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Volumn 23, Issue 8, 2013, Pages 1195-1209

NF-Y coassociates with FOS at promoters, enhancers, repetitive elements, and inactive chromatin regions, and is stereo-positioned with growth-controlling transcription factors

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEAR FACTOR Y; PROTEIN FOS; TRANSCRIPTION FACTOR;

EID: 84881168849     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.148080.112     Document Type: Article
Times cited : (110)

References (95)
  • 1
    • 0029127222 scopus 로고
    • A variety of dna-binding and multimeric proteins contain the histone fold motif
    • Baxevanis AD, Arents G, Moudrianakis EN, Landsman D. 1995. A variety of DNA-binding and multimeric proteins contain the histone fold motif. Nucleic Acids Res 23: 2685-2691.
    • (1995) Nucleic Acids Res , vol.23 , pp. 2685-2691
    • Baxevanis, A.D.1    Arents, G.2    Moudrianakis, E.N.3    Landsman, D.4
  • 2
    • 70350247882 scopus 로고    scopus 로고
    • The phylogeny of orthoretroviral long terminal repeats (ltrs)
    • Benachenhou F, Blikstad V, Blomberg J. 2009a. The phylogeny of orthoretroviral long terminal repeats (LTRs). Gene 448: 134-138.
    • (2009) Gene , vol.448 , pp. 134-138
    • Benachenhou, F.1    Blikstad, V.2    Blomberg, J.3
  • 3
    • 65249167467 scopus 로고    scopus 로고
    • Evolutionary conservation of orthoretroviral long terminal repeats (ltrs) and ab initio detection of single ltrs in genomic data
    • Benachenhou F, Jern P, Oja M, Sperber G, Blikstad V, Somervuo P, Kaski S, Blomberg J. 2009b. Evolutionary conservation of orthoretroviral long terminal repeats (LTRs) and ab initio detection of single LTRs in genomic data. PLoS ONE 4: E5179.
    • (2009) PLoS ONE , vol.4
    • Benachenhou, F.1    Jern, P.2    Oja, M.3    Sperber, G.4    Blikstad, V.5    Somervuo, P.6    Kaski, S.7    Blomberg, J.8
  • 4
    • 80052239700 scopus 로고    scopus 로고
    • Specific inhibition of nf-y subunits triggers different cell proliferation defects
    • Benatti P, Dolfini D, Vigano A, Ravo M,Weisz A, Imbriano C. 2011. Specific inhibition of NF-Y subunits triggers different cell proliferation defects. Nucleic Acids Res 39: 5356-5368.
    • (2011) Nucleic Acids Res , vol.39 , pp. 5356-5368
    • Benatti, P.1    Dolfini, D.2    Vigano, A.3    Ravo, M.4    Weisz, A.5    Imbriano, C.6
  • 5
    • 0346365375 scopus 로고    scopus 로고
    • The b subunit of the ccaat box binding transcription factor complex (cbf/nf-y) is essential for early mouse development and cell proliferation
    • Bhattacharya A, Deng JM, Zhang Z, Behringer R, de Crombrugghe B, Maity SN. 2003. The B subunit of the CCAAT box binding transcription factor complex (CBF/NF-Y) is essential for early mouse development and cell proliferation. Cancer Res 63: 8167-8172.
    • (2003) Cancer Res , vol.63 , pp. 8167-8172
    • Bhattacharya, A.1    Deng, J.M.2    Zhang, Z.3    Behringer, R.4    De Crombrugghe, B.5    Maity, S.N.6
  • 6
    • 0030667673 scopus 로고    scopus 로고
    • Dna binding specificity of the ccaat-binding factor cbf/nf-y
    • Bi W, Wu L, Coustry F, de Crombrugghe B, Maity SN. 1997. DNA binding specificity of the CCAAT-binding factor CBF/NF-Y. J Biol Chem 272: 26562-26572.
    • (1997) J Biol Chem , vol.272 , pp. 26562-26572
    • Bi, W.1    Wu, L.2    Coustry, F.3    De Crombrugghe, B.4    Maity, S.N.5
  • 7
    • 71749094924 scopus 로고    scopus 로고
    • Transposable elements in gene regulation and in the evolution of vertebrate genomes
    • Bourque G. 2009. Transposable elements in gene regulation and in the evolution of vertebrate genomes. Curr Opin Genet Dev 19: 607-612.
    • (2009) Curr Opin Genet Dev , vol.19 , pp. 607-612
    • Bourque, G.1
  • 9
    • 0033512307 scopus 로고    scopus 로고
    • Nf-y associates with h3-h4 tetramers and octamers by multiple mechanisms
    • Caretti G, Motta MC, Mantovani R. 1999. NF-Y associates with H3-H4 tetramers and octamers by multiple mechanisms. Mol Cell Biol 19: 8591-8603.
    • (1999) Mol Cell Biol , vol.19 , pp. 8591-8603
    • Caretti, G.1    Motta, M.C.2    Mantovani, R.3
  • 11
    • 33646813680 scopus 로고    scopus 로고
    • Repression of new p53 targets revealed by chip on chip experiments
    • Ceribelli M, Alcalay M, Vigano MA, Mantovani R. 2006. Repression of new p53 targets revealed by ChIP on chip experiments. Cell Cycle 5: 1102-1110.
    • (2006) Cell Cycle , vol.5 , pp. 1102-1110
    • Ceribelli, M.1    Alcalay, M.2    Vigano, M.A.3    Mantovani, R.4
  • 13
    • 74849135205 scopus 로고    scopus 로고
    • A perspective of promoter architecture from the ccaat box
    • Dolfini D, Zambelli F, Pavesi G, Mantovani R. 2009. A perspective of promoter architecture from the CCAAT box. Cell Cycle 8: 4127-4137.
    • (2009) Cell Cycle , vol.8 , pp. 4127-4137
    • Dolfini, D.1    Zambelli, F.2    Pavesi, G.3    Mantovani, R.4
  • 14
    • 83755185581 scopus 로고    scopus 로고
    • Nf-y and the transcriptional activation of ccaat promoters
    • Dolfini D, Gatta R, Mantovani R. 2012. NF-Y and the transcriptional activation of CCAAT promoters. Crit Rev Biochem Mol Biol 47: 29-49.
    • (2012) Crit Rev Biochem Mol Biol , vol.47 , pp. 29-49
    • Dolfini, D.1    Gatta, R.2    Mantovani, R.3
  • 15
    • 0023724555 scopus 로고
    • B-cell control region at the 59 end of a major histocompatibility complex class ii gene: Sequences and factors
    • Dorn A, Fehling HJ, Koch W, Le Meur M, Gerlinger P, Benoist C, Mathis D. 1988. B-cell control region at the 59 end of a major histocompatibility complex class II gene: Sequences and factors. Mol Cell Biol 8: 3975-3987.
    • (1988) Mol Cell Biol , vol.8 , pp. 3975-3987
    • Dorn, A.1    Fehling, H.J.2    Koch, W.3    Le Meur, M.4    Gerlinger, P.5    Benoist, C.6    Mathis, D.7
  • 16
    • 0025096742 scopus 로고
    • Serum and v-src increase the level of a ccaat-binding factor required for transcription from a retroviral long terminal repeat
    • Dutta A, Stoeckle MY, Hanafusa H. 1990. Serum and v-src increase the level of a CCAAT-binding factor required for transcription from a retroviral long terminal repeat. Genes Dev 4: 243-254.
    • (1990) Genes Dev , vol.4 , pp. 243-254
    • Dutta, A.1    Stoeckle, M.Y.2    Hanafusa, H.3
  • 17
    • 7444260846 scopus 로고    scopus 로고
    • The encode (encyclopedia of dna elements) project
    • The ENCODE Project Consortium
    • The ENCODE Project Consortium. 2004. The ENCODE (ENCyclopedia Of DNA Elements) Project. Science 306: 636-640.
    • (2004) Science , vol.306 , pp. 636-640
  • 18
    • 34250305146 scopus 로고    scopus 로고
    • Identification and analysis of functional elements in 1% of the human genome by the encode pilot project
    • The ENCODE Project Consortium
    • The ENCODE Project Consortium. 2007. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447: 799-816.
    • (2007) Nature , vol.447 , pp. 799-816
  • 19
    • 79955550445 scopus 로고    scopus 로고
    • A user's guide to the encyclopedia of dna elements (encode)
    • The ENCODE Project Consortium
    • The ENCODE Project Consortium. 2011. A user's guide to the encyclopedia of DNA elements (ENCODE). PLoS Biol 9: E1001046.
    • (2011) PLoS Biol , vol.9
  • 20
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of dna elements in the human genome
    • The ENCODE Project Consortium
    • The ENCODE Project Consortium. 2012. An integrated encyclopedia of DNA elements in the human genome. Nature 489: 57-74.
    • (2012) Nature , vol.489 , pp. 57-74
  • 22
    • 36248983372 scopus 로고    scopus 로고
    • Kruppel-like factor 4 is acetylated by p300 and regulates gene transcription via modulation of histone acetylation
    • Evans PM, Zhang W, Chen X, Yang J, Bhakat KK, Liu C. 2007. Kruppel-like factor 4 is acetylated by p300 and regulates gene transcription via modulation of histone acetylation. J Biol Chem 282: 33994-34002.
    • (2007) J Biol Chem , vol.282 , pp. 33994-34002
    • Evans, P.M.1    Zhang, W.2    Chen, X.3    Yang, J.4    Bhakat, K.K.5    Liu, C.6
  • 23
    • 0025689502 scopus 로고
    • Rous sarcoma virus enhancer factor i is a ubiquitous ccaat transcription factor highly related to cbf and nf-y
    • Faber M, Sealy L. 1990. Rous sarcoma virus enhancer factor I is a ubiquitous CCAAT transcription factor highly related to CBF and NF-Y. J Biol Chem 265: 22243-22254.
    • (1990) J Biol Chem , vol.265 , pp. 22243-22254
    • Faber, M.1    Sealy, L.2
  • 25
    • 79954477286 scopus 로고    scopus 로고
    • Nf-y affects histone acetylation and H2a.Z deposition in cell cycle promoters
    • Gatta R, Mantovani R. 2011. NF-Y affects histone acetylation and H2A.Z deposition in cell cycle promoters. Epigenetics 6: 526-534.
    • (2011) Epigenetics , vol.6 , pp. 526-534
    • Gatta, R.1    Mantovani, R.2
  • 26
    • 1342288026 scopus 로고    scopus 로고
    • Affy-Analysis of affymetrix genechip data at the probe level
    • Gautier L, Cope L, Bolstad BM, Irizarry RA. 2004. affy-Analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 20: 307-315.
    • (2004) Bioinformatics , vol.20 , pp. 307-315
    • Gautier, L.1    Cope, L.2    Bolstad, B.M.3    Irizarry, R.A.4
  • 28
    • 71149084382 scopus 로고    scopus 로고
    • Revealing global regulatory perturbations across human cancers
    • Goodarzi H, Elemento O, Tavazoie S. 2009. Revealing global regulatory perturbations across human cancers. Mol Cell 36: 900-911.
    • (2009) Mol Cell , vol.36 , pp. 900-911
    • Goodarzi, H.1    Elemento, O.2    Tavazoie, S.3
  • 29
    • 79953300078 scopus 로고    scopus 로고
    • Fimo: Scanning for occurrences of a given motif
    • Grant CE, Bailey TL, Noble WS. 2011. FIMO: Scanning for occurrences of a given motif. Bioinformatics 27: 1017-1018.
    • (2011) Bioinformatics , vol.27 , pp. 1017-1018
    • Grant, C.E.1    Bailey, T.L.2    Noble, W.S.3
  • 30
    • 0022508422 scopus 로고
    • Homologous recognition of a promoter domain common to the msv ltr and the hsv tk gene
    • Graves BJ, Johnson PF, McKnight SL. 1986. Homologous recognition of a promoter domain common to the MSV LTR and the HSV tk gene. Cell 44: 565-576.
    • (1986) Cell , vol.44 , pp. 565-576
    • Graves, B.J.1    Johnson, P.F.2    McKnight, S.L.3
  • 31
    • 0025277437 scopus 로고
    • Transcriptional activity of the rous sarcoma virus long terminal repeat correlates with binding of a factor to an upstream ccaat box in vitro
    • Greuel BT, Sealy L, Majors JE. 1990. Transcriptional activity of the Rous sarcoma virus long terminal repeat correlates with binding of a factor to an upstream CCAAT box in vitro. Virology 177: 33-43.
    • (1990) Virology , vol.177 , pp. 33-43
    • Greuel, B.T.1    Sealy, L.2    Majors, J.E.3
  • 36
    • 36048976921 scopus 로고    scopus 로고
    • Usf1 recruits histone modification complexes and is critical for maintenance of a chromatin barrier
    • Huang S, Li X, Yusufzai TM, Qiu Y, Felsenfeld G. 2007. USF1 recruits histone modification complexes and is critical for maintenance of a chromatin barrier. Mol Cell Biol 27: 7991-8002.
    • (2007) Mol Cell Biol , vol.27 , pp. 7991-8002
    • Huang, S.1    Li, X.2    Yusufzai, T.M.3    Qiu, Y.4    Felsenfeld, G.5
  • 40
    • 0035014553 scopus 로고    scopus 로고
    • Mechanism for the transcriptional repression by c-myc on pdgf b-receptor
    • Izumi H, Molander C, Penn LZ, Ishisaki A, Kohno K, Funa K. 2001. Mechanism for the transcriptional repression by c-Myc on PDGF b-receptor. J Cell Sci 114: 1533-1544.
    • (2001) J Cell Sci , vol.114 , pp. 1533-1544
    • Izumi, H.1    Molander, C.2    Penn, L.Z.3    Ishisaki, A.4    Kohno, K.5    Funa, K.6
  • 41
    • 53749083993 scopus 로고    scopus 로고
    • Seqmap: Mapping massive amount of oligonucleotides to the genome
    • Jiang H, Wong WH. 2008. SeqMap: Mapping massive amount of oligonucleotides to the genome. Bioinformatics 24: 2395-2396.
    • (2008) Bioinformatics , vol.24 , pp. 2395-2396
    • Jiang, H.1    Wong, W.H.2
  • 42
    • 64549119707 scopus 로고    scopus 로고
    • Statistical inferences for isoform expression in rna-seq
    • Jiang H, Wong WH. 2009. Statistical inferences for isoform expression in RNA-Seq. Bioinformatics 25: 1026-1032.
    • (2009) Bioinformatics , vol.25 , pp. 1026-1032
    • Jiang, H.1    Wong, W.H.2
  • 44
    • 79959840777 scopus 로고    scopus 로고
    • Kruppel-like factor 4 activates hbg gene expression in primary erythroid cells
    • Kalra IS, Alam MM, Choudhary PK, Pace BS. 2011. Kruppel-like Factor 4 activates HBG gene expression in primary erythroid cells. Br J Haematol 154: 248-259.
    • (2011) Br J Haematol , vol.154 , pp. 248-259
    • Kalra, I.S.1    Alam, M.M.2    Choudhary, P.K.3    Pace, B.S.4
  • 46
    • 0025084526 scopus 로고
    • Promoter elements and erythroid cell nuclear factors that regulate a-globin gene transcription in vitro
    • Kim CG, Swendeman SL, Barnhart KM, Sheffery M. 1990. Promoter elements and erythroid cell nuclear factors that regulate a-globin gene transcription in vitro. Mol Cell Biol 10: 5958-5966.
    • (1990) Mol Cell Biol , vol.10 , pp. 5958-5966
    • Kim, C.G.1    Swendeman, S.L.2    Barnhart, K.M.3    Sheffery, M.4
  • 47
    • 0029894080 scopus 로고    scopus 로고
    • Determination of functional domains in the c subunit of the ccaat-binding factor (cbf) necessary for formation of a cbf-dna complex: Cbf-b interacts simultaneously with both the cbf-A and cbf-c subunits to form a heterotrimeric cbf molecule
    • Kim IS, Sinha S, de Crombrugghe B, Maity SN. 1996. Determination of functional domains in the C subunit of the CCAAT-binding factor (CBF) necessary for formation of a CBF-DNA complex: CBF-B interacts simultaneously with both the CBF-A and CBF-C subunits to form a heterotrimeric CBF molecule. Mol Cell Biol 16: 4003-4013.
    • (1996) Mol Cell Biol , vol.16 , pp. 4003-4013
    • Kim, I.S.1    Sinha, S.2    De Crombrugghe, B.3    Maity, S.N.4
  • 48
    • 78651293534 scopus 로고    scopus 로고
    • Mirbase: Integrating microrna annotation and deep-sequencing data
    • Kozomara A, Griffiths-Jones S. 2011. miRBase: Integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res 39: D152-D157.
    • (2011) Nucleic Acids Res , vol.39
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 49
  • 50
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memoryefficient alignment of short dna sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 53
    • 80054084614 scopus 로고    scopus 로고
    • Pioneer factors: Directing transcriptional regulators within the chromatin environment
    • Magnani L, Eeckhoute J, Lupien M. 2011. Pioneer factors: Directing transcriptional regulators within the chromatin environment. Trends Genet 27: 465-474.
    • (2011) Trends Genet , vol.27 , pp. 465-474
    • Magnani, L.1    Eeckhoute, J.2    Lupien, M.3
  • 54
    • 55549102967 scopus 로고    scopus 로고
    • Keeping active endogenous retroviral-like elements in check: The epigenetic perspective
    • Maksakova IA, Mager DL, Reiss D. 2008. Keeping active endogenous retroviral-like elements in check: The epigenetic perspective. Cell Mol Life Sci 65: 3329-3347.
    • (2008) Cell Mol Life Sci , vol.65 , pp. 3329-3347
    • Maksakova, I.A.1    Mager, D.L.2    Reiss, D.3
  • 55
    • 2342647392 scopus 로고    scopus 로고
    • Statistical analysis of over-represented words in human promoter sequences
    • Marino-Ramirez L, Spouge JL, Kanga GC, Landsman D. 2004. Statistical analysis of over-represented words in human promoter sequences. Nucleic Acids Res 32: 949-958.
    • (2004) Nucleic Acids Res , vol.32 , pp. 949-958
    • Marino-Ramirez, L.1    Spouge, J.L.2    Kanga, G.C.3    Landsman, D.4
  • 58
    • 77951962545 scopus 로고    scopus 로고
    • Genomic binding profiles of functionally distinct rna polymerase iii transcription complexes in human cells
    • Moqtaderi Z,Wang J, Raha D, White RJ, Snyder M,Weng Z, Struhl K. 2010. Genomic binding profiles of functionally distinct RNA polymerase III transcription complexes in human cells. Nat StructMol Biol 17: 635-640.
    • (2010) Nat StructMol Biol , vol.17 , pp. 635-640
    • Moqtaderi, Z.1    Wang, J.2    Raha, D.3    White, R.J.4    Snyder, M.5    Weng, Z.6    Struhl, K.7
  • 59
    • 75149175733 scopus 로고    scopus 로고
    • Regulation of the p53 transcriptional response by structurally diverse core promoters
    • Morachis JM, Murawsky CM, Emerson BM. 2010. Regulation of the p53 transcriptional response by structurally diverse core promoters. Genes Dev 24: 135-147.
    • (2010) Genes Dev , vol.24 , pp. 135-147
    • Morachis, J.M.1    Murawsky, C.M.2    Emerson, B.M.3
  • 60
    • 76149102204 scopus 로고    scopus 로고
    • The central role of cde/chr promoter elements in the regulation of cell cycle-dependent gene transcription
    • Muller GA, Engeland K. 2010. The central role of CDE/CHR promoter elements in the regulation of cell cycle-dependent gene transcription. FEBS J 277: 877-893.
    • (2010) FEBS J , vol.277 , pp. 877-893
    • Muller, G.A.1    Engeland, K.2
  • 63
    • 44949181877 scopus 로고    scopus 로고
    • Sumoylation of kruppel-like transcription factor 5 acts as a molecular switch in transcriptional programs of lipid metabolism involving ppar-d
    • Oishi Y, Manabe I, Tobe K, Ohsugi M, Kubota T, Fujiu K, Maemura K, Kubota N, Kadowaki T, Nagai R. 2008. SUMOylation of Kruppel-like transcription factor 5 acts as a molecular switch in transcriptional programs of lipid metabolism involving PPAR-d. Nat Med 14: 656-666.
    • (2008) Nat Med , vol.14 , pp. 656-666
    • Oishi, Y.1    Manabe, I.2    Tobe, K.3    Ohsugi, M.4    Kubota, T.5    Fujiu, K.6    Maemura, K.7    Kubota, N.8    Kadowaki, T.9    Nagai, R.10
  • 68
    • 0037428397 scopus 로고    scopus 로고
    • The nf-yb/nf-yc structure gives insight into dna binding and transcription regulation by ccaat factor nf-y
    • Romier C, Cocchiarella F, Mantovani R, Moras D. 2003. The NF-YB/NF-YC structure gives insight into DNA binding and transcription regulation by CCAAT factor NF-Y. J Biol Chem 278: 1336-1345.
    • (2003) J Biol Chem , vol.278 , pp. 1336-1345
    • Romier, C.1    Cocchiarella, F.2    Mantovani, R.3    Moras, D.4
  • 70
    • 0036892499 scopus 로고    scopus 로고
    • Transcriptional regulation of porcine endogenous retroviruses released from porcine and infected human cells by heterotrimeric protein complex nf-y and impact of immunosuppressive drugs
    • Scheef G, Fischer N, Flory E, Schmitt I, Tonjes RR. 2002. Transcriptional regulation of porcine endogenous retroviruses released from porcine and infected human cells by heterotrimeric protein complex NF-Y and impact of immunosuppressive drugs. J Virol 76: 12553-12563.
    • (2002) J Virol , vol.76 , pp. 12553-12563
    • Scheef, G.1    Fischer, N.2    Flory, E.3    Schmitt, I.4    Tonjes, R.R.5
  • 72
    • 0025008168 scopus 로고
    • Sequence logos: A new way to display consensus sequences
    • Schneider TD, Stephens RM. 1990. Sequence logos: A new way to display consensus sequences. Nucleic Acids Res 18: 6097-6100.
    • (1990) Nucleic Acids Res , vol.18 , pp. 6097-6100
    • Schneider, T.D.1    Stephens, R.M.2
  • 74
    • 0028920041 scopus 로고
    • Recombinant rat cbf-c, the third subunit of cbf/nfy, allows formation of a protein-dna complex with cbf-A and cbf-b and with yeast hap2 and hap3
    • Sinha S, Maity SN, Lu J, de Crombrugghe B. 1995. Recombinant rat CBF-C, the third subunit of CBF/NFY, allows formation of a protein-DNA complex with CBF-A and CBF-B and with yeast HAP2 and HAP3. Proc Natl Acad Sci 92: 1624-1628.
    • (1995) Proc Natl Acad Sci , vol.92 , pp. 1624-1628
    • Sinha, S.1    Maity, S.N.2    Lu, J.3    De Crombrugghe, B.4
  • 75
    • 0029655406 scopus 로고    scopus 로고
    • Three classes of mutations in the a subunit of the ccaat-binding factor cbf delineate functional domains involved in the three-step assembly of the cbf-dna complex
    • Sinha S, Kim IS, Sohn KY, de Crombrugghe B, Maity SN. 1996. Three classes of mutations in the A subunit of the CCAAT-binding factor CBF delineate functional domains involved in the three-step assembly of the CBF-DNA complex. Mol Cell Biol 16: 328-337.
    • (1996) Mol Cell Biol , vol.16 , pp. 328-337
    • Sinha, S.1    Kim, I.S.2    Sohn, K.Y.3    De Crombrugghe, B.4    Maity, S.N.5
  • 76
    • 40449124692 scopus 로고    scopus 로고
    • Systematic functional characterization of cis-regulatory motifs in human core promoters
    • Sinha S, Adler AS, Field Y, Chang HY, Segal E. 2008. Systematic functional characterization of cis-regulatory motifs in human core promoters. Genome Res 18: 477-488.
    • (2008) Genome Res , vol.18 , pp. 477-488
    • Sinha, S.1    Adler, A.S.2    Field, Y.3    Chang, H.Y.4    Segal, E.5
  • 77
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • doi: 10.2202/1544-6115.0127
    • Smyth GK. 2004. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet MolBiol 3. doi: 10.2202/1544-6115.0127.
    • (2004) Stat Appl Genet MolBiol , vol.3
    • Smyth, G.K.1
  • 79
    • 33745612095 scopus 로고    scopus 로고
    • Pvclust: An r package for assessing the uncertainty in hierarchical clustering
    • Suzuki R, Shimodaira H. 2006. Pvclust: An R package for assessing the uncertainty in hierarchical clustering. Bioinformatics 22: 1540-1542.
    • (2006) Bioinformatics , vol.22 , pp. 1540-1542
    • Suzuki, R.1    Shimodaira, H.2
  • 82
    • 17144395919 scopus 로고    scopus 로고
    • Chromatin immunoprecipitation (chip) on chip experiments uncover a widespread distribution of nf-y binding ccaat sites outside of core promoters
    • Testa A, Donati G, Yan P, Romani F, Huang TH, Vigano MA, Mantovani R. 2005. Chromatin immunoprecipitation (ChIP) on chip experiments uncover a widespread distribution of NF-Y binding CCAAT sites outside of core promoters. J Biol Chem 280: 13606-13615.
    • (2005) J Biol Chem , vol.280 , pp. 13606-13615
    • Testa, A.1    Donati, G.2    Yan, P.3    Romani, F.4    Huang, T.H.5    Vigano, M.A.6    Mantovani, R.7
  • 84
    • 0032167456 scopus 로고    scopus 로고
    • Cloning and characterization of mctbp2, a corepressor that associates with basic kruppel-Like factor and other mammalian transcriptional regulators
    • Turner J, Crossley M. 1998. Cloning and characterization of mCtBP2, a corepressor that associates with basic Kruppel-like factor and other mammalian transcriptional regulators. EMBO J 17: 5129-5140.
    • (1998) EMBO J , vol.17 , pp. 5129-5140
    • Turner, J.1    Crossley, M.2
  • 85
    • 0034178250 scopus 로고    scopus 로고
    • Human kruppel-like factor 8: A caccc-box binding protein that associates with ctbp and represses transcription
    • van Vliet J, Turner J, Crossley M. 2000. Human Kruppel-like factor 8: A CACCC-box binding protein that associates with CtBP and represses transcription. Nucleic Acids Res 28: 1955-1962.
    • (2000) Nucleic Acids Res , vol.28 , pp. 1955-1962
    • Van Vliet, J.1    Turner, J.2    Crossley, M.3
  • 86
    • 8644240108 scopus 로고    scopus 로고
    • Recruitment of histone modifications by usf proteins at a vertebrate barrier element
    • West AG, Huang S, Gaszner M, Litt MD, Felsenfeld G. 2004. Recruitment of histone modifications by USF proteins at a vertebrate barrier element. Mol Cell 16: 453-463.
    • (2004) Mol Cell , vol.16 , pp. 453-463
    • West, A.G.1    Huang, S.2    Gaszner, M.3    Litt, M.D.4    Felsenfeld, G.5
  • 87
    • 0025875022 scopus 로고
    • Cloning of cdna for natural killer cell stimulatory factor, a heterodimeric cytokine with multiple biologic effects on t and natural killer cells
    • Wolf SF, Temple PA, Kobayashi M, Young D, Dicig M, Lowe L, Dzialo R, Fitz L, Ferenz C, Hewick RM, et al. 1991. Cloning of cDNA for natural killer cell stimulatory factor, a heterodimeric cytokine with multiple biologic effects on T and natural killer cells. J Immunol 146: 3074-3081.
    • (1991) J Immunol , vol.146 , pp. 3074-3081
    • Wolf, S.F.1    Temple, P.A.2    Kobayashi, M.3    Young, D.4    Dicig, M.5    Lowe, L.6    Dzialo, R.7    Fitz, L.8    Ferenz, C.9    Hewick, R.M.10
  • 88
    • 33847057887 scopus 로고    scopus 로고
    • Relationships between p63 binding, dna sequence, transcription activity, and biological function in human cells
    • Yang A, Zhu Z, Kapranov P, McKeon F, Church GM, Gingeras TR, Struhl K. 2006. Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells. Mol Cell 24: 593-602.
    • (2006) Mol Cell , vol.24 , pp. 593-602
    • Yang, A.1    Zhu, Z.2    Kapranov, P.3    McKeon, F.4    Church, G.M.5    Gingeras, T.R.6    Struhl, K.7
  • 90
    • 1042301369 scopus 로고    scopus 로고
    • Requirement of kruppel-like factor 4 in preventing entry into mitosis following dna damage
    • Yoon HS, Yang VW. 2004. Requirement of Kruppel-like factor 4 in preventing entry into mitosis following DNA damage. J Biol Chem 279: 5035-5041.
    • (2004) J Biol Chem , vol.279 , pp. 5035-5041
    • Yoon, H.S.1    Yang, V.W.2
  • 91
    • 0033815971 scopus 로고    scopus 로고
    • Atf6 activated by proteolysis binds in the presence of nf-y (cbf) directly to the cis-Acting element responsible for the mammalian unfolded protein response
    • Yoshida H, Okada T, Haze K, Yanagi H, Yura T, Negishi M, Mori K. 2000. ATF6 activated by proteolysis binds in the presence of NF-Y (CBF) directly to the cis-Acting element responsible for the mammalian unfolded protein response. Mol Cell Biol 20: 6755-6767.
    • (2000) Mol Cell Biol , vol.20 , pp. 6755-6767
    • Yoshida, H.1    Okada, T.2    Haze, K.3    Yanagi, H.4    Yura, T.5    Negishi, M.6    Mori, K.7
  • 92
    • 27444433079 scopus 로고    scopus 로고
    • The long terminal repeat (ltr) of erv-9 human endogenous retrovirus binds to nf-y in the assembly of an active ltr enhancer complex nf-y/mzf1/gata-2
    • Yu X, Zhu X, Pi W, Ling J, Ko L, Takeda Y, Tuan D. 2005. The long terminal repeat (LTR) of ERV-9 human endogenous retrovirus binds to NF-Y in the assembly of an active LTR enhancer complex NF-Y/MZF1/GATA-2. J Biol Chem 280: 35184-35194.
    • (2005) J Biol Chem , vol.280 , pp. 35184-35194
    • Yu, X.1    Zhu, X.2    Pi, W.3    Ling, J.4    Ko, L.5    Takeda, Y.6    Tuan, D.7
  • 93
    • 67849114236 scopus 로고    scopus 로고
    • Pscan: Finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes
    • Zambelli F, Pesole G, Pavesi G. 2009. Pscan: Finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes. Nucleic Acids Res 37: W247-W252.
    • (2009) Nucleic Acids Res , vol.37
    • Zambelli, F.1    Pesole, G.2    Pavesi, G.3
  • 94
    • 80455144479 scopus 로고    scopus 로고
    • Pioneer transcription factors: Establishing competence for gene expression
    • Zaret KS, Carroll JS. 2011. Pioneer transcription factors: Establishing competence for gene expression. Genes Dev 25: 2227-2241.
    • (2011) Genes Dev , vol.25 , pp. 2227-2241
    • Zaret, K.S.1    Carroll, J.S.2
  • 95
    • 0033582703 scopus 로고    scopus 로고
    • Nf-y histone fold a1 helices help impart ccaat specificity
    • Zemzoumi K, Frontini M, Bellorini M, Mantovani R. 1999. NF-Y histone fold a1 helices help impart CCAAT specificity. J Mol Biol 286: 327-337.
    • (1999) J Mol Biol , vol.286 , pp. 327-337
    • Zemzoumi, K.1    Frontini, M.2    Bellorini, M.3    Mantovani, R.4


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