Genetic components of milk Fourier-transform infrared spectra used to predict breeding values for milk composition and quality traits in dairy goats

Journal of Dairy Science

Volumn 96, Issue 9, 2013, Pages 5933-5942

  Dagnachew, B S ^a   Meuwissen, T H E ^a   Adnoy T ^a  

^a NORWEGIAN UNIVERSITY OF LIFE SCIENCES   (Norway)

Author keywords

Breeding value; Fourier transform infrared spectra; Genetic gain; Prediction error variance

Indexed keywords

ANIMALIA; CAPRA HIRCUS;

FAT; MILK PROTEIN;

ANIMAL; ANIMAL DISEASE; ARTICLE; BREEDING; BREEDING VALUE; CHEMISTRY; FEMALE; FOOD QUALITY; FOURIER-TRANSFORM INFRARED SPECTRA; GENETIC GAIN; GENETICS; GOAT; INFRARED SPECTROSCOPY; LACTATION; MALE; METHODOLOGY; MILK; PHENOTYPE; PREDICTION ERROR VARIANCE; QUANTITATIVE TRAIT; STANDARD;

BREEDING VALUE; FOURIER-TRANSFORM INFRARED SPECTRA; GENETIC GAIN; PREDICTION ERROR VARIANCE;

ANIMALS; BREEDING; FATS; FEMALE; FOOD QUALITY; GOATS; LACTATION; MALE; MILK; MILK PROTEINS; PHENOTYPE; QUANTITATIVE TRAIT, HERITABLE; SPECTROSCOPY, FOURIER TRANSFORM INFRARED;

EID: 84882856902     PISSN: 00220302     EISSN: 15253198     Source Type: Journal    
DOI: 10.3168/jds.2012-6068     Document Type: Article

References (41)

1. Afseth N.K., Martens H., Randby Å., Gidskehaug L., Narum B., Jørgensen K., Lien S., Kohler A. Predicting the fatty acid composition of milk: A comparison of two Fourier transform infrared sampling techniques. Appl. Spectrosc 2010, 64:700-707.
2. Andersen S.K., Hansen P.W., Andersen H.V. Vibrational spectroscopy in the analysis of dairy products and wine. Handbook of Vibrational Spectroscopy 2002, 3672-3681. John Wiley & Sons Ltd, West Sussex, UK. J.M. Chalmers, P.R. Griffiths (Eds.).
3. Bonfatti V., Di Martino G., Carnier P. Effectiveness of mid-infrared spectroscopy for the prediction of detailed protein composition and contents of protein genetic variants of individual milk of Simmental cows. J. Dairy Sci 2011, 94:5776-5785.
4. Cassandro M., Comin A., Ojala M., Zotto R.D., De Marchi M., Gallo L., Carnier P., Bittante G. Genetic parameters of milk coagulation properties and their relationships with milk yield and quality traits in Italian Holstein cows. J. Dairy Sci 2008, 91:371-376.
5. Cecchinato A., De Marchi M., Gallo L., Bittante G., Carnier P. Mid-infrared spectroscopy predictions as indicator traits in breeding programs for enhanced coagulation properties of milk. J. Dairy Sci 2009, 92:5304-5313.
6. Cecchinato A., De Marchi M., Penasa M., Albera A., Bittante G. Near-infrared reflectance spectroscopy predictions as indicator traits in breeding programs for enhanced beef quality. J. Anim. Sci 2011, 89:2687-2695. a.
7. Cecchinato A., Penasa M., De Marchi M., Gallo L., Bittante G., Carnier P. Genetic parameters of coagulation properties, milk yield, quality, and acidity estimated using coagulating and noncoagulating milk information in Brown Swiss and Holstein-Friesian cows. J. Dairy Sci 2011, 94:4205-4213. b.
8. Dagnachew, B. S., and T. Ådnøy. 2011. Genetic and environmental variability of goat milk FTIR spectra. Page 110 in Book of Abstracts of the 62nd Annual Meeting of the European Federation of Animal Science. Wageningen Academic Publishers, Wageningen, the Netherlands.
9. Dal Zotto R., De Marchi M., Cecchinato A., Penasa M., Cassandro M., Carnier P., Gallo L., Bittante G. Reproducibility and repeatability of measures of milk coagulation properties and predictive ability of mid-infrared reflectance spectroscopy. J. Dairy Sci 2008, 91:4103-4112.
10. De Marchi M., Fagan C.C., O'Donnell C.P., Cecchinato A., Dal Zotto R., Cassandro M., Penasa M., Bittante G. Prediction of coagulation properties, titratable acidity, and pH of bovine milk using mid-infrared spectroscopy. J. Dairy Sci 2009, 92:423-432.
11. Etzion Y., Linker R., Cogan U., Shmulevich I. Determination of protein concentration in raw milk by mid-infrared Fourier transform infrared/attenuated total reflectance spectroscopy. J. Dairy Sci 2004, 87:2779-2788.
12. Falconer D.S. Introduction to Quantitative Genetics 1989, Longman Scientific and Technical Harlow, UK. 3rd.
13. Gengler N., Coenraets P. Use of multiple-trait animal models for genetic evaluation of milk, fat and protein lactation yields of dairy in Belgium. Biotechnol. Agron. Soc. Environ 1996, 1:26-33.
14. Gilmour, A. R., B. J. Gogel, B. R. Cullis, and R. Thompson. 2009 ASReml User Guide. Release 3.0. VSN International Ltd., Hemel Hempstead, UK.
15. Gjerde B., Martens H. Predicting carcass composition of rainbow trout by near-infrared reflectance spectroscopy. J. Anim. Breed. Genet 1987, 104:137-148.
16. Gjerlaug-Enger E. Genetic analysis of meat, fat and carcass quality traits measured by rapid methods. PhD Thesis 2011, Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, Ås, Norway.
17. Goulden J.D.S. Analysis of milk by infra-red absorption. J. Dairy Res 1964, 31:273-284. 10.1017/S0022029900018203.
18. Grosclaude F., Martin P. Casein polymorphisms in the goat. Proc 1997, International Dairy Federation, Palmerston North, New Zealand, Pages 241-253.
19. Hallén E. Coagulation properties of milk: Association with milk protein composition and genetic polymorphism. Doctoral Thesis 2008, Faculty of Natural Resources and Agricultural Sciences, Department of Food Science, Swedish University of Agricultural Sciences, Uppsala, Sweden.
20. Henderson C.R. Best linear unbiased estimation and prediction under a selection model. Biometrics 1975, 31:423-447.
21. Hewavitharana A.K., van Brakel B. Fourier transform infrared spectrometric method for the rapid determination of casein in raw milk. Analyst (Lond.) 1997, 122:701-704.
22. Hubert M., Vanden Branden K. Robust methods for partial least squares regression. J. Chemometr 2003, 17:537-549.
23. Ikonen T. Possibilities of genetic improvement of milk coagulation properties of dairy cows. PhD Diss 2000, Faculty of Agriculture and Forestry, University of Helsinki, Helsinki, Finland.
24. Jaubert G. Biochemical characteristics and quality of goat milk. International Conference on Goats 1996, 71-74. CIHEAM, Beijing, China. P. Morand-Fehr (Ed.).
25. Lynch M., Walsh B. Genetics and Analysis of Quantitative Traits 1998, Sinauer Associates Inc, Sunderland, MA.
26. Madsen, P., and J. Jensen. 2008. An User's Guide to DMU. A package for analyzing multivariate mixed models. Version 6, release 4.7. University of Aarhus, Faculty of Agricultural Sciences (DFJ), Dept. Genetics and Biotechnology, Research Centre Foulum, Tjele, Denmark.
27. Manfredi, E. 2003. The tale of goat alpha-s1 casein. Proc. International Workshop on Major Genes and QTL in Sheep and Goat. CD-ROM Communication No. 2-31. INRA, Toulouse, France.
28. Martens H., Næs T. Multivariate Calibration 1989, John Wiley & Sons Ltd, Chichester, UK.
29. Mevik B.-H., Wehrens R. The pls package: Principal component and partial least squares regression in R. J. Stat. Softw 2007, 18:1-24.
30. Meyer K. Estimating variances and covariances for multivariate animal models by restricted maximum likelihood. Genet. Select. Evol 1991, 23:67-83.
31. Meyer K. WOMBAT-A tool for mixed model analyses in quantitative genetics by restricted maximum likelihood (REML). J. Zhejiang Univ. Sci. B 2007, 8:815-821.
32. Newcom D.W., Baas T.J., Stalder K.J., Schwab C.R. Comparison of three models to estimate breeding values for percentage of loin intramuscular fat in Duroc swine. J. Anim. Sci 2005, 83:750-756.
33. R Development Core Team. 2008. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. http://http://www.R-project.org.
34. Rutten M.J.M., Bovenhuis H., Heck J.M.L., van Arendonk J.A.M. Predicting bovine milk protein composition based on Fourier transform infrared spectra. J. Dairy Sci 2011, 94:5683-5690.
35. Schaeffer L.R. Sire and cow evaluation under multiple trait models. J. Dairy Sci 1984, 67:1567-1580.
36. Schopen G.C.B., Heck J.M.L., Bovenhuis H., Visker M.H.P.W., van Valenberg H.J.F., van Arendonk J.A.M. Genetic parameters for major milk proteins in Dutch Holstein-Friesians. J. Dairy Sci 2009, 92:1182-1191.
37. Sigurdsson A., Arnason T. Predicting genetic trend by uni- and multitrait models. Acta Agric. Scand. A Anim. Sci 1995, 45:1-10.
38. Soyeurt H., Dardenne P., Dehareng F., Lognay G., Veselko D., Marlier M., Bertozzi C., Mayeres P., Gengler N. Estimating fatty acid content in cow milk using mid- infrared spectrometry. J. Dairy Sci 2006, 89:3690-3695.
39. Soyeurt H., Misztal I., Gengler N. Genetic variability of milk components based on mid-infrared spectral data. J. Dairy Sci 2010, 93:1722-1728.
40. Thompson R., Meyer K. A review of theoretical aspects in the estimation of breeding values for multi-trait selection. Livest. Prod. Sci 1986, 15:299-313.
41. van de Voort F.R. Fourier transform infrared spectroscopy applied to food analysis. Food Res. Int 1992, 25:397-403.