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Volumn 22, Issue 5, 2013, Pages 608-621

Phylogenetic analyses of vector mosquito basic helix-loop-helix transcription factors

Author keywords

basic helix loop helix; phylogenetic analysis; transcription factor; vector mosquito

Indexed keywords

AEDES AEGYPTI; ANOPHELES GAMBIAE; ANOPHELES GAMBIAE STR. PEST; CULEX PIPIENS QUINQUEFASCIATUS; HEXAPODA;

EID: 84883559031     PISSN: 09621075     EISSN: 13652583     Source Type: Journal    
DOI: 10.1111/imb.12049     Document Type: Article
Times cited : (21)

References (57)
  • 2
    • 77957370433 scopus 로고    scopus 로고
    • Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics
    • et al.
    • Arensburger, P., Megy, K., Waterhouse, R.M., Abrudan, J., Amedeo, P., Antelo, B., et al. (2010) Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics. Science 330: 86-88.
    • (2010) Science , vol.330 , pp. 86-88
    • Arensburger, P.1    Megy, K.2    Waterhouse, R.M.3    Abrudan, J.4    Amedeo, P.5    Antelo, B.6
  • 4
    • 0032925848 scopus 로고    scopus 로고
    • Positional dependence, cliques, and predictive motifs in the bHLH protein domain
    • DOI 10.1007/PL00006494
    • Atchley, W.R., Terhalle, W., and, Dress, A., (1999) Positional dependence, cliques, and predictive motifs in the bHLH protein domain. J Mol Evol 48: 501-516. (Pubitemid 29211426)
    • (1999) Journal of Molecular Evolution , vol.48 , Issue.5 , pp. 501-516
    • Atchley, W.R.1    Terhalle, W.2    Dress, A.3
  • 5
    • 79959931610 scopus 로고    scopus 로고
    • Comparative genomic analysis of Drosophila melanogaster and vector mosquito developmental genes
    • et al.
    • Behura, S.K., Haugen, M., Flannery, E., Sarro, J., Tessier, C.R., Severson, D.W., et al. (2011) Comparative genomic analysis of Drosophila melanogaster and vector mosquito developmental genes. PLoS ONE 6: e21504.
    • (2011) PLoS ONE , vol.6
    • Behura, S.K.1    Haugen, M.2    Flannery, E.3    Sarro, J.4    Tessier, C.R.5    Severson, D.W.6
  • 6
    • 4444284470 scopus 로고    scopus 로고
    • Management of patients with lymphoedema caused by filariasis in north-eastern Tanzania
    • DOI 10.1016/S0031-9406(05)60500-7
    • Bernhard, L., Bernhard, P., and, Magnussen, P., (2003) Management of patients with lymphoedema caused by filariasis in northeastern Tanzania: alternative approaches. Physiotherapy 89: 743-749. (Pubitemid 39172649)
    • (2003) Physiotherapy , vol.89 , Issue.12 , pp. 743-749
    • Bernhard, L.1    Bernhard, P.2    Magnussen, P.3
  • 7
    • 0020338558 scopus 로고
    • Gene-dose titration analysis in the search of trans-regulatory genes in Drosophila
    • Botas, J., Moscoso del Prado, J., and, Garcia-Bellido, A., (1982) Gene-dose titration analysis in the search of trans-regulatory genes in Drosophila. EMBO J 1: 307-310.
    • (1982) EMBO J , vol.1 , pp. 307-310
    • Botas, J.1    Moscoso Del Prado, J.2    Garcia-Bellido, A.3
  • 11
    • 80052100504 scopus 로고    scopus 로고
    • The basic helix-loop-helix transcription factor family in the pea aphid, Acyrthosiphon pisum
    • Dang, C.W., Wang, Y., Chen, K.P., Yao, Q., Zhang, D.B., and, Guo, M., (2011) The basic helix-loop-helix transcription factor family in the pea aphid, Acyrthosiphon pisum. J Insect Sci 11: 84.
    • (2011) J Insect Sci , vol.11 , pp. 84
    • Dang, C.W.1    Wang, Y.2    Chen, K.P.3    Yao, Q.4    Zhang, D.B.5    Guo, M.6
  • 12
    • 0028048244 scopus 로고
    • Embryonic expression and function of the Drosophila helix-loop-helix gene, extramacrochaetae
    • DOI 10.1016/0925-4773(94)90096-5
    • Ellis, H.M., (1994) Embryonic expression and function of the Drosophila helix-loop-helix gene, extramacrochaetae. Mech Dev 47: 65-72. (Pubitemid 24242117)
    • (1994) Mechanisms of Development , vol.47 , Issue.1 , pp. 65-72
    • Ellis, H.M.1
  • 14
    • 0027910469 scopus 로고
    • Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain
    • Ferre-D'Amare, A.R., Prendergast, G.C., Ziff, E.B., and, Burley, S.K., (1993) Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain. Nature 363: 38-45. (Pubitemid 23144958)
    • (1993) Nature , vol.362 , Issue.6424 , pp. 38-45
    • Ferre-D'Amare, A.R.1    Prendergast, G.C.2    Ziff, E.B.3    Burley, S.K.4
  • 15
    • 0032054380 scopus 로고    scopus 로고
    • The function of hairy-related bHLH repressor proteins in cell fate decisions
    • DOI 10.1002/(SICI)1521-1878(199804)20:4 <298::AID-BIES6>3.0.CO;2-M
    • Fisher, A., and, Caudy, M., (1998) The function of hairy-related bHLH repressor proteins in cell fate decisions. Bioessays 20: 298-306. (Pubitemid 28205547)
    • (1998) BioEssays , vol.20 , Issue.4 , pp. 298-306
    • Fisher, A.1    Caudy, M.2
  • 16
    • 0014800108 scopus 로고
    • Distinguishing homologous from analogous proteins
    • Fitch, W.M., (1970) Distinguishing homologous from analogous proteins. Syst Zool 19: 99-113.
    • (1970) Syst Zool , vol.19 , pp. 99-113
    • Fitch, W.M.1
  • 17
    • 0028353775 scopus 로고
    • Transcriptional activation domains of the single-minded bHLH protein are required for CNS midline cell development
    • DOI 10.1016/0925-4773(94)90013-2
    • Franks, R.G., and, Crews, S.T., (1994) Transcriptional activation domains of the single-minded bHLH protein are required for CNS midline cell development. Mech Dev 45: 269-277. (Pubitemid 24097569)
    • (1994) Mechanisms of Development , vol.45 , Issue.3 , pp. 269-277
    • Franks, R.G.1    Crews, S.T.2
  • 18
    • 0030918181 scopus 로고    scopus 로고
    • Tap, a Drosophila bHLH gene expressed in chemosensory organs
    • DOI 10.1016/S0378-1119(97)00021-8, PII S0378111997000218
    • Gautier, P., Ledent, V., Massaer, M., Dambly-Chaudiere, C., and, Ghysen, A., (1997) tap, a Drosophila bHLH gene expressed in chemosensory organs. Gene 191: 15-21. (Pubitemid 27254402)
    • (1997) Gene , vol.191 , Issue.1 , pp. 15-21
    • Gautier, P.1    Ledent, V.2    Massaer, M.3    Dambly-Chaudiere, C.4    Ghysen, A.5
  • 21
    • 0027233365 scopus 로고
    • Atonal Is a proneural gene that directs chordotonal organ formation in the Drosophila peripheral nervous system
    • DOI 10.1016/0092-8674(93)90358-W
    • Jarman, A.P., Grau, Y., Jan, L.Y., and, Jan, Y.N., (1993) Atonal is a proneural gene that directs chordotonal organ formation in the Drosophila peripheral nervous system. Cell 73: 1307-1321. (Pubitemid 23201145)
    • (1993) Cell , vol.73 , Issue.7 , pp. 1307-1321
    • Jarman, A.P.1    Grau, Y.2    Jan, L.Y.3    Yuh Nung Jan4
  • 22
    • 0029069560 scopus 로고
    • Role of the proneural gene, atonal, in formation of Drosophila chordotonal organs and photoreceptors
    • Jarman, A.P., Sun, Y., Jan, L.Y., and, Jan, Y.N., (1995) Role of the proneural gene, atonal, in formation of Drosophila chordotonal organs and photoreceptors. Development 121: 2019-2030.
    • (1995) Development , vol.121 , pp. 2019-2030
    • Jarman, A.P.1    Sun, Y.2    Jan, L.Y.3    Jan, Y.N.4
  • 23
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • Jones, D.T., Taylor, W.R., and, Thornton, J.M., (1992) The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 8: 275-282.
    • (1992) Comput Appl Biosci , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 24
    • 0027208834 scopus 로고
    • Consequences of heterodimeric interactions among helix-loop-helix proteins
    • Kadesh, T., (1993) Consequences of heterodimeric interactions among helix-loop-helix proteins. Cell Growth Differ 4: 49-55.
    • (1993) Cell Growth Differ , vol.4 , pp. 49-55
    • Kadesh, T.1
  • 25
    • 0030727631 scopus 로고    scopus 로고
    • Helix-loop-helix factors in growth and differentiation of the vertebrate nervous system
    • DOI 10.1016/S0959-437X(97)80014-7
    • Kageyama, R., and, Nakanishi, S., (1997) Helix-loop-helix factors in growth and differentiation of the vertebrate nervous system. Curr Opin Genet Dev 7: 659-665. (Pubitemid 27491431)
    • (1997) Current Opinion in Genetics and Development , vol.7 , Issue.5 , pp. 659-665
    • Kageyama, R.1    Nakanishi, S.2
  • 27
    • 0035001937 scopus 로고    scopus 로고
    • The basic helix-loop-helix protein family: Comparative genomics and phylogenetic analysis
    • DOI 10.1101/gr.177001
    • Ledent, V., and, Vervoort, M., (2001) The basic helix-loop-helix protein family: comparative genomics and phylogenetic analysis. Genome Res 11: 754-770. (Pubitemid 32447861)
    • (2001) Genome Research , vol.11 , Issue.5 , pp. 754-770
    • Ledent, V.1    Vervoort, M.2
  • 28
    • 18744421788 scopus 로고    scopus 로고
    • Phylogenetic analysis of the human basic helix-loop-helix proteins
    • Ledent, V., Paquet, O., and, Vervoort, M., (2002) Phylogenetic analysis of the human basic helix-loop-helix proteins. Genome Biol 3: RESEARCH0030.
    • (2002) Genome Biol , vol.3
    • Ledent, V.1    Paquet, O.2    Vervoort, M.3
  • 29
    • 33749628461 scopus 로고    scopus 로고
    • Identification and analysis of the mouse basic/Helix-Loop-Helix transcription factor family
    • DOI 10.1016/j.bbrc.2006.09.114, PII S0006291X06021334
    • Li, J., Liu, Q., Qiu, M., Pan, Y., Li, Y., and, Shi, T., (2006a) Identification and analysis of the mouse basic/Helix-Loop-Helix transcription factor family. Biochem Biophys Res Commun 350: 648-656. (Pubitemid 44547896)
    • (2006) Biochemical and Biophysical Research Communications , vol.350 , Issue.3 , pp. 648-656
    • Li, J.1    Liu, Q.2    Qiu, M.3    Pan, Y.4    Li, Y.5    Shi, T.6
  • 31
    • 84865568203 scopus 로고    scopus 로고
    • A genome-wide identification and analysis of the basic helix-loop-helix transcription factors in the ponerine ant, Harpegnathos saltator
    • et al.
    • Liu, A., Wang, Y., Dang, C., Zhang, D., Song, H., Yao, Q., et al. (2012) A genome-wide identification and analysis of the basic helix-loop-helix transcription factors in the ponerine ant, Harpegnathos saltator. BMC Evol Biol 12: 165.
    • (2012) BMC Evol Biol , vol.12 , pp. 165
    • Liu, A.1    Wang, Y.2    Dang, C.3    Zhang, D.4    Song, H.5    Yao, Q.6
  • 32
    • 77952495772 scopus 로고    scopus 로고
    • Genome-wide identification and analysis of the chicken basic helix-loop-helix factors
    • Liu, W.Y., and, Zhao, C.J., (2010) Genome-wide identification and analysis of the chicken basic helix-loop-helix factors. Comp Funct Genomics 2010: 682095.
    • (2010) Comp Funct Genomics , vol.2010 , pp. 682095
    • Liu, W.Y.1    Zhao, C.J.2
  • 33
    • 0033980393 scopus 로고    scopus 로고
    • Helix-loop-helix proteins: Regulators of transcription in eucaryotic organisms
    • DOI 10.1128/MCB.20.2.429-440.2000
    • Massari, M.E., and, Murre, C., (2000) Helix-loop-helix proteins: regulators of transcription in eucaryotic organisms. Mol Cell Biol 20: 429-440. (Pubitemid 30023084)
    • (2000) Molecular and Cellular Biology , vol.20 , Issue.2 , pp. 429-440
    • Massari, M.E.1    Murre, C.2
  • 34
    • 0019134329 scopus 로고
    • Molecular evolution of mRNA: A method for estimating evolutionary rates of synonymous and amino acid substitutions from homologous nucleotide sequences and its application
    • DOI 10.1007/BF01732067
    • Miyata, T., and, Yasunaga, T., (1980) Molecular evolution of mRNA: a method for estimating evolutionary rates of synonymous and amino acid substitutions from homologous nucleotide sequences and its application. J Mol Evol 16: 23-36. (Pubitemid 11202184)
    • (1980) Journal of Molecular Evolution , vol.16 , Issue.1 , pp. 23-36
    • Miyata, T.1    Yasunaga, T.2
  • 35
    • 0032751751 scopus 로고    scopus 로고
    • Evolution of bHLH transcription factors: Modular evolution by domain shuffling?
    • Morgenstern, B., and, Atchley, W.R., (1999) Evolution of bHLH transcription factors: modular evolution by domain shuffling? Mol Biol Evol 16: 1654-1663.
    • (1999) Mol Biol Evol , vol.16 , pp. 1654-1663
    • Morgenstern, B.1    Atchley, W.R.2
  • 39
    • 0002511466 scopus 로고    scopus 로고
    • GeneDoc: Analysis and visualization of genetic variation
    • Nicholas, K.B., Nicholas, H.B., and, Deerfield, D.W., (1997) GeneDoc: analysis and visualization of genetic variation. Embnet News 4: 1-4.
    • (1997) Embnet News , vol.4 , pp. 1-4
    • Nicholas, K.B.1    Nicholas, H.B.2    Deerfield, D.W.3
  • 40
    • 72449203090 scopus 로고    scopus 로고
    • Stochastic eco-epidemiological model of dengue disease transmission by Aedes aegypti mosquito
    • Otero, M., and, Solari, H.G., (2010) Stochastic eco-epidemiological model of dengue disease transmission by Aedes aegypti mosquito. Math Biosci 223: 32-46.
    • (2010) Math Biosci , vol.223 , pp. 32-46
    • Otero, M.1    Solari, H.G.2
  • 41
    • 0034533797 scopus 로고    scopus 로고
    • Mutations affecting the development of the peripheral nervous system in drosophila: A molecular screen for novel proteins
    • Prokopenko, S.N., He, Y., Lu, Y., and, Bellen, H.J., (2000) Mutations affecting the development of the peripheral nervous system in Drosophila: a molecular screen for novel proteins. Genetics 156: 1691-1715. (Pubitemid 32001235)
    • (2000) Genetics , vol.156 , Issue.4 , pp. 1691-1715
    • Prokopenko, S.N.1    He, Y.2    Lu, Y.3    Bellen, H.J.4
  • 42
    • 33646250928 scopus 로고    scopus 로고
    • Natural malaria infection in Anopheles gambiae is regulated by a single genomic control region
    • et al.
    • Riehle, M.M., Markianos, K., Niare, O., Xu, J.N., Li, J., Toure, A.M., et al. (2006) Natural malaria infection in Anopheles gambiae is regulated by a single genomic control region. Science 312: 577-579.
    • (2006) Science , vol.312 , pp. 577-579
    • Riehle, M.M.1    Markianos, K.2    Niare, O.3    Xu, J.N.4    Li, J.5    Toure, A.M.6
  • 43
    • 0037033984 scopus 로고    scopus 로고
    • The economic and social burden of malaria
    • DOI 10.1038/415680a
    • Sachs, J., and, Malaney, P., (2002) The economic and social burden of malaria. Nature 415: 680-685. (Pubitemid 34136401)
    • (2002) Nature , vol.415 , Issue.6872 , pp. 680-685
    • Sachs, J.1    Malaney, P.2
  • 44
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt, H.A., Strimmer, K., Vingron, M., and, von Haeseler, A., (2002) TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18: 502-504. (Pubitemid 34284960)
    • (2002) Bioinformatics , vol.18 , Issue.3 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    Von Haeseler, A.4
  • 45
    • 0035053745 scopus 로고    scopus 로고
    • Genetic and physical mapping in mosquitoes: Molecular approaches
    • DOI 10.1146/annurev.ento.46.1.183
    • Severson, D.W., Brown, S.E., and, Knudson, D.L., (2001) Genetic and physical mapping in mosquitoes: molecular approaches. Annu Rev Entomol 46: 183-219. (Pubitemid 32304988)
    • (2001) Annual Review of Entomology , vol.46 , pp. 183-219
    • Severson, D.W.1    Brown, S.E.2    Knudson, D.L.3
  • 46
    • 67649345185 scopus 로고
    • An improved Bonferroni procedure for multiple tests of significance
    • Simes, R.J., (1986) An improved Bonferroni procedure for multiple tests of significance. Biometrika 73: 751-754.
    • (1986) Biometrika , vol.73 , pp. 751-754
    • Simes, R.J.1
  • 47
    • 33947252158 scopus 로고    scopus 로고
    • Origin and diversification of the basic helix-loop-helix gene family in metazoans: Insights from comparative genomics
    • et al.
    • Simionato, E., Ledent, V., Richards, G., Thomas-Chollier, M., Kerner, P., Coornaert, D., et al. (2007) Origin and diversification of the basic helix-loop-helix gene family in metazoans: insights from comparative genomics. BMC Evol Biol 7: 33.
    • (2007) BMC Evol Biol , vol.7 , pp. 33
    • Simionato, E.1    Ledent, V.2    Richards, G.3    Thomas-Chollier, M.4    Kerner, P.5    Coornaert, D.6
  • 48
    • 77954144725 scopus 로고    scopus 로고
    • Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature
    • Skinner, M.K., Rawls, A., Wilson-Rawls, J., and, Roalson, E.H., (2010) Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation 80: 1-8.
    • (2010) Differentiation , vol.80 , pp. 1-8
    • Skinner, M.K.1    Rawls, A.2    Wilson-Rawls, J.3    Roalson, E.H.4
  • 49
    • 0030779952 scopus 로고    scopus 로고
    • Anopheline species complexes and malaria control
    • Subbarao, S.K., and, Sharma, V.P., (1997) Anopheline species complexes & malaria control. Indian J Med Res 106: 164-173. (Pubitemid 27395367)
    • (1997) Indian Journal of Medical Research , vol.106 , Issue.AUG. , pp. 164-173
    • Subbarao, S.K.1    Sharma, V.P.2
  • 51
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and, Kumar, S., (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 52
    • 84866790221 scopus 로고    scopus 로고
    • Using the KEGG database resource
    • Chapter 1 (Baxevanis, A.D., editor-in-chief), Wiley Online Library (doi: 10.1002/0471250953.bi0112s38)
    • Tanabe, M., and, Kanehisa, M., (2012) Using the KEGG database resource. In Current Protocols in Bioinformatics, Chapter 1 (Baxevanis, A.D., editor-in-chief), pp. 1.12.1-1.12.43. Wiley Online Library (doi: 10.1002/0471250953.bi0112s38).
    • (2012) Current Protocols in Bioinformatics , pp. 1121-11243
    • Tanabe, M.1    Kanehisa, M.2
  • 53
    • 0023857831 scopus 로고
    • Molecular genetics of the single-minded locus: A gene involved in the development of the Drosophila nervous system
    • DOI 10.1016/0092-8674(88)90537-5
    • Thomas, J.B., Crews, S.T., and, Goodman, C.S., (1988) Molecular genetics of the single-minded locus: a gene involved in the development of the Drosophila nervous system. Cell 52: 133-141. (Pubitemid 18054595)
    • (1988) Cell , vol.52 , Issue.1 , pp. 133-141
    • Thomas, J.B.1    Crews, S.T.2    Goodman, C.S.3
  • 54
    • 35148836132 scopus 로고    scopus 로고
    • The basic helix-loop-helix transcription factor family in Bombyx mori
    • DOI 10.1007/s00427-007-0184-x
    • Wang, Y., Chen, K.P., Yao, Q., Wang, W.B., and, Zhu, Z., (2007) The basic helix-loop-helix transcription factor family in Bombyx mori. Dev Genes Evol 217: 715-723. (Pubitemid 47543361)
    • (2007) Development Genes and Evolution , vol.217 , Issue.10 , pp. 715-723
    • Wang, Y.1    Chen, K.2    Yao, Q.3    Wang, W.4    Zhu, Z.5
  • 55
    • 45349099945 scopus 로고    scopus 로고
    • The basic helix-loop-helix transcription factor family in the honey bee, Apis mellifera
    • Wang, Y., Chen, K.P., Yao, Q., Wang, W.B., and, Zhu, Z., (2008) The basic helix-loop-helix transcription factor family in the honey bee, Apis mellifera. J Insect Sci 8: 40.
    • (2008) J Insect Sci , vol.8 , pp. 40
    • Wang, Y.1    Chen, K.P.2    Yao, Q.3    Wang, W.B.4    Zhu, Z.5
  • 57
    • 64949151123 scopus 로고    scopus 로고
    • A genome-wide survey on basic helix-loop-helix transcription factors in rat and mouse
    • Zheng, X., Wang, Y., Yao, Q., Yang, Z., and, Chen, K., (2009) A genome-wide survey on basic helix-loop-helix transcription factors in rat and mouse. Mamm Genome 20: 236-246.
    • (2009) Mamm Genome , vol.20 , pp. 236-246
    • Zheng, X.1    Wang, Y.2    Yao, Q.3    Yang, Z.4    Chen, K.5


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