-
1
-
-
84862321080
-
Evaluation and properties of the budding yeast phosphoproteome
-
Amoutzias, G. D., Y. He, K. S. Lilley, Y. Van de Peer, and S. G. Oliver, 2012 Evaluation and properties of the budding yeast phosphoproteome. Mol. Cell Proteomics 11: M111 009555.
-
(2012)
Mol. Cell Proteomics
, vol.11
-
-
Amoutzias, G.D.1
He, Y.2
Lilley, K.S.3
Van de Peer, Y.4
Oliver, S.G.5
-
2
-
-
78649705725
-
Quantitative analysis of fitness and genetic interactions in yeast on a genome scale
-
Baryshnikova, A., M. Costanzo, Y. Kim, H. Ding, J. Koh et al., 2010 Quantitative analysis of fitness and genetic interactions in yeast on a genome scale. Nat. Methods 7: 1017-1024.
-
(2010)
Nat. Methods
, vol.7
, pp. 1017-1024
-
-
Baryshnikova, A.1
Costanzo, M.2
Kim, Y.3
Ding, H.4
Koh, J.5
-
3
-
-
0037312919
-
Direct kinase-to-kinase signaling mediated by the FHA phosphoprotein recognition domain of the Dun1 DNA damage checkpoint kinase
-
Bashkirov, V. I., E. V. Bashkirova, E. Haghnazari, and W. D. Heyer, 2003 Direct kinase-to-kinase signaling mediated by the FHA phosphoprotein recognition domain of the Dun1 DNA damage checkpoint kinase. Mol. Cell. Biol. 23: 1441-1452.
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 1441-1452
-
-
Bashkirov, V.I.1
Bashkirova, E.V.2
Haghnazari, E.3
Heyer, W.D.4
-
4
-
-
77953077420
-
A global protein kinase and phosphatase interaction network in yeast
-
Breitkreutz, A., H. Choi, J. R. Sharom, L. Boucher, V. Neduva et al., 2010 A global protein kinase and phosphatase interaction network in yeast. Science 328: 1043-1046.
-
(2010)
Science
, vol.328
, pp. 1043-1046
-
-
Breitkreutz, A.1
Choi, H.2
Sharom, J.R.3
Boucher, L.4
Neduva, V.5
-
5
-
-
33747078457
-
Identifying transcription factor functions and targets by phenotypic activation
-
Chua, G., Q. D. Morris, R. Sopko, M. D. Robinson, O. Ryan et al., 2006 Identifying transcription factor functions and targets by phenotypic activation. Proc. Natl. Acad. Sci. USA 103: 12045-12050.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 12045-12050
-
-
Chua, G.1
Morris, Q.D.2
Sopko, R.3
Robinson, M.D.4
Ryan, O.5
-
6
-
-
7744225947
-
Transcriptional networks: reverse-engineering gene regulation on a global scale
-
Chua, G., M. D. Robinson, Q. Morris, and T. R. Hughes, 2004 Transcriptional networks: reverse-engineering gene regulation on a global scale. Curr. Opin. Microbiol. 7: 638-646.
-
(2004)
Curr. Opin. Microbiol.
, vol.7
, pp. 638-646
-
-
Chua, G.1
Robinson, M.D.2
Morris, Q.3
Hughes, T.R.4
-
7
-
-
75649111192
-
The genetic landscape of a cell
-
Costanzo, M., A. Baryshnikova, J. Bellay, Y. Kim, E. D. Spear et al., 2010 The genetic landscape of a cell. Science 327: 425-431.
-
(2010)
Science
, vol.327
, pp. 425-431
-
-
Costanzo, M.1
Baryshnikova, A.2
Bellay, J.3
Kim, Y.4
Spear, E.D.5
-
8
-
-
55949124306
-
Significant conservation of synthetic lethal genetic interaction networks between distantly related eukaryotes
-
Dixon, S. J., Y. Fedyshyn, J. L. Koh, T. S. Prasad, C. Chahwan et al., 2008 Significant conservation of synthetic lethal genetic interaction networks between distantly related eukaryotes. Proc. Natl. Acad. Sci. USA 105: 16653-16658.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 16653-16658
-
-
Dixon, S.J.1
Fedyshyn, Y.2
Koh, J.L.3
Prasad, T.S.4
Chahwan, C.5
-
9
-
-
77951530523
-
Genotype to phenotype: a complex problem
-
Dowell, R. D., O. Ryan, A. Jansen, D. Cheung, S. Agarwala et al., 2010 Genotype to phenotype: a complex problem. Science 328: 469.
-
(2010)
Science
, vol.328
, pp. 469
-
-
Dowell, R.D.1
Ryan, O.2
Jansen, A.3
Cheung, D.4
Agarwala, S.5
-
10
-
-
0034700511
-
A role for Saccharomyces cerevisiae histone H2A in DNA repair
-
Downs, J. A., N. F. Lowndes, and S. P. Jackson, 2000 A role for Saccharomyces cerevisiae histone H2A in DNA repair. Nature 408: 1001-1004.
-
(2000)
Nature
, vol.408
, pp. 1001-1004
-
-
Downs, J.A.1
Lowndes, N.F.2
Jackson, S.P.3
-
11
-
-
0027605113
-
DNA damage and cell cycle regulation of ribonucleotide reductase
-
Elledge, S. J., Z. Zhou, J. B. Allen, and T. A. Navas, 1993 DNA damage and cell cycle regulation of ribonucleotide reductase. Bioessays 15: 333-339.
-
(1993)
Bioessays
, vol.15
, pp. 333-339
-
-
Elledge, S.J.1
Zhou, Z.2
Allen, J.B.3
Navas, T.A.4
-
12
-
-
77956020082
-
Exploring gene function and drug action using chemogenomic dosage assays
-
Ericson, E., S. Hoon, R. P. St Onge, G. Giaever, and C. Nislow, 2010 Exploring gene function and drug action using chemogenomic dosage assays. Methods Enzymol. 470: 233-255.
-
(2010)
Methods Enzymol.
, vol.470
, pp. 233-255
-
-
Ericson, E.1
Hoon, S.2
St Onge, R.P.3
Giaever, G.4
Nislow, C.5
-
13
-
-
28444478789
-
Biochemical and genetic analysis of the yeast proteome with a movable ORF collection
-
Gelperin, D. M., M. A. White, M. L. Wilkinson, Y. Kon, L. A. Kung et al., 2005 Biochemical and genetic analysis of the yeast proteome with a movable ORF collection. Genes Dev. 19: 2816-2826.
-
(2005)
Genes Dev.
, vol.19
, pp. 2816-2826
-
-
Gelperin, D.M.1
White, M.A.2
Wilkinson, M.L.3
Kon, Y.4
Kung, L.A.5
-
14
-
-
0037173615
-
Functional profiling of the Saccharomyces cerevisiae genome
-
Giaever, G., A. M. Chu, L. Ni, C. Connelly, L. Riles et al., 2002 Functional profiling of the Saccharomyces cerevisiae genome. Nature 418: 387-391.
-
(2002)
Nature
, vol.418
, pp. 387-391
-
-
Giaever, G.1
Chu, A.M.2
Ni, L.3
Connelly, C.4
Riles, L.5
-
15
-
-
34347252686
-
Large-scale high-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method
-
Gietz, R. D., and R. H. Schiestl, 2007 Large-scale high-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method. Nat. Protoc. 2: 38-41.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 38-41
-
-
Gietz, R.D.1
Schiestl, R.H.2
-
16
-
-
42349100173
-
The chemical genomic portrait of yeast: uncovering a phenotype for all genes
-
Hillenmeyer, M. E., E. Fung, J. Wildenhain, S. E. Pierce, S. Hoon et al., 2008 The chemical genomic portrait of yeast: uncovering a phenotype for all genes. Science 320: 362-365.
-
(2008)
Science
, vol.320
, pp. 362-365
-
-
Hillenmeyer, M.E.1
Fung, E.2
Wildenhain, J.3
Pierce, S.E.4
Hoon, S.5
-
17
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
Ho, Y., A. Gruhler, A. Heilbut, G. D. Bader, L. Moore et al., 2002 Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415: 180-183.
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
Bader, G.D.4
Moore, L.5
-
18
-
-
64349112353
-
A molecular barcoded yeast ORF library enables mode-of-action analysis of bioactive compounds
-
Ho, C. H., L. Magtanong, S. L. Barker, D. Gresham, S. Nishimura et al., 2009 A molecular barcoded yeast ORF library enables mode-of-action analysis of bioactive compounds. Nat. Biotechnol. 27: 369-377.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 369-377
-
-
Ho, C.H.1
Magtanong, L.2
Barker, S.L.3
Gresham, D.4
Nishimura, S.5
-
19
-
-
34147092780
-
Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae
-
Hu, Y., A. Rolfs, B. Bhullar, T. V. Murthy, C. Zhu et al., 2007 Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae. Genome Res. 17: 536-543.
-
(2007)
Genome Res.
, vol.17
, pp. 536-543
-
-
Hu, Y.1
Rolfs, A.2
Bhullar, B.3
Murthy, T.V.4
Zhu, C.5
-
20
-
-
0032483576
-
The DNA replication and damage checkpoint pathways induce transcription by inhibition of the Crt1 repressor
-
Huang, M., Z. Zhou, and S. J. Elledge, 1998 The DNA replication and damage checkpoint pathways induce transcription by inhibition of the Crt1 repressor. Cell 94: 595-605.
-
(1998)
Cell
, vol.94
, pp. 595-605
-
-
Huang, M.1
Zhou, Z.2
Elledge, S.J.3
-
21
-
-
84860848452
-
Exploring the yeast acetylome using functional genomics
-
Kaluarachchi, S., H. Friesen, A. Baryshnikova, J. P. Lambert, Y. T. Chong et al., 2012 Exploring the yeast acetylome using functional genomics. Cell 149: 936-948.
-
(2012)
Cell
, vol.149
, pp. 936-948
-
-
Kaluarachchi, S.1
Friesen, H.2
Baryshnikova, A.3
Lambert, J.P.4
Chong, Y.T.5
-
22
-
-
0029870293
-
Establishing genetic interactions by a synthetic dosage lethality phenotype
-
Kroll, E. S., K. M. Hyland, P. Hieter, and J. J. Li, 1996 Establishing genetic interactions by a synthetic dosage lethality phenotype. Genetics 143: 95-102.
-
(1996)
Genetics
, vol.143
, pp. 95-102
-
-
Kroll, E.S.1
Hyland, K.M.2
Hieter, P.3
Li, J.J.4
-
23
-
-
55449118522
-
Genome-Wide requirements for resistance to functionally distinct DNA-damaging agents
-
Lee, W., R. P. St Onge, M. Proctor, P. Flaherty, M. I. Jordan et al., 2005 Genome-Wide requirements for resistance to functionally distinct DNA-damaging agents. PLoS Genet. 1: e24.
-
(2005)
PLoS Genet.
, vol.1
-
-
Lee, W.1
St Onge, R.P.2
Proctor, M.3
Flaherty, P.4
Jordan, M.I.5
-
24
-
-
0029990930
-
The Saccharomyces cerevisiae IMP2 gene encodes a transcriptional activator that mediates protection against DNA damage caused by bleomycin and other oxidants
-
Masson, J. Y., and D. Ramotar, 1996 The Saccharomyces cerevisiae IMP2 gene encodes a transcriptional activator that mediates protection against DNA damage caused by bleomycin and other oxidants. Mol. Cell. Biol. 16: 2091-2100.
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 2091-2100
-
-
Masson, J.Y.1
Ramotar, D.2
-
25
-
-
80655143315
-
Fast-acting and nearly gratuitous induction of gene expression and protein depletion in Saccharomyces cerevisiae
-
McIsaac, R. S., S. J. Silverman, M. N. McClean, P. A. Gibney, J. Macinskas et al., 2011 Fast-acting and nearly gratuitous induction of gene expression and protein depletion in Saccharomyces cerevisiae. Mol. Biol. Cell 22: 4447-4459.
-
(2011)
Mol. Biol. Cell
, vol.22
, pp. 4447-4459
-
-
McIsaac, R.S.1
Silverman, S.J.2
McClean, M.N.3
Gibney, P.A.4
Macinskas, J.5
-
26
-
-
25444489018
-
Systematic yeast synthetic lethal and synthetic dosage lethal screens identify genes required for chromosome segregation
-
Measday, V., K. Baetz, J. Guzzo, K. Yuen, T. Kwok et al., 2005 Systematic yeast synthetic lethal and synthetic dosage lethal screens identify genes required for chromosome segregation. Proc. Natl. Acad. Sci. USA 102: 13956-13961.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 13956-13961
-
-
Measday, V.1
Baetz, K.2
Guzzo, J.3
Yuen, K.4
Kwok, T.5
-
27
-
-
48249134039
-
Mechanisms of cell cycle control revealed by a systematic and quantitative overexpression screen in S
-
Niu, W., Z. Li, W. Zhan, V. R. Iyer, and E. M. Marcotte, 2008 Mechanisms of cell cycle control revealed by a systematic and quantitative overexpression screen in S. cerevisiae. PLoS Genet. 4: e1000120.
-
(2008)
cerevisiae. PLoS Genet.
, vol.4
-
-
Niu, W.1
Li, Z.2
Zhan, W.3
Iyer, V.R.4
Marcotte, E.M.5
-
28
-
-
33746408257
-
A unique and universal molecular barcode array
-
Pierce, S. E., E. L. Fung, D. F. Jaramillo, A. M. Chu, R. W. Davis et al., 2006 A unique and universal molecular barcode array. Nat. Methods 3: 601-603.
-
(2006)
Nat. Methods
, vol.3
, pp. 601-603
-
-
Pierce, S.E.1
Fung, E.L.2
Jaramillo, D.F.3
Chu, A.M.4
Davis, R.W.5
-
29
-
-
39149125171
-
Genome-wide analysis of barcoded Saccharomyces cerevisiae gene-deletion mutants in pooled cultures
-
Pierce, S. E., R. W. Davis, C. Nislow, and G. Giaever, 2007 Genome-wide analysis of barcoded Saccharomyces cerevisiae gene-deletion mutants in pooled cultures. Nat. Protoc. 2: 2958-2974.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 2958-2974
-
-
Pierce, S.E.1
Davis, R.W.2
Nislow, C.3
Giaever, G.4
-
30
-
-
0013203966
-
FunSpec: a web-based cluster interpreter for yeast
-
Robinson, M. D., J. Grigull, N. Mohammad, and T. R. Hughes, 2002 FunSpec: a web-based cluster interpreter for yeast. BMC Bioinformatics 3: 35.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 35
-
-
Robinson, M.D.1
Grigull, J.2
Mohammad, N.3
Hughes, T.R.4
-
31
-
-
84859520339
-
Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs
-
Sharifpoor, S., D. van Dyk, M. Costanzo, A. Baryshnikova, H. Friesen et al., 2012 Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs. Genome Res. 22: 791-801.
-
(2012)
Genome Res.
, vol.22
, pp. 791-801
-
-
Sharifpoor, S.1
van Dyk, D.2
Costanzo, M.3
Baryshnikova, A.4
Friesen, H.5
-
32
-
-
70349634435
-
Quantitative phenotyping via deep barcode sequencing
-
Smith, A. M., L. E. Heisler, J. Mellor, F. Kaper, M. J. Thompson et al., 2009 Quantitative phenotyping via deep barcode sequencing. Genome Res. 19: 1836-1842.
-
(2009)
Genome Res.
, vol.19
, pp. 1836-1842
-
-
Smith, A.M.1
Heisler, L.E.2
Mellor, J.3
Kaper, F.4
Thompson, M.J.5
-
33
-
-
77955237447
-
Highly-multiplexed barcode sequencing: an efficient method for parallel analysis of pooled samples
-
Smith, A. M., L. E. Heisler, R. P. St Onge, E. Farias-Hesson, I. M. Wallace et al., 2010 Highly-multiplexed barcode sequencing: an efficient method for parallel analysis of pooled samples. Nucleic Acids Res. 38: e142.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Smith, A.M.1
Heisler, L.E.2
St Onge, R.P.3
Farias-Hesson, E.4
Wallace, I.M.5
-
34
-
-
31544482407
-
Mapping pathways and phenotypes by systematic gene overexpression
-
Sopko, R., D. Huang, N. Preston, G. Chua, B. Papp et al., 2006 Mapping pathways and phenotypes by systematic gene overexpression. Mol. Cell 21: 319-330.
-
(2006)
Mol. Cell
, vol.21
, pp. 319-330
-
-
Sopko, R.1
Huang, D.2
Preston, N.3
Chua, G.4
Papp, B.5
-
35
-
-
33846604202
-
Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions
-
St Onge, R. P., R. Mani, J. Oh, M. Proctor, E. Fung et al., 2007 Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions. Nat. Genet. 39: 199-206.
-
(2007)
Nat. Genet.
, vol.39
, pp. 199-206
-
-
St Onge, R.P.1
Mani, R.2
Oh, J.3
Proctor, M.4
Fung, E.5
-
36
-
-
33644807842
-
Synthetic genetic array analysis in Saccharomyces cerevisiae
-
Tong, A. H., and C. Boone, 2006 Synthetic genetic array analysis in Saccharomyces cerevisiae. Methods Mol. Biol. 313: 171-192.
-
(2006)
Methods Mol. Biol.
, vol.313
, pp. 171-192
-
-
Tong, A.H.1
Boone, C.2
-
37
-
-
0035861532
-
Systematic genetic analysis with ordered arrays of yeast deletion mutants
-
Tong, A. H., M. Evangelista, A. B. Parsons, H. Xu, G. D. Bader et al., 2001 Systematic genetic analysis with ordered arrays of yeast deletion mutants. Science 294: 2364-2368.
-
(2001)
Science
, vol.294
, pp. 2364-2368
-
-
Tong, A.H.1
Evangelista, M.2
Parsons, A.B.3
Xu, H.4
Bader, G.D.5
-
38
-
-
10744230485
-
Global mapping of the yeast genetic interaction network
-
Tong, A. H., G. Lesage, G. D. Bader, H. Ding, H. Xu et al., 2004 Global mapping of the yeast genetic interaction network. Science 303: 808-813.
-
(2004)
Science
, vol.303
, pp. 808-813
-
-
Tong, A.H.1
Lesage, G.2
Bader, G.D.3
Ding, H.4
Xu, H.5
-
39
-
-
48449096999
-
Yeast Barcoders: a chemogenomic application of a universal donor-strain collection carrying bar-code identifiers
-
Yan, Z., M. Costanzo, L. E. Heisler, J. Paw, F. Kaper et al., 2008 Yeast Barcoders: a chemogenomic application of a universal donor-strain collection carrying bar-code identifiers. Nat. Methods 5: 719-725.
-
(2008)
Nat. Methods
, vol.5
, pp. 719-725
-
-
Yan, Z.1
Costanzo, M.2
Heisler, L.E.3
Paw, J.4
Kaper, F.5
-
40
-
-
0037133566
-
The Dun1 checkpoint kinase phosphorylates and regulates the ribonucleotide reductase inhibitor Sml1
-
Zhao, X., and R. Rothstein, 2002 The Dun1 checkpoint kinase phosphorylates and regulates the ribonucleotide reductase inhibitor Sml1. Proc. Natl. Acad. Sci. USA 99: 3746-3751.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 3746-3751
-
-
Zhao, X.1
Rothstein, R.2
-
41
-
-
0027145127
-
DUN1 encodes a protein kinase that controls the DNA damage response in yeast
-
Zhou, Z., and S. J. Elledge, 1993 DUN1 encodes a protein kinase that controls the DNA damage response in yeast. Cell 75: 1119-1127.
-
(1993)
Cell
, vol.75
, pp. 1119-1127
-
-
Zhou, Z.1
Elledge, S.J.2
-
42
-
-
0033768106
-
Analysis of yeast protein kinases using protein chips
-
Zhu, H., J. F. Klemic, S. Chang, P. Bertone, A. Casamayor et al., 2000 Analysis of yeast protein kinases using protein chips. Nat. Genet. 26: 283-289.
-
(2000)
Nat. Genet.
, vol.26
, pp. 283-289
-
-
Zhu, H.1
Klemic, J.F.2
Chang, S.3
Bertone, P.4
Casamayor, A.5
|