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Volumn 48, Issue 5, 1999, Pages 501-516

Positional dependence, cliques, and predictive motifs in the bHLH protein domain

Author keywords

Basic helix loop helix proteins; bHLH; Boltzmann entropy; Cliques; Information theory; Positional dependence; Predictive motifs

Indexed keywords

DNA BINDING PROTEIN; HELIX LOOP HELIX PROTEIN;

EID: 0032925848     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/PL00006494     Document Type: Article
Times cited : (264)

References (27)
  • 1
    • 0031008399 scopus 로고    scopus 로고
    • A natural classification of the basic helix-loop-helix class of transcription factors
    • Atchley WR, Fitch WM (1997) A natural classification of the basic helix-loop-helix class of transcription factors. Proc Natl Acad Sci USA 94:5172-5176
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 5172-5176
    • Atchley, W.R.1    Fitch, W.M.2
  • 2
    • 0028832687 scopus 로고
    • Covariation of residues in the horneodomain sequence family
    • Clarke ND (1995) Covariation of residues in the horneodomain sequence family. Prot Sci 4:2269-2278
    • (1995) Prot Sci , vol.4 , pp. 2269-2278
    • Clarke, N.D.1
  • 3
    • 0032030839 scopus 로고    scopus 로고
    • Control of cell lineage-specific development and transcription by bHLH-PAS proteins
    • Crews S (1998) Control of cell lineage-specific development and transcription by bHLH-PAS proteins. Genes Dev 12:607-620
    • (1998) Genes Dev , vol.12 , pp. 607-620
    • Crews, S.1
  • 4
    • 0026546825 scopus 로고
    • Discrimination between related DNA sites by a single amino acid residue of Myc-relaled basic-helix-loop-helix proteins
    • Deng CV, Dolde D, Gillison ML, Kato GJ (1992) Discrimination between related DNA sites by a single amino acid residue of Myc-relaled basic-helix-loop-helix proteins. Proc Natl Acad Sci USA 89:599-602
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 599-602
    • Deng, C.V.1    Dolde, D.2    Gillison, M.L.3    Kato, G.J.4
  • 5
    • 0028329080 scopus 로고
    • Crystal structure of transcription factor E47: E-box recognition by a basic region helix-loop-helix dimer
    • Ellenberger T, Fass D, Arnaud M, Harrison SC (1994) Crystal structure of transcription factor E47: E-box recognition by a basic region helix-loop-helix dimer. Genes Dev 8:970-980
    • (1994) Genes Dev , vol.8 , pp. 970-980
    • Ellenberger, T.1    Fass, D.2    Arnaud, M.3    Harrison, S.C.4
  • 6
    • 0026736363 scopus 로고
    • Determination of eukaryotic protein coding regions using neural networks and information theory
    • Farber R, Lapedes A, Sirotkin K (1992) Determination of eukaryotic protein coding regions using neural networks and information theory. J Mol Biol 226:471-479
    • (1992) J Mol Biol , vol.226 , pp. 471-479
    • Farber, R.1    Lapedes, A.2    Sirotkin, K.3
  • 7
    • 0027910469 scopus 로고
    • Recognition by Max of it cognate DNA through a dimeric b/HLH/Z domain
    • Ferre-D'Amare AR, Prendergast GC, Ziff EB, Burley SK (1993) Recognition by Max of it cognate DNA through a dimeric b/HLH/Z domain. Nature 363:38-45
    • (1993) Nature , vol.363 , pp. 38-45
    • Ferre-D'Amare, A.R.1    Prendergast, G.C.2    Ziff, E.B.3    Burley, S.K.4
  • 9
    • 0026670518 scopus 로고
    • Single amino acid substitutions alter helix-loop-helix protein specificity for bases flanking the core CANNTG motif
    • Fisher F, Goding CR (1992) Single amino acid substitutions alter helix-loop-helix protein specificity for bases flanking the core CANNTG motif. EMBO J 11:410-4109
    • (1992) EMBO J , vol.11 , pp. 410-4109
    • Fisher, F.1    Goding, C.R.2
  • 10
    • 0001818891 scopus 로고
    • Measuring correlations in symbol sequences
    • Herzel H, Gross I (1995) Measuring correlations in symbol sequences. Physica A 216:518
    • (1995) Physica A , vol.216 , pp. 518
    • Herzel, H.1    Gross, I.2
  • 12
    • 0004279283 scopus 로고    scopus 로고
    • Oxford University Press, New York
    • Lewin B (1997) Genes VI. Oxford University Press, New York
    • (1997) Genes VI
    • Lewin, B.1
  • 13
    • 43949156767 scopus 로고
    • Understanding long-range correlations in DNA sequences
    • Li W, Marr TG, Kaneko K (1994). Understanding long-range correlations in DNA sequences. Physica D 75:392-416
    • (1994) Physica D , vol.75 , pp. 392-416
    • Li, W.1    Marr, T.G.2    Kaneko, K.3
  • 14
    • 0028215362 scopus 로고
    • Crystal structure of MyoD bHLH domain DNA complex: Perspectives on DNA recognition and implications for transcriptional activation
    • Ma PCM, Rould RA, Wentraub II, Pabo CO (1994) Crystal structure of MyoD bHLH domain DNA complex: Perspectives on DNA recognition and implications for transcriptional activation. Cell 77:451-459
    • (1994) Cell , vol.77 , pp. 451-459
    • Ma, P.C.M.1    Rould, R.A.2    Wentraub, I.I.3    Pabo, C.O.4
  • 15
    • 0024554495 scopus 로고
    • A new DNA binding and dimerization motif in immunoglobulin enhancer binding, daughterless, MyoD and myc proteins
    • Murre C, McCaw PS, Baltimore D (1989) A new DNA binding and dimerization motif in immunoglobulin enhancer binding, daughterless, MyoD and myc proteins. Cell 56:777-783
    • (1989) Cell , vol.56 , pp. 777-783
    • Murre, C.1    McCaw, P.S.2    Baltimore, D.3
  • 16
    • 0028307093 scopus 로고
    • Structure and function of helix-loop-helix proteins
    • Murre C, Bain G, van Dijk G, et al. (1994) Structure and function of helix-loop-helix proteins. Biochim Biophys Acta 1218:129-135
    • (1994) Biochim Biophys Acta , vol.1218 , pp. 129-135
    • Murre, C.1    Bain, G.2    Van Dijk, G.3
  • 17
    • 0029076996 scopus 로고
    • Prediction of zinc finger DNA binding protein
    • Nakata K (1995) Prediction of zinc finger DNA binding protein. Comput Appl Biosci 11:125-131
    • (1995) Comput Appl Biosci , vol.11 , pp. 125-131
    • Nakata, K.1
  • 18
    • 0030248496 scopus 로고    scopus 로고
    • Core promoters and transcriptional control
    • Novina CD, Roy AL (1996) Core promoters and transcriptional control. Trends Genet 12:351-355
    • (1996) Trends Genet , vol.12 , pp. 351-355
    • Novina, C.D.1    Roy, A.L.2
  • 19
    • 0027363416 scopus 로고
    • The loop region of the helix-loop-helix Idl is critical for its cominant negative activity
    • Pesce S, Benezra R (1993) The loop region of the helix-loop-helix Idl is critical for its cominant negative activity. Mol Cell Biol 13:7874-7880
    • (1993) Mol Cell Biol , vol.13 , pp. 7874-7880
    • Pesce, S.1    Benezra, R.2
  • 20
    • 0001775540 scopus 로고
    • Folded and unfolded proteins: An introduction
    • Creighton TE (ed) W.H. Freeman, San Francisco
    • Richards FM (1992) Folded and unfolded proteins: An introduction. In: Creighton TE (ed) Protein folding. W.H. Freeman, San Francisco, pp 1-58
    • (1992) Protein Folding , pp. 1-58
    • Richards, F.M.1
  • 21
    • 0030196610 scopus 로고    scopus 로고
    • Application of information theory to DNA sequence analysis: A review
    • Roman-Roldan R, Bernaola-Gavan P, Oliver JL (1996) Application of information theory to DNA sequence analysis: A review. Patt Recog 29:1187-1194
    • (1996) Patt Recog , vol.29 , pp. 1187-1194
    • Roman-Roldan, R.1    Bernaola-Gavan, P.2    Oliver, J.L.3
  • 23
    • 0004249246 scopus 로고
    • W.H. Freeman and Sons, San Francisco
    • Sokal RR, Rohlf FJ (1995) Biometry. W.H. Freeman and Sons, San Francisco
    • (1995) Biometry
    • Sokal, R.R.1    Rohlf, F.J.2
  • 24
    • 0028865103 scopus 로고
    • DNA binding specificities and pairing rules of the Ah receptor, ARNT and SIM proteins
    • Swanson HI, Chan WK, Bradfield CA (1995) DNA binding specificities and pairing rules of the Ah receptor, ARNT and SIM proteins. J Biol Chem 270:26292-26302
    • (1995) J Biol Chem , vol.270 , pp. 26292-26302
    • Swanson, H.I.1    Chan, W.K.2    Bradfield, C.A.3
  • 25
    • 0025341295 scopus 로고
    • Mutations that disrupt DNA binding and dimer formation in the E47 helix-loop-helix protein map to distinct domains
    • Voronova A, Baltimore D (1990) Mutations that disrupt DNA binding and dimer formation in the E47 helix-loop-helix protein map to distinct domains. Proc Natl Acad Sci USA 87:4722-4726
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 4722-4726
    • Voronova, A.1    Baltimore, D.2
  • 26
    • 84976654685 scopus 로고
    • Fast text searching allowing errors
    • Wu S, Manber U (1992) Fast text searching allowing errors. Commun ACM 35:83-91
    • (1992) Commun ACM , vol.35 , pp. 83-91
    • Wu, S.1    Manber, U.2
  • 27
    • 0030851024 scopus 로고    scopus 로고
    • The PAS domain confers target gene specificity of Drosophila bHLH/PAS proteins
    • Zelnar E, Wappner P, Shilo B-Z (1997) The PAS domain confers target gene specificity of Drosophila bHLH/PAS proteins. Genes Dev 11:2079-2089
    • (1997) Genes Dev , vol.11 , pp. 2079-2089
    • Zelnar, E.1    Wappner, P.2    Shilo, B.-Z.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.