campoy,S., Fontes,M., Padmanabhan,S., Cortes,P., Llagostera,M. and Barbé,J. (2003) LexA-independent DNA damage-mediated induction of gene expression in Myxococcus xanthus. Mol. Microbiol., 49, 769-781.
    • (2003) Mol. Microbiol. , vol.49 , pp. 769-781
    • Campoy, S.1    Fontes, M.2    Padmanabhan, S.3    Cortes, P.4    Llagostera, M.5    Barbé, J.6
  • 19
    • 22544483228 scopus 로고    scopus 로고
    • Expression of canonical SOS genes is not under LexA repression in Bdellovibrio bacteriovorus
    • Campoy,S., Salvador,N., Cortes,P., Erill,I. and Barbe,J. (2005) Expression of canonical SOS genes is not under LexA repression in Bdellovibrio bacteriovorus. J. Bacteriol., 187, 5367-5375.
    • (2005) J. Bacteriol. , vol.187 , pp. 5367-5375
    • Campoy, S.1    Salvador, N.2    Cortes, P.3    Erill, I.4    Barbe, J.5
  • 20
    • 4744339390 scopus 로고    scopus 로고
    • Widespread distribution of a lexA-regulated DNA damage-inducible multiple gene cassette in the proteobacteria phylum
    • Abella,M., Erill,I., Jara,M., Mazón,G., Campoy,S. and Barbé,J. (2004) Widespread distribution of a lexA-regulated DNA damage-inducible multiple gene cassette in the proteobacteria phylum. Mol. Microbiol., 54, 212-222.
    • (2004) Mol. Microbiol. , vol.54 , pp. 212-222
    • Abella, M.1    Erill, I.2    Jara, M.3    Mazón, G.4    Campoy, S.5    Barbé, J.6
  • 21
    • 19444386290 scopus 로고    scopus 로고
    • An SOS-regulated operon involved in damage-inducible mutagenesis in Caulobacter crescentus
    • Galhardo,R.S., Rocha,R.P., Marques,M.V. and Menck,C.F.M. (2005) An SOS-regulated operon involved in damage-inducible mutagenesis in Caulobacter crescentus. Nucleic Acids Res., 33, 2603-2614.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2603-2614
    • Galhardo, R.S.1    Rocha, R.P.2    Marques, M.V.3    Menck, C.F.M.4
  • 23
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey,T.L. and Elkan,C. (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol., 2, 28-36.
    • (1994) Proc. Int. Conf. Intell. Syst. Mol. Biol. , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 24
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson,J.D., Higgins,D.G. and Gibson,T.J. (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 25
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: A novel method for multiple sequence alignments
    • Notredame,C., Higgins,D. and Heringa,J. (2000) T-Coffee: A novel method for multiple sequence alignments. J. Mol. Biol., 302, 205-217.
    • (2000) J. Mol. Biol. , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.2    Heringa, J.3
  • 26
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall,T.A. (1999) BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser., 41, 95-98.
    • (1999) Nucleic Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 27
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana,J. (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol., 17, 540-552.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 540-552
    • Castresana, J.1
  • 28
    • 0041386108 scopus 로고    scopus 로고
    • MRBAYES 3: Bayesian phylogenetic inference under mixed models
    • Ronquist,F. and Huelsenbeck,J.P. (2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 29
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenees by maximum likelihood
    • Guindon,S. and Gascuel,O. (2003) A simple, fast, and accurate algorithm to estimate large phylogenees by maximum likelihood. Syst. Biol., 52, 696-704.
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 30
    • 0030203863 scopus 로고    scopus 로고
    • TREEVIEW: An application to display phylogenetic trees on personal computers
    • Page,R.D. (1996) TREEVIEW: An application to display phylogenetic trees on personal computers. Comput. Appl. Biosci., 12, 357-358.
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 357-358
    • Page, R.D.1
  • 31
    • 0001271789 scopus 로고
    • Phylogenetic structure of the prokaryotic domains: The primary kingdoms
    • Woese,C.R. and Fox,G.E. (1977) Phylogenetic structure of the prokaryotic domains: The primary kingdoms. Proc. Natl Acad. Sci. USA, 74, 5088-5090.
    • (1977) Proc. Natl Acad. Sci. USA , vol.74 , pp. 5088-5090
    • Woese, C.R.1    Fox, G.E.2
  • 32
    • 0029610851 scopus 로고
    • The RecA protein as a model molecule for molecular systematic studies of bacteria: Comparison of trees of RecAs and 16S rRNAs from the same species
    • Eisen,J.A. (1995) The RecA protein as a model molecule for molecular systematic studies of bacteria: Comparison of trees of RecAs and 16S rRNAs from the same species. J. Mol. Evol., 41, 1105-1123.
    • (1995) J. Mol. Evol. , vol.41 , pp. 1105-1123
    • Eisen, J.A.1
  • 33
    • 0033935581 scopus 로고    scopus 로고
    • The natural evolutionary relationships among prokaryotes
    • Gupta,R.S. (2000) The natural evolutionary relationships among prokaryotes. Crit. Rev. Microbiol., 26, 111-131.
    • (2000) Crit. Rev. Microbiol. , vol.26 , pp. 111-131
    • Gupta, R.S.1
  • 34
    • 0037453719 scopus 로고    scopus 로고
    • DnaE2 polymerase contributes to in vivo survival and the emergence of drug resistance in Mycobacterium tuberculosis
    • Boshoff,H.I., Reed,M.B., Bany,C.E.III and Mizrahi,V. (2003) DnaE2 polymerase contributes to in vivo survival and the emergence of drug resistance in Mycobacterium tuberculosis. Cell, 113, 183-193.
    • (2003) Cell , vol.113 , pp. 183-193
    • Boshoff, H.I.1    Reed, M.B.2    Bany III, C.E.3    Mizrahi, V.4
  • 35
    • 0031443646 scopus 로고    scopus 로고
    • Multiple pathways for SOS-induced mutagenesis in Escherichia coli: An overexpression of dinB/dinP results in strongly enhancing mutagenesis in the absence of any exogenous treatment to damage DNA
    • Kim,S.R., Maenhaut-Michel,G., Yamada,M., Yamamoto,Y., Matsui,K., Sofuni,T., Nohmi,T. and Ohmori,H. (1997) Multiple pathways for SOS-induced mutagenesis in Escherichia coli: An overexpression of dinB/ dinP results in strongly enhancing mutagenesis in the absence of any exogenous treatment to damage DNA. Proc. Natl Acad. Sci. USA, 94, 13792-13797.
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 13792-13797
    • Kim, S.R.1    Maenhaut-Michel, G.2    Yamada, M.3    Yamamoto, Y.4    Matsui, K.5    Sofuni, T.6    Nohmi, T.7    Ohmori, H.8
  • 36
    • 0030816589 scopus 로고    scopus 로고
    • 16S rRNA gene sequence of Rubrobacter radiotolerans and its phylogenetic alignment with members of the genus Arthrobacter, gram-positive bacteria, and members of the family Deinococcaceae
    • Kausar,J., Ohyama,Y., Terato,H., Ide,H. and Yamamoto,O. (1997) 16S rRNA gene sequence of Rubrobacter radiotolerans and its phylogenetic alignment with members of the genus Arthrobacter, gram-positive bacteria, and members of the family Deinococcaceae. Int. J. Syst. Bacteriol., 47, 684-686.
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 684-686
    • Kausar, J.1    Ohyama, Y.2    Terato, H.3    Ide, H.4    Yamamoto, O.5
  • 38
    • 0002803581 scopus 로고    scopus 로고
    • Overview: A phylogenetic backbone and taxonomic frame work for prokaryotic systematics
    • Boone,D.R., Castelholtz,R.W. and Garrity,G.M. (eds), 2nd edn. Springer-Verlag, NY
    • Ludwig,W. and Menk,H.P. (2001) Overview: A phylogenetic backbone and taxonomic frame work for prokaryotic systematics. In Boone,D.R., Castelholtz,R.W. and Garrity,G.M. (eds), Bergey's Manual of Systematic Bacteriology. 2nd edn. Springer-Verlag, NY, pp. 49-65.
    • (2001) Bergey's Manual of Systematic Bacteriology , pp. 49-65
    • Ludwig, W.1    Menk, H.P.2
  • 40
    • 0027513320 scopus 로고
    • Cell division inhibitors SulA and MinCD prevent formation of the FtsZ ring
    • Bi,E. and Lutkenhaus,J. (1993) Cell division inhibitors SulA and MinCD prevent formation of the FtsZ ring. J. Bacteriol., 175, 1118-1125.
    • (1993) J. Bacteriol. , vol.175 , pp. 1118-1125
    • Bi, E.1    Lutkenhaus, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.