-
1
-
-
14844363304
-
Human Cytochrome P450 Enzymes
-
3 rd ed. de Montellano, P. R. O. Springer: New York
-
Guengerich, P. Human Cytochrome P450 Enzymes. In Cytochrome P450: Structure, Mechanism, and Biochemistry, 3 rd ed.; de Montellano, P. R. O., Ed.; Springer: New York, 2005; pp 450-452.
-
(2005)
Cytochrome P450: Structure, Mechanism, and Biochemistry
, pp. 450-452
-
-
Guengerich, P.1
-
2
-
-
61649110467
-
Molecular Characterization of Aromatase
-
Hong, Y.; Li, H.; Yuan, Y. C.; Chen, S. Molecular Characterization of Aromatase Ann. N.Y. Acad. Sci. 2009, 1155, 112-120
-
(2009)
Ann. N.Y. Acad. Sci.
, vol.1155
, pp. 112-120
-
-
Hong, Y.1
Li, H.2
Yuan, Y.C.3
Chen, S.4
-
3
-
-
0028990478
-
ARIMIDEX: A new oral, once-a-day aromatase inhibitor
-
Plourde, P. V.; Dyroff, M.; Dowsett, M.; Demers, L.; Yates, R.; Webster, A. ARIMIDEX: A new oral, once-a-day aromatase inhibitor J. Steroid Biochem. Mol. Biol. 1995, 53, 175-179
-
(1995)
J. Steroid Biochem. Mol. Biol.
, vol.53
, pp. 175-179
-
-
Plourde, P.V.1
Dyroff, M.2
Dowsett, M.3
Demers, L.4
Yates, R.5
Webster, A.6
-
4
-
-
0030512277
-
Letrozole (CGS 20267), A New Oral Aromatase Inhibitor for the Treatment of Advanced Breast Cancer in Postmenopausal Patients
-
Trunet, P. F.; Bhatnagar, A. S.; Chaudri, H. A.; Hornberger, U. Letrozole (CGS 20267), A New Oral Aromatase Inhibitor for the Treatment of Advanced Breast Cancer in Postmenopausal Patients Acta Oncol. 1996, 35, 15-8
-
(1996)
Acta Oncol.
, vol.35
, pp. 15-18
-
-
Trunet, P.F.1
Bhatnagar, A.S.2
Chaudri, H.A.3
Hornberger, U.4
-
5
-
-
0028943384
-
Letrozole (CGS 20267). A phase i study of a new potent oral aromatase inhibitor of breast cancer
-
Lipton, A.; Demers, L. M.; Harvey, H. A.; Kambic, K. B.; Grossberg, H.; Brady, C.; Adlercruetz, H.; Trunet, P. F.; Santen, R. J. Letrozole (CGS 20267). A phase I study of a new potent oral aromatase inhibitor of breast cancer Cancer 1995, 75, 2132-2138
-
(1995)
Cancer
, vol.75
, pp. 2132-2138
-
-
Lipton, A.1
Demers, L.M.2
Harvey, H.A.3
Kambic, K.B.4
Grossberg, H.5
Brady, C.6
Adlercruetz, H.7
Trunet, P.F.8
Santen, R.J.9
-
6
-
-
0026446844
-
Phase i and Endocrine Study of Exemestane (FCE 24304), a New Aromatase Inhibitor, in Postmenopausal Women
-
Evans, T. R.; Di Salle, E.; Ornati, G.; Lassus, M.; Benedetti, M. S.; Pianezzola, E.; Coombes, R. C. Phase I and Endocrine Study of Exemestane (FCE 24304), a New Aromatase Inhibitor, in Postmenopausal Women Cancer Res. 1992, 52, 5933-5939
-
(1992)
Cancer Res.
, vol.52
, pp. 5933-5939
-
-
Evans, T.R.1
Di Salle, E.2
Ornati, G.3
Lassus, M.4
Benedetti, M.S.5
Pianezzola, E.6
Coombes, R.C.7
-
7
-
-
33746712854
-
Lead Optimization Providing a Series of Flavone Derivatives as Potent Nonsteroidal Inhibitors of the Cytochrome P450 Aromatase Enzyme
-
Gobbi, S.; Cavalli, A.; Rampa, A.; Belluti, F.; Piazzi, L.; Paluszcak, A.; Hartmann, R. W.; Recanatini, M.; Bisi, A. Lead Optimization Providing a Series of Flavone Derivatives as Potent Nonsteroidal Inhibitors of the Cytochrome P450 Aromatase Enzyme J. Med. Chem. 2006, 49, 4777-4780
-
(2006)
J. Med. Chem.
, vol.49
, pp. 4777-4780
-
-
Gobbi, S.1
Cavalli, A.2
Rampa, A.3
Belluti, F.4
Piazzi, L.5
Paluszcak, A.6
Hartmann, R.W.7
Recanatini, M.8
Bisi, A.9
-
8
-
-
26444502089
-
Structure-Activity Relationships of New A,D-Ring Modified Steroids as Aromatase Inhibitors: Design, Synthesis, and Biological Activity Evaluation
-
Cepa, M. M. D. S.; Tavares da Silva, E. J.; Correia-da-Silva, G.; Roleira, F. M. F.; Teixeira, N. A. A. Structure-Activity Relationships of New A,D-Ring Modified Steroids as Aromatase Inhibitors: Design, Synthesis, and Biological Activity Evaluation J. Med. Chem. 2005, 48, 6379-6385
-
(2005)
J. Med. Chem.
, vol.48
, pp. 6379-6385
-
-
Cepa, M.M.D.S.1
Tavares Da Silva, E.J.2
Correia-Da-Silva, G.3
Roleira, F.M.F.4
Teixeira, N.A.A.5
-
9
-
-
0038155337
-
First Dual Aromatase-Steroid Sulfatase Inhibitors
-
Woo, L. W. L.; Sutcliffe, O. B.; Bubert, C.; Grasso, A.; Chander, S. K.; Purohit, A.; Reed, M. J.; Potter, B. V. L First Dual Aromatase-Steroid Sulfatase Inhibitors J. Med. Chem. 2003, 46, 3193-3196
-
(2003)
J. Med. Chem.
, vol.46
, pp. 3193-3196
-
-
Woo, L.W.L.1
Sutcliffe, O.B.2
Bubert, C.3
Grasso, A.4
Chander, S.K.5
Purohit, A.6
Reed, M.J.7
Potter, B.V.L.8
-
10
-
-
33144457107
-
Novel Sulfonanilide Analogues Suppress Aromatase Expression and Activity in Breast Cancer Cells Independent of COX-2 Inhibition
-
Su, B.; Diaz-Cruz, E. S.; Landini, S.; Brueggemeier, R. W. Novel Sulfonanilide Analogues Suppress Aromatase Expression and Activity in Breast Cancer Cells Independent of COX-2 Inhibition J. Med. Chem. 2006, 49, 1413-1419
-
(2006)
J. Med. Chem.
, vol.49
, pp. 1413-1419
-
-
Su, B.1
Diaz-Cruz, E.S.2
Landini, S.3
Brueggemeier, R.W.4
-
11
-
-
59449087748
-
Fast Three Dimensional Pharmacophore Virtual Screening of New Potent Non-Steroid Aromatase Inhibitors
-
Neves, M. A. C.; Dinis, T. C. P.; Colombo, G.; Sá e Melo, M. L. Fast Three Dimensional Pharmacophore Virtual Screening of New Potent Non-Steroid Aromatase Inhibitors J. Med. Chem. 2009, 52, 143-150
-
(2009)
J. Med. Chem.
, vol.52
, pp. 143-150
-
-
Neves, M.A.C.1
Dinis, T.C.P.2
Colombo, G.3
Sá Melo E, M.L.4
-
12
-
-
34547595440
-
Dual Aromatase-Steroid Sulfatase Inhibitors
-
Woo, L. W. L.; Bubert, C.; Sutcliffe, O. B.; Smith, A.; Chander, S. K.; Mahon, M. F.; Purohit, A.; Reed, M. J.; Potter, B. V. L Dual Aromatase-Steroid Sulfatase Inhibitors J. Med. Chem. 2007, 50, 3540-3560
-
(2007)
J. Med. Chem.
, vol.50
, pp. 3540-3560
-
-
Woo, L.W.L.1
Bubert, C.2
Sutcliffe, O.B.3
Smith, A.4
Chander, S.K.5
Mahon, M.F.6
Purohit, A.7
Reed, M.J.8
Potter, B.V.L.9
-
13
-
-
79952648555
-
Hybrid Dual Aromatase-Steroid Sulfatase Inhibitors with Exquisite Picomolar Inhibitory Activity
-
Woo, L. W. L.; Bubert, C.; Purohit, A.; Potter, B. V. L Hybrid Dual Aromatase-Steroid Sulfatase Inhibitors with Exquisite Picomolar Inhibitory Activity ACS Med. Chem. Lett. 2011, 2, 243-247
-
(2011)
ACS Med. Chem. Lett.
, vol.2
, pp. 243-247
-
-
Woo, L.W.L.1
Bubert, C.2
Purohit, A.3
Potter, B.V.L.4
-
14
-
-
58149339806
-
Structural Basis for Androgen Specificity and Oestrogen Synthesis in Human Aromatase
-
Ghosh, D.; Griswold, J.; Erman, M.; Pangborn, W. Structural Basis for Androgen Specificity and Oestrogen Synthesis in Human Aromatase Nature 2009, 457, 219-223
-
(2009)
Nature
, vol.457
, pp. 219-223
-
-
Ghosh, D.1
Griswold, J.2
Erman, M.3
Pangborn, W.4
-
15
-
-
77950348123
-
X-ray structure of human aromatase reveals an androgen-specific active site
-
Ghosh, D.; Griswold, J.; Erman, M.; Pangborn, W. X-ray structure of human aromatase reveals an androgen-specific active site J. Steroid Biochem. Mol. Biol. 2010, 118, 197-202
-
(2010)
J. Steroid Biochem. Mol. Biol.
, vol.118
, pp. 197-202
-
-
Ghosh, D.1
Griswold, J.2
Erman, M.3
Pangborn, W.4
-
16
-
-
84862907043
-
Influence of the Membrane Lipophilic Environment on the Structure and on the Substrate Access/Egress Routes of the Human Aromatase Enzyme. A Computational Study
-
Sgrignani, J.; Magistrato, A. Influence of the Membrane Lipophilic Environment on the Structure and on the Substrate Access/Egress Routes of the Human Aromatase Enzyme. A Computational Study J. Chem. Inf. Model. 2012, 52, 1595-1606
-
(2012)
J. Chem. Inf. Model.
, vol.52
, pp. 1595-1606
-
-
Sgrignani, J.1
Magistrato, A.2
-
17
-
-
79957614697
-
Molecular Docking of Aromatase Inhibitors
-
Suvannang, N.; Nantasenamat, C.; Isarankura-Na-Ayudhya, C.; Prachayasittikul, V. Molecular Docking of Aromatase Inhibitors Molecules 2011, 16, 3597-3617
-
(2011)
Molecules
, vol.16
, pp. 3597-3617
-
-
Suvannang, N.1
Nantasenamat, C.2
Isarankura-Na-Ayudhya, C.3
Prachayasittikul, V.4
-
18
-
-
84857615120
-
Motion and Flexibility in Human Cytochrome P450 Aromatase
-
Jiang, W.; Ghosh, D. Motion and Flexibility in Human Cytochrome P450 Aromatase PLoS One 2012, 7, e32565
-
(2012)
PLoS One
, vol.7
, pp. 32565
-
-
Jiang, W.1
Ghosh, D.2
-
19
-
-
84867351811
-
Novel Aromatase Inhibitors by Structure-Guided Design
-
Ghosh, D.; Lo, J.; Morton, D.; Valette, D.; Xi, J.; Griswold, J.; Hubbell, S.; Egbuta, C.; Jiang, W.; An, J.; Davies, H. M. Novel Aromatase Inhibitors by Structure-Guided Design J. Med. Chem. 2012, 55, 8464-8476
-
(2012)
J. Med. Chem.
, vol.55
, pp. 8464-8476
-
-
Ghosh, D.1
Lo, J.2
Morton, D.3
Valette, D.4
Xi, J.5
Griswold, J.6
Hubbell, S.7
Egbuta, C.8
Jiang, W.9
An, J.10
Davies, H.M.11
-
20
-
-
50249114683
-
An improved relaxed complex scheme for receptor flexibility in computer-aided drug design
-
Amaro, R. E.; Baron, R.; McCammon, J. A. An improved relaxed complex scheme for receptor flexibility in computer-aided drug design J. Comput. Aided Mol. Des. 2008, 22, 693-705
-
(2008)
J. Comput. Aided Mol. Des.
, vol.22
, pp. 693-705
-
-
Amaro, R.E.1
Baron, R.2
McCammon, J.A.3
-
21
-
-
1842607357
-
Discovery of a Novel Binding Trench in HIV Integrase
-
Schames, J. R.; Henchman, R. H.; Siegel, J. S.; Sotriffer, C. A.; Ni, H.; McCammon, J. A. Discovery of a Novel Binding Trench in HIV Integrase J. Med. Chem. 2004, 47, 1879-1881
-
(2004)
J. Med. Chem.
, vol.47
, pp. 1879-1881
-
-
Schames, J.R.1
Henchman, R.H.2
Siegel, J.S.3
Sotriffer, C.A.4
Ni, H.5
McCammon, J.A.6
-
22
-
-
78149265785
-
Novel Naphthalene-Based Inhibitors of Trypanosoma brucei RNA Editing Ligase 1
-
Durrant, J. D.; Hall, L.; Swift, R. V.; Landon, M.; Schnaufer, A.; Amaro, R. E. Novel Naphthalene-Based Inhibitors of Trypanosoma brucei RNA Editing Ligase 1 PLoS Negl. Trop. Dis. 2010, 4, e803
-
(2010)
PLoS Negl. Trop. Dis.
, vol.4
, pp. 803
-
-
Durrant, J.D.1
Hall, L.2
Swift, R.V.3
Landon, M.4
Schnaufer, A.5
Amaro, R.E.6
-
23
-
-
80051587151
-
Non-Bisphosphonate Inhibitors of Isoprenoid Biosynthesis Identified via Computer-Aided Drug Design
-
Durrant, J. D.; Cao, R.; Gorfe, A. A.; Zhu, W.; Li, J.; Sankovsky, A.; Oldfield, E.; McCammon, J. A. Non-Bisphosphonate Inhibitors of Isoprenoid Biosynthesis Identified via Computer-Aided Drug Design Chem. Biol. Drug. Des. 2011, 78, 323-332
-
(2011)
Chem. Biol. Drug. Des.
, vol.78
, pp. 323-332
-
-
Durrant, J.D.1
Cao, R.2
Gorfe, A.A.3
Zhu, W.4
Li, J.5
Sankovsky, A.6
Oldfield, E.7
McCammon, J.A.8
-
24
-
-
79955967681
-
Applying Molecular Dynamics Simulations to Identify Rarely Sampled Ligand-Bound Conformational States of Undecaprenyl Pyrophosphate Synthase, an Antibacterial Target
-
Sinko, W.; de Oliveira, C.; Williams, S.; Van Wynsberghe, A.; Durrant, J. D.; Cao, R.; Oldfield, E.; McCammon, J. A. Applying Molecular Dynamics Simulations to Identify Rarely Sampled Ligand-Bound Conformational States of Undecaprenyl Pyrophosphate Synthase, an Antibacterial Target Chem. Biol. Drug. Des. 2011, 77, 412-420
-
(2011)
Chem. Biol. Drug. Des.
, vol.77
, pp. 412-420
-
-
Sinko, W.1
De Oliveira, C.2
Williams, S.3
Van Wynsberghe, A.4
Durrant, J.D.5
Cao, R.6
Oldfield, E.7
McCammon, J.A.8
-
25
-
-
84871983896
-
Antibacterial drug leads targeting isoprenoid biosynthesis
-
Zhu, W.; Zhang, Y.; Sinko, W.; Hensler, M. E.; Olson, J.; Molohon, K. J.; Lindert, S.; Cao, R.; Li, K.; Wang, K.; Wang, Y.; Liu, Y. L.; Sankovsky, A.; de Oliveira, C. A.; Mitchell, D. A.; Nizet, V.; McCammon, J. A.; Oldfield, E. Antibacterial drug leads targeting isoprenoid biosynthesis Proc. Natl. Acad. Sci. U.S.A 2013, 110, 123-128
-
(2013)
Proc. Natl. Acad. Sci. U.S.A
, vol.110
, pp. 123-128
-
-
Zhu, W.1
Zhang, Y.2
Sinko, W.3
Hensler, M.E.4
Olson, J.5
Molohon, K.J.6
Lindert, S.7
Cao, R.8
Li, K.9
Wang, K.10
Wang, Y.11
Liu, Y.L.12
Sankovsky, A.13
De Oliveira, C.A.14
Mitchell, D.A.15
Nizet, V.16
McCammon, J.A.17
Oldfield, E.18
-
26
-
-
84879147794
-
Computational identification of a transiently open L1/S3 pocket for reactivation of mutant p53
-
1407
-
Wassman, C. D.; Baronio, R.; Demir, O.; Wallentine, B. D.; Chen, C. K.; Hall, L. V.; Salehi, F.; Lin, D. W.; Chung, B. P.; Hatfield, G. W.; Chamberlin, A. R.; Luecke, H.; Lathrop, R. H.; Kaiser, P.; Amaro, R. E. Computational identification of a transiently open L1/S3 pocket for reactivation of mutant p53 Nat. Commun. 2013, 4 1407 http://www.nature.com/ncomms/journal/v4/n1/full/ ncomms2361.html
-
(2013)
Nat. Commun.
, vol.4
-
-
Wassman, C.D.1
Baronio, R.2
Demir, O.3
Wallentine, B.D.4
Chen, C.K.5
Hall, L.V.6
Salehi, F.7
Lin, D.W.8
Chung, B.P.9
Hatfield, G.W.10
Chamberlin, A.R.11
Luecke, H.12
Lathrop, R.H.13
Kaiser, P.14
Amaro, R.E.15
-
27
-
-
84862854406
-
A pH-Dependent Structural Rearrangement of the Human Aromatase Active Site: Implications in Catalysis
-
Di Nardo, G.; Breitner, M.; Sadeghi, J.; Nicolai, E.; Mei, G.; Bandino, A.; Ghosh, D.; Panzica, G.; Gilardi, G. A pH-Dependent Structural Rearrangement of the Human Aromatase Active Site: Implications in Catalysis FEBS J. 2010, 277, 175
-
(2010)
FEBS J.
, vol.277
, pp. 175
-
-
Di Nardo, G.1
Breitner, M.2
Sadeghi, J.3
Nicolai, E.4
Mei, G.5
Bandino, A.6
Ghosh, D.7
Panzica, G.8
Gilardi, G.9
-
28
-
-
84883251311
-
-
version 9.2; Schrödinger, LLC: New York.
-
Maestro, version 9.2; Schrödinger, LLC: New York, 2011.
-
(2011)
Maestro
-
-
-
29
-
-
79958766162
-
Higher order organization of human placental aromatase
-
Ghosh, D.; Jiang, W.; Lo, J.; Egbuta, C. Higher order organization of human placental aromatase Steroids 2011, 76, 753-758
-
(2011)
Steroids
, vol.76
, pp. 753-758
-
-
Ghosh, D.1
Jiang, W.2
Lo, J.3
Egbuta, C.4
-
30
-
-
33644861214
-
OPM: Orientations of Proteins in Membranes Database
-
Lomize, M. A.; Lomize, A. L.; Pogozheva, I. D.; Mosberg, H. I. OPM: Orientations of Proteins in Membranes Database Bioinformatics 2006, 22, 623-625
-
(2006)
Bioinformatics
, vol.22
, pp. 623-625
-
-
Lomize, M.A.1
Lomize, A.L.2
Pogozheva, I.D.3
Mosberg, H.I.4
-
31
-
-
79955409906
-
Anisotropic Solvent Model of the Lipid Bilayer. 2. Energetics of Insertion of Small Molecules, Peptides, and Proteins in Membranes
-
Lomize, A. L.; Pogozheva, I. D.; Mosberg, H. I. Anisotropic Solvent Model of the Lipid Bilayer. 2. Energetics of Insertion of Small Molecules, Peptides, and Proteins in Membranes J. Chem. Inf. Model. 2011, 51, 930-946
-
(2011)
J. Chem. Inf. Model.
, vol.51
, pp. 930-946
-
-
Lomize, A.L.1
Pogozheva, I.D.2
Mosberg, H.I.3
-
32
-
-
84861060898
-
-
Lomize, M. A.; Pogozheva, I. D.; Joo, H.; Mosberg, H. I.; Lomize, A. L. Nucleic Acids Res. 2011, 40, D370-D376
-
(2011)
Nucleic Acids Res.
, vol.40
-
-
Lomize, M.A.1
Pogozheva, I.D.2
Joo, H.3
Mosberg, H.I.4
Lomize, A.L.5
-
33
-
-
0032552880
-
The Preference of Tryptophan for Membrane Interfaces
-
Yau, W. M.; Wimley, W. C.; Gawrisch, K.; White, S. H. The Preference of Tryptophan for Membrane Interfaces Biochemistry 1998, 37, 14713-14718
-
(1998)
Biochemistry
, vol.37
, pp. 14713-14718
-
-
Yau, W.M.1
Wimley, W.C.2
Gawrisch, K.3
White, S.H.4
-
34
-
-
0024372724
-
Positively charged amino acid residues can act as topogenic determinants in membrane proteins
-
Boyd, D.; Beckwith, J. Positively charged amino acid residues can act as topogenic determinants in membrane proteins Proc. Natl. Acad. Sci. U.S.A. 1989, 86, 9446-9450
-
(1989)
Proc. Natl. Acad. Sci. U.S.A.
, vol.86
, pp. 9446-9450
-
-
Boyd, D.1
Beckwith, J.2
-
35
-
-
77951231142
-
Epitope Characterization of an Aromatase Monoclonal Antibody Suitable for the Assessment of Intratumoral Aromatase Activity
-
Hong, Y.; Li, H.; Ye, J.; Miki, Y.; Yuan, Y. C.; Sasano, H.; Evans, D. B.; Chen, S. Epitope Characterization of an Aromatase Monoclonal Antibody Suitable for the Assessment of Intratumoral Aromatase Activity PLoS One 2009, 4, e8050
-
(2009)
PLoS One
, vol.4
, pp. 8050
-
-
Hong, Y.1
Li, H.2
Ye, J.3
Miki, Y.4
Yuan, Y.C.5
Sasano, H.6
Evans, D.B.7
Chen, S.8
-
36
-
-
47149096704
-
CHARMM-GUI: A web-based graphical user interface for CHARMM
-
Jo, S.; Kim, T.; Iyer, V. G.; Im, W. CHARMM-GUI: a web-based graphical user interface for CHARMM J. Comput. Chem. 2008, 29, 1859-1865
-
(2008)
J. Comput. Chem.
, vol.29
, pp. 1859-1865
-
-
Jo, S.1
Kim, T.2
Iyer, V.G.3
Im, W.4
-
37
-
-
0016156587
-
Studies on the Lipid Composition of the Rat Liver Endoplasmic Reticulum after Induction with Phenobarbitone and 20-Methylcholanthrene
-
Davison, S. C.; Wills, E. D. Studies on the Lipid Composition of the Rat Liver Endoplasmic Reticulum After Induction with Phenobarbitone and 20-Methylcholanthrene Biochem. J. 1974, 140, 461-468
-
(1974)
Biochem. J.
, vol.140
, pp. 461-468
-
-
Davison, S.C.1
Wills, E.D.2
-
38
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W. L.; Chandrasekhar, J.; Madura, J. D.; Impey, R. W.; Klein, M. L. Comparison of simple potential functions for simulating liquid water J. Chem. Phys. 1983, 79, 926-935
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
39
-
-
3142714765
-
Extending the Treatment of Backbone Energetics in Protein Force Fields: Limitations of Gas-Phase Quantum Mechanics in Reproducing Protein Conformational Distributions in Molecular Dynamics Simulations
-
Mackerell, A. D., Jr.; Feig, M.; Brooks, C. L., III Extending the Treatment of Backbone Energetics in Protein Force Fields: Limitations of Gas-Phase Quantum Mechanics in Reproducing Protein Conformational Distributions in Molecular Dynamics Simulations J. Comput. Chem. 2004, 25, 1400-1415
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1400-1415
-
-
Mackerell Jr., A.D.1
Feig, M.2
Brooks III, C.L.3
-
40
-
-
0041784950
-
All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins
-
MacKerell, A. D.; Bashford, D.; Bellott; Dunbrack, R. L.; Evanseck, J. D.; Field, M. J.; Fischer, S.; Gao, J.; Guo, H.; Ha, S.; Joseph-McCarthy, D.; Kuchnir, L.; Kuczera, K.; Lau, F. T. K.; Mattos, C.; Michnick, S.; Ngo, T.; Nguyen, D. T.; Prodhom, B.; Reiher, W. E.; Roux, B.; Schlenkrich, M.; Smith, J. C.; Stote, R.; Straub, J.; Watanabe, M.; Wiórkiewicz-Kuczera, J.; Yin, D.; Karplus, M. All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins J. Phys. Chem. B 1998, 102, 3586-3616
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 3586-3616
-
-
Mackerell, A.D.1
Bashford, D.2
Bellott3
Dunbrack, R.L.4
Evanseck, J.D.5
Field, M.J.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
Joseph-Mccarthy, D.11
Kuchnir, L.12
Kuczera, K.13
Lau, F.T.K.14
Mattos, C.15
Michnick, S.16
Ngo, T.17
Nguyen, D.T.18
Prodhom, B.19
Reiher, W.E.20
Roux, B.21
Schlenkrich, M.22
Smith, J.C.23
Stote, R.24
Straub, J.25
Watanabe, M.26
Wiórkiewicz- Kuczera, J.27
Yin, D.28
Karplus, M.29
more..
-
41
-
-
77953377650
-
Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types
-
Klauda, J. B.; Venable, R. M.; Freites, J. A.; O'Connor, J. W.; Tobias, D. J.; Mondragon-Ramirez, C.; Vorobyov, I.; MacKerell, A. D., Jr.; Pastor, R. W. Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types J. Phys. Chem. B 2010, 114, 7830-7843
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 7830-7843
-
-
Klauda, J.B.1
Venable, R.M.2
Freites, J.A.3
O'Connor, J.W.4
Tobias, D.J.5
Mondragon-Ramirez, C.6
Vorobyov, I.7
Mackerell Jr., A.D.8
Pastor, R.W.9
-
42
-
-
79958841703
-
SwissParam: A Fast Force Field Generation Tool for Small Organic Molecules
-
Zoete, V.; Cuendet, M. A.; Grosdidier, A.; Michielin, O. SwissParam: A Fast Force Field Generation Tool for Small Organic Molecules J. Comput. Chem. 2011, 32, 2359-2368
-
(2011)
J. Comput. Chem.
, vol.32
, pp. 2359-2368
-
-
Zoete, V.1
Cuendet, M.A.2
Grosdidier, A.3
Michielin, O.4
-
43
-
-
79960258119
-
Improved Treatment of Ligands and Coupling Effects in Empirical Calculation and Rationalization of pKaValues
-
Søndergaard, C. R.; Olsson, M. H. M.; Rostkowski, M.; Jensen, J. H. Improved Treatment of Ligands and Coupling Effects in Empirical Calculation and Rationalization of pKaValues J. Chem. Theory Comput. 2011, 7, 2284-2295
-
(2011)
J. Chem. Theory Comput.
, vol.7
, pp. 2284-2295
-
-
Søndergaard, C.R.1
Olsson, M.H.M.2
Rostkowski, M.3
Jensen, J.H.4
-
44
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
Phillips, J. C.; Braun, R.; Wang, W.; Gumbart, J.; Tajkhorshid, E.; Villa, E.; Chipot, C.; Skeel, R. D.; Kale, L.; Schulten, K. Scalable molecular dynamics with NAMD J. Comput. Chem. 2005, 26, 1781-1802
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kale, L.9
Schulten, K.10
-
45
-
-
36449003554
-
Constant pressure molecular dynamics algorithms
-
Martyna, G. J.; Tobias, D. J.; Klein, M. L. Constant pressure molecular dynamics algorithms J. Chem. Phys. 1994, 101, 4177-4189
-
(1994)
J. Chem. Phys.
, vol.101
, pp. 4177-4189
-
-
Martyna, G.J.1
Tobias, D.J.2
Klein, M.L.3
-
46
-
-
36449007836
-
Constant pressure molecular dynamics simulation: The Langevin piston method
-
Feller, S. E.; Zhang, Y.; Pastor, R. W.; Brooks, B. R. Constant pressure molecular dynamics simulation: The Langevin piston method J. Chem. Phys. 1995, 103, 4613-4621
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 4613-4621
-
-
Feller, S.E.1
Zhang, Y.2
Pastor, R.W.3
Brooks, B.R.4
-
47
-
-
33646940952
-
Numerical Integration of the Cartesian Equations of Motion of a System with Constraints: Molecular Dynamics of n-Alkanes
-
Ryckaert, J.; Ciccotti, G.; Berendsen, H. Numerical Integration of the Cartesian Equations of Motion of a System with Constraints: Molecular Dynamics of n-Alkanes J. Comput. Phys. 1977, 23, 327-341
-
(1977)
J. Comput. Phys.
, vol.23
, pp. 327-341
-
-
Ryckaert, J.1
Ciccotti, G.2
Berendsen, H.3
-
48
-
-
33846823909
-
Particle mesh Ewald: An N·log(N) method for Ewald sums in large systems
-
Darden, T.; York, D.; Pedersen, L. Particle mesh Ewald: An N·log(N) method for Ewald sums in large systems J. Chem. Phys. 1993, 98, 10089
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 10089
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
49
-
-
0032584783
-
Reversible Peptide Folding in Solution by Molecular Dynamics Simulation
-
Daura, X.; Jaun, B.; Seebach, D.; van Gunsteren, W. F.; Mark, A. E. Reversible Peptide Folding in Solution by Molecular Dynamics Simulation J. Mol. Biol. 1998, 280, 925-932
-
(1998)
J. Mol. Biol.
, vol.280
, pp. 925-932
-
-
Daura, X.1
Jaun, B.2
Seebach, D.3
Van Gunsteren, W.F.4
Mark, A.E.5
-
50
-
-
34548667196
-
Dynamics, Hydration, and Motional Averaging of a Loop-Gated Artificial Protein Cavity: The W191G Mutant of Cytochrome c Peroxidase in Water as Revealed by Molecular Dynamics Simulations
-
Baron, R.; McCammon, J. A. Dynamics, Hydration, and Motional Averaging of a Loop-Gated Artificial Protein Cavity: The W191G Mutant of Cytochrome c Peroxidase in Water as Revealed by Molecular Dynamics Simulations Biochemistry 2007, 46, 10629-10642
-
(2007)
Biochemistry
, vol.46
, pp. 10629-10642
-
-
Baron, R.1
McCammon, J.A.2
-
51
-
-
84864486886
-
MOLEonline 2.0: Interactive web-based analysis of biomacromolecular channels
-
Berka, K.; Hanak, O.; Sehnal, D.; Banas, P.; Navratilova, V.; Jaiswal, D.; Ionescu, C. M.; Svobodova Varekova, R.; Koca, J.; Otyepka, M. MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels Nucleic Acids Res. 2012, 40, W222-W227
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Berka, K.1
Hanak, O.2
Sehnal, D.3
Banas, P.4
Navratilova, V.5
Jaiswal, D.6
Ionescu, C.M.7
Svobodova Varekova, R.8
Koca, J.9
Otyepka, M.10
-
52
-
-
84873295761
-
Multistructural hot spot characterization with FTProd
-
Votapka, L.; Amaro, R. E. Multistructural hot spot characterization with FTProd Bioinformatics 2012, 29, 393-394
-
(2012)
Bioinformatics
, vol.29
, pp. 393-394
-
-
Votapka, L.1
Amaro, R.E.2
-
53
-
-
0029878720
-
VMD: Visual molecular dynamics
-
Humphrey, W.; Dalke, A.; Schulten, K. VMD: Visual molecular dynamics J. Mol. Graph. 1996, 14, 33-38
-
(1996)
J. Mol. Graph.
, vol.14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
54
-
-
4444221565
-
UCSF Chimera-A Visualization System for Exploratory Research and Analysis
-
Pettersen, E. F.; Goddard, T. D.; Huang, C. C.; Couch, G. S.; Greenblatt, D. M.; Meng, E. C.; Ferrin, T. E. UCSF Chimera-A Visualization System for Exploratory Research and Analysis J. Comput. Chem. 2004, 25, 1605-1612
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
55
-
-
0027096408
-
Dynamic Structures of Adrenocortical Cytochrome P-450 in Proteoliposomes and Microsomes: Protein Rotation Study
-
Ohta, Y.; Kawato, S.; Tagashira, H.; Takemori, S.; Kominami, S. Dynamic Structures of Adrenocortical Cytochrome P-450 in Proteoliposomes and Microsomes: Protein Rotation Study Biochemistry 1992, 31, 12680-12687
-
(1992)
Biochemistry
, vol.31
, pp. 12680-12687
-
-
Ohta, Y.1
Kawato, S.2
Tagashira, H.3
Takemori, S.4
Kominami, S.5
-
56
-
-
80054709526
-
Membrane Position of Ibuprofen Agrees with Suggested Access Path Entrance to Cytochrome P450 2C9 Active Site
-
Berka, K.; Hendrychova, T.; Anzenbacher, P.; Otyepka, M. Membrane Position of Ibuprofen Agrees with Suggested Access Path Entrance to Cytochrome P450 2C9 Active Site J. Phys. Chem. A 2011, 115, 11248-11255
-
(2011)
J. Phys. Chem. A
, vol.115
, pp. 11248-11255
-
-
Berka, K.1
Hendrychova, T.2
Anzenbacher, P.3
Otyepka, M.4
-
57
-
-
70450248395
-
Organization of Cytochrome P450 Enzymes Involved in Sex Steroid Synthesis: PROTEIN-PROTEIN INTERACTIONS in LIPID MEMBRANES
-
Praporski, S.; Ng, S. M.; Nguyen, A. D.; Corbin, C. J.; Mechler, A.; Zheng, J.; Conley, A. J.; Martin, L. L. Organization of Cytochrome P450 Enzymes Involved in Sex Steroid Synthesis: PROTEIN-PROTEIN INTERACTIONS IN LIPID MEMBRANES J. Biol. Chem. 2009, 284, 33224-33232
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 33224-33232
-
-
Praporski, S.1
Ng, S.M.2
Nguyen, A.D.3
Corbin, C.J.4
Mechler, A.5
Zheng, J.6
Conley, A.J.7
Martin, L.L.8
-
58
-
-
0037076392
-
Single-molecule height measurements on microsomal cytochrome P450 in nanometer-scale phospholipid bilayer disks
-
Bayburt, T. H.; Sligar, S. G. Single-molecule height measurements on microsomal cytochrome P450 in nanometer-scale phospholipid bilayer disks Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 6725-6730
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 6725-6730
-
-
Bayburt, T.H.1
Sligar, S.G.2
-
59
-
-
0032170742
-
Reconstitution and Imaging of a Membrane Protein in a Nanometer-Size Phospholipid Bilayer
-
Bayburt, T. H.; Carlson, J. W.; Sligar, S. G. Reconstitution and Imaging of a Membrane Protein in a Nanometer-Size Phospholipid Bilayer J. Struct. Biol. 1998, 123, 37-44
-
(1998)
J. Struct. Biol.
, vol.123
, pp. 37-44
-
-
Bayburt, T.H.1
Carlson, J.W.2
Sligar, S.G.3
-
60
-
-
0034227263
-
Single Molecule Height Measurements on a Membrane Protein in Nanometer-Scale Phospholipid Bilayer Disks
-
Bayburt, T. H.; Carlson, J. W.; Sligar, S. G. Single Molecule Height Measurements on a Membrane Protein in Nanometer-Scale Phospholipid Bilayer Disks Langmuir 2000, 16, 5993-5997
-
(2000)
Langmuir
, vol.16
, pp. 5993-5997
-
-
Bayburt, T.H.1
Carlson, J.W.2
Sligar, S.G.3
-
61
-
-
33846339293
-
The Ins and Outs of Cytochrome P450s
-
Cojocaru, V.; Winn, P. J.; Wade, R. C. The Ins and Outs of Cytochrome P450s Biochim. Biophys. Acta 2007, 1770, 390-401
-
(2007)
Biochim. Biophys. Acta
, vol.1770
, pp. 390-401
-
-
Cojocaru, V.1
Winn, P.J.2
Wade, R.C.3
|