-
1
-
-
84873601673
-
Good codons, bad transcript: Large reductions in gene expression and fitness arising from synonymous mutations in a key enzyme
-
Agashe, D., N. C. Martinez-Gomez, D. A. Drummond, and C. J. Marx, 2013 Good codons, bad transcript: large reductions in gene expression and fitness arising from synonymous mutations in a key enzyme. Mol. Biol. Evol. 30: 549-560.
-
(2013)
Mol. Biol. Evol
, vol.30
, pp. 549-560
-
-
Agashe, D.1
Martinez-Gomez, N.C.2
Drummond, D.A.3
Marx, C.J.4
-
2
-
-
0028797897
-
Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA
-
Akashi, H., 1995 Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA. Genetics 139: 1067-1076
-
(1995)
Genetics
, vol.139
, pp. 1067-1076
-
-
Akashi, H.1
-
3
-
-
0029985179
-
Molecular evolution between Drosophila melanogaster and D.simulans:Reduced codon bias, faster rates of amino-acid substitution, and larger proteins in D.melanogaster
-
Akashi, H., 1996 Molecular evolution between Drosophila melanogaster and D. simulans: reduced codon bias, faster rates of amino-acid substitution, and larger proteins in D. melanogaster. Genetics 144: 1297-1307.
-
(1996)
Genetics
, vol.144
, pp. 1297-1307
-
-
Akashi, H.1
-
4
-
-
0032953881
-
Inferring the fitness effects of DNA polymorphisms and divergence data: Statistical power to detect directional selection under stationarity and free recombination
-
Akashi, H., 1999 Inferring the fitness effects of DNA polymorphisms and divergence data: statistical power to detect directional selection under stationarity and free recombination. Genetics 151: 221-238.
-
(1999)
Genetics
, vol.151
, pp. 221-238
-
-
Akashi, H.1
-
5
-
-
0022470005
-
The maintenance of polygenic variation through a balance between mutation and stabilizing selection
-
Barton, N. H., 1986 The maintenance of polygenic variation through a balance between mutation and stabilizing selection. Genet. Res. 47: 209-216.
-
(1986)
Genet. Res
, vol.47
, pp. 209-216
-
-
Barton, N.H.1
-
6
-
-
0024423459
-
The divergence of a polygenic system subject to stabilizing selection and drift
-
Barton, N. H., 1989 The divergence of a polygenic system subject to stabilizing selection and drift. Genet. Res. 54: 59-77.
-
(1989)
Genet. Res
, vol.54
, pp. 59-77
-
-
Barton, N.H.1
-
7
-
-
0025941139
-
The selection-mutation-drift theory of synonomous codon usage
-
Bulmer, M. G., 1991 The selection-mutation-drift theory of synonomous codon usage. Genetics 129: 897-907.
-
(1991)
Genetics
, vol.129
, pp. 897-907
-
-
Bulmer, M.G.1
-
8
-
-
0001749932
-
The elimination of the unfit as illustrated by the introduced sparrow, Passer domesticus
-
Bumpus, H. C., 1899 The elimination of the unfit as illustrated by the introduced sparrow, Passer domesticus. Biol. Lectures Woods Hole Marine Biol. Station 6: 209-226.
-
(1899)
Biol. Lectures Woods Hole Marine Biol. Station
, vol.6
, pp. 209-226
-
-
Bumpus, H.C.1
-
9
-
-
0003531832
-
The Mathematical Theory of Selection, Recombination and Mutation
-
Chichester, UK
-
Bürger, R., 2000 The Mathematical Theory of Selection, Recombination and Mutation, Wiley, Chichester, UK.
-
(2000)
Wiley
-
-
Bürger, R.1
-
10
-
-
0027943991
-
On the distribution of the mean and variance of a quantitative trait under mutation-selectiondrift balance
-
Bürger, R., and R. Lande, 1994 On the distribution of the mean and variance of a quantitative trait under mutation-selectiondrift balance. Genetics 138: 901-912.
-
(1994)
Genetics
, vol.138
, pp. 901-912
-
-
Bürger, R.1
Lande, R.2
-
11
-
-
84881069976
-
The manifestation of phenotypic evolution at constituent loci.I.Stabilizing selection
-
Campbell, R. B., 1984 The manifestation of phenotypic evolution at constituent loci. I. Stabilizing selection. Evolution 38: 1033- 1038.
-
(1984)
Evolution
, vol.38
, pp. 1033
-
-
Campbell, R.B.1
-
12
-
-
0002274206
-
Eukaryote gene numbers,non-coding DNA and genome size in The Evolution of Genome Size,edited by T.Cavalier-Smith
-
Chichester, UK
-
Cavalier-Smith, T., 1985 Eukaryote gene numbers, non-coding DNA and genome size, pp. 69-103 in The Evolution of Genome Size, edited by T. Cavalier-Smith. Wiley, Chichester, UK.
-
(1985)
Wiley
, pp. 69-103
-
-
Cavalier-Smith, T.1
-
13
-
-
0025079181
-
Mutation-selection balance and the evolutionary advantage of sex and recombination
-
Charlesworth, B., 1990 Mutation-selection balance and the evolutionary advantage of sex and recombination. Genet. Res. 55: 199-221.
-
(1990)
Genet. Res
, vol.55
, pp. 199-221
-
-
Charlesworth, B.1
-
14
-
-
84881058210
-
Why we are not dead 100 times over
-
in press
-
Charlesworth, B., 2013 Why we are not dead 100 times over. Evolution. (in press).
-
(2013)
Evolution
-
-
Charlesworth, B.1
-
15
-
-
84881044459
-
-
Charlesworth, Elements of Evolutionary Genetics. Roberts, Greenwood Village, CO
-
Charlesworth, B., and D. Charlesworth, 2010 Elements of Evolutionary Genetics. Roberts, Greenwood Village, CO.
-
(2010)
And D
-
-
Charlesworth, B.1
-
16
-
-
77957744647
-
Genetic recombination and molecular evolution
-
Charlesworth, B., A. J. Betancourt, V. B. Kaiser, and I. Gordo, 2010 Genetic recombination and molecular evolution. Cold Spring Harb. Symp. Quant. Biol. 74: 177-186.
-
(2010)
Cold Spring Harb. Symp. Quant. Biol
, vol.74
, pp. 177-186
-
-
Charlesworth, B.1
Betancourt, A.J.2
Kaiser, V.B.3
Gordo, I.4
-
17
-
-
0031711923
-
Should we expect substitution rate to depend on population size?
-
Cherry, J. L., 1998 Should we expect substitution rate to depend on population size? Genetics 150: 911-919.
-
(1998)
Genetics
, vol.150
, pp. 911-919
-
-
Cherry, J.L.1
-
18
-
-
0033767383
-
The correlation between intron length and recombination in Drosophila: Equilibrium between mutational and selective forces
-
Comeron, J. M., and M. Kreitman, 2000 The correlation between intron length and recombination in Drosophila: equilibrium between mutational and selective forces. Genetics 156: 1175- 1190.
-
(2000)
Genetics
, vol.156
, pp. 1175
-
-
Comeron, J.M.1
Kreitman, M.2
-
19
-
-
27844577664
-
Intragenic Hill-Robertson interference influences selection on synonymous mutations in Drosophila
-
Comeron, J. M., and T. B. Guthrie, 2005 Intragenic Hill-Robertson interference influences selection on synonymous mutations in Drosophila. Mol. Biol. Evol. 22: 2519-2530.
-
(2005)
Mol. Biol. Evol
, vol.22
, pp. 2519-2530
-
-
Comeron, J.M.1
Guthrie, T.B.2
-
20
-
-
33750021975
-
Selection intensity on preferred codons correlates with overall codon usage bias in Caenorhabitis remanei
-
Cutter, A. D., and B. Charlesworth, 2006 Selection intensity on preferred codons correlates with overall codon usage bias in Caenorhabitis remanei. Curr. Biol. 16: 2053-2057.
-
(2006)
Curr. Biol
, vol.16
, pp. 2053-2057
-
-
Cutter, A.D.1
Charlesworth, B.2
-
21
-
-
0042737527
-
A first study of natural selection in Helix arbustorum (Helicogena)
-
Di Cesnola, A. P., 1907 A first study of natural selection in Helix arbustorum (Helicogena). Biometrika 5: 387-399.
-
(1907)
Biometrika
, vol.5
, pp. 387-399
-
-
Di Cesnola, A.P.1
-
22
-
-
33750465172
-
The fate of transposable elements in asexual populations
-
Dolgin, E. S., and B. Charlesworth, 2006 The fate of transposable elements in asexual populations. Genetics 174: 817-827.
-
(2006)
Genetics
, vol.174
, pp. 817-827
-
-
Dolgin, E.S.1
Charlesworth, B.2
-
23
-
-
67649963928
-
Mathematical Population Genetics.1
-
Springer, New York
-
Ewens, W. J., 2004 Mathematical Population Genetics. 1. Theoretical Introduction. Springer, New York.
-
(2004)
Theoretical Introduction
-
-
Ewens, W.J.1
-
24
-
-
68949202924
-
Estimating the rate of adaptive mutations in the presence of slightly deleterious mutations and population size change
-
Eyre-Walker, A., and P. D. Keightley, 2009 Estimating the rate of adaptive mutations in the presence of slightly deleterious mutations and population size change. Mol. Biol. Evol. 26: 2097- 2108.
-
(2009)
Mol. Biol. Evol
, vol.26
, pp. 2097
-
-
Eyre-Walker, A.1
Keightley, P.D.2
-
26
-
-
0001122789
-
The distribution of gene ratios for rare mutations
-
Fisher, R. A., 1930a The distribution of gene ratios for rare mutations. Proc. R. Soc. Edinb. 50: 205-220.
-
(1930)
Proc. R. Soc. Edinb
, vol.50
, pp. 205-220
-
-
Fisher, R.A.1
-
27
-
-
0003460359
-
The Genetical Theory of Natural Selection
-
Oxford, UK
-
Fisher, R. A., 1930b The Genetical Theory of Natural Selection. Oxford University Press, Oxford, UK.
-
(1930)
Oxford University Press
-
-
Fisher, R.A.1
-
28
-
-
34250482960
-
On territorial behavior and other factors influencing habitat distribution in birds
-
Fretwell, S. D., and H. J. Lucas, 1970 On territorial behavior and other factors influencing habitat distribution in birds. Acta Biotheor. 19: 16-36.
-
(1970)
Acta Biotheor
, vol.19
, pp. 16-36
-
-
Fretwell, S.D.1
Lucas, H.J.2
-
29
-
-
33644780844
-
GC-biased segregation of non-coding polymorphisms in Drosophila
-
Galtier, N., E. Bazin, and N. Bierne, 2006 GC-biased segregation of non-coding polymorphisms in Drosophila. Genetics 172: 221- 228.
-
(2006)
Genetics
, vol.172
, pp. 221
-
-
Galtier, N.1
Bazin, E.2
Bierne, N.3
-
30
-
-
33846047594
-
Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila
-
Haag-Liautard, C., M. Dorris, X. Maside, S. Macaskill, D. L. Halligan et al., 2007 Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila. Nature 445: 82-85.
-
(2007)
Nature
, vol.445
, pp. 82-85
-
-
Haag-Liautard, C.1
Dorris, M.2
Maside, X.3
Macaskill, S.4
Halligan, D.L.5
-
31
-
-
0001477874
-
The measurement of natural selection
-
Haldane, J. B. S., 1954 The measurement of natural selection. Caryologia 6 (Suppl.): 480-487.
-
(1954)
Caryologia
, vol.6
, Issue.SUPPL.
, pp. 480-487
-
-
Haldane, J.B.S.1
-
32
-
-
78650459424
-
Biased gene conversion affects patterns of codon usage and amino acid usage in the Saccharomyces sensu stricto group of yeasts
-
Harrison, R. J., and B. Charlesworth, 2011 Biased gene conversion affects patterns of codon usage and amino acid usage in the Saccharomyces sensu stricto group of yeasts. Mol. Biol. Evol. 28: 117-129.
-
(2011)
Mol. Biol. Evol
, vol.28
, pp. 117-129
-
-
Harrison, R.J.1
Charlesworth, B.2
-
33
-
-
0027978722
-
Selection intensity for codon bias
-
Hartl, D. L., E. N. Moriyama, and S. A. Sawyer, 1994 Selection intensity for codon bias. Genetics 138: 227-234.
-
(1994)
Genetics
, vol.138
, pp. 227-234
-
-
Hartl, D.L.1
Moriyama, E.N.2
Sawyer, S.A.3
-
35
-
-
79955468851
-
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
-
Hu, T. T., P. Pattyn, E. G. Bakker, J. Cao, J.-F. Cheng et al., 2011 The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat. Genet. 43: 476-483.
-
(2011)
Nat. Genet
, vol.43
, pp. 476-483
-
-
Hu, T.T.1
Pattyn, P.2
Bakker, E.G.3
Cao, J.4
Cheng, J.-F.5
-
36
-
-
0032893933
-
Beneficial mutations, hitchhiking and the evolution of mutation rates in sexual populations
-
Johnson, T., 1999 Beneficial mutations, hitchhiking and the evolution of mutation rates in sexual populations. Genetics 151: 1621-1631.
-
(1999)
Genetics
, vol.151
, pp. 1621-1631
-
-
Johnson, T.1
-
37
-
-
37249042614
-
Joint inference of the distribution of fitness effects of deleterious mutations and population demography based on nucleotide polymorphism frequencies
-
Keightley, P. D., and A. Eyre-Walker, 2007 Joint inference of the distribution of fitness effects of deleterious mutations and population demography based on nucleotide polymorphism frequencies. Genetics 177: 2251-2261.
-
(2007)
Genetics
, vol.177
, pp. 2251-2261
-
-
Keightley, P.D.1
Eyre-Walker, A.2
-
38
-
-
67650064592
-
Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines
-
Keightley, P. D., M. Trivedi, M. Thomson, F. Oliver, S. Kumar et al., 2009 Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines. Genome Res. 19: 1195-1201.
-
(2009)
Genome Res
, vol.19
, pp. 1195-1201
-
-
Keightley, P.D.1
Trivedi, M.2
Thomson, M.3
Oliver, F.4
Kumar, S.5
-
39
-
-
0342947190
-
Possibility of extensive neutral evolution under stabilizing selection with special reference to non-random usage of synonymous codons
-
Kimura, M., 1981 Possibility of extensive neutral evolution under stabilizing selection with special reference to non-random usage of synonymous codons. Proc. Natl. Acad. Sci. USA 78: 454-458.
-
(1981)
Proc. Natl. Acad. Sci. USA
, vol.78
, pp. 454-458
-
-
Kimura, M.1
-
40
-
-
0004046696
-
The Neutral Theory of Molecular Evolution
-
Cambridge, UK
-
Kimura, M., 1983 The Neutral Theory of Molecular Evolution. Cambridge University Press, Cambridge, UK.
-
(1983)
Cambridge University Press
-
-
Kimura, M.1
-
41
-
-
0000977985
-
The mutational load with epistatic gene interactions in fitness
-
Kimura, M., and T. Maruyama, 1966 The mutational load with epistatic gene interactions in fitness. Genetics 54: 1303-1312.
-
(1966)
Genetics
, vol.54
, pp. 1303-1312
-
-
Kimura, M.1
Maruyama, T.2
-
42
-
-
0035093219
-
The strength of phenotypic selection in natural populations
-
Kingsolver, J. G., H. E. Hoekstra, J. M. Hoekstra, D. Berrigan, S. N. Vignieri et al., 2001 The strength of phenotypic selection in natural populations. Am. Nat. 157: 245-261.
-
(2001)
Am. Nat
, vol.157
, pp. 245-261
-
-
Kingsolver, J.G.1
Hoekstra, H.E.2
Hoekstra, J.M.3
Berrigan, D.4
Vignieri, S.N.5
-
43
-
-
0020360884
-
Selection against harmful mutations in large sexual and asexual populations
-
Kondrashov, A. S., 1982 Selection against harmful mutations in large sexual and asexual populations. Genet. Res. 44: 325-332.
-
(1982)
Genet. Res
, vol.44
, pp. 325-332
-
-
Kondrashov, A.S.1
-
44
-
-
0021733694
-
Deleterious mutations as an evolutionary factor The advantage of recombination
-
Kondrashov, A. S., 1984 Deleterious mutations as an evolutionary factor. 1. The advantage of recombination. Genet. Res. 44: 199- 217.
-
(1984)
Genet. Res
, vol.44
, pp. 199
-
-
Kondrashov, A.S.1
-
45
-
-
0023737547
-
Deleterious mutations and the evolution of sexual reproduction
-
Kondrashov, A. S., 1988 Deleterious mutations and the evolution of sexual reproduction. Nature 336: 435-440.
-
(1988)
Nature
, vol.336
, pp. 435-440
-
-
Kondrashov, A.S.1
-
46
-
-
0029130141
-
Contamination of the genome by very slightly deleterious mutations: Why have we not died 100 times over
-
Kondrashov, A. S., 1995 Contamination of the genome by very slightly deleterious mutations: Why have we not died 100 times over? J. Theor. Biol. 175: 583-594.
-
(1995)
J. Theor. Biol
, vol.175
, pp. 583-594
-
-
Kondrashov, A.S.1
-
47
-
-
33644636376
-
Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites
-
Kondrashov, F. A., A. Y. Ogurtsov, and A. S. Kondrashov, 2006 Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites. J. Theor. Biol. 240: 616-626.
-
(2006)
J. Theor. Biol
, vol.240
, pp. 616-626
-
-
Kondrashov, F.A.1
Ogurtsov, A.Y.2
Kondrashov, A.S.3
-
48
-
-
0017144189
-
Natural selection and random genetic drift in phenotypic evolution
-
Lande, R., 1976 Natural selection and random genetic drift in phenotypic evolution. Evolution 30: 314-334.
-
(1976)
Evolution
, vol.30
, pp. 314-334
-
-
Lande, R.1
-
49
-
-
84876581271
-
Strong mutational bias towards deletions in the Drosophila melanogaster genome is compensated by selection
-
Leushkin, E. V., G. A. Bazykin, and A. S. Kondrashov, 2013 Strong mutational bias towards deletions in the Drosophila melanogaster genome is compensated by selection. Genome Biol. Evol. 5: 514-524.
-
(2013)
Genome Biol. Evol
, vol.5
, pp. 514-524
-
-
Leushkin, E.V.1
Bazykin, G.A.2
Kondrashov, A.S.3
-
50
-
-
0023064998
-
Models of nearly neutral mutations with particular implications for non-random usage of synonymous codons
-
Li, W.-H., 1987 Models of nearly neutral mutations with particular implications for non-random usage of synonymous codons. J. Mol. Evol. 24: 337-345.
-
(1987)
J. Mol. Evol
, vol.24
, pp. 337-345
-
-
Li, W.-H.1
-
51
-
-
0037197986
-
Intron evolution as a population-genetic process
-
Lynch, M., 2002 Intron evolution as a population-genetic process. Proc. Natl. Acad. Sci. USA 99: 6118-6123.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 6118-6123
-
-
Lynch, M.1
-
52
-
-
34250709215
-
The Origins of Genome Architecture
-
Sunderland, MA
-
Lynch, M., 2007 The Origins of Genome Architecture. Sinauer, Sunderland, MA.
-
(2007)
Sinauer
-
-
Lynch, M.1
-
53
-
-
80052736277
-
The lower bound to the evolution of mutation rates
-
Lynch, M., 2011 The lower bound to the evolution of mutation rates. Genome Biol. Evol. 3: 1107-1118.
-
(2011)
Genome Biol. Evol
, vol.3
, pp. 1107-1118
-
-
Lynch, M.1
-
54
-
-
0032749124
-
A population genetic model for the evolution of synonymous codon usage: Patterns and predictions
-
McVean, G. A. T., and B. Charlesworth, 1999 A population genetic model for the evolution of synonymous codon usage: patterns and predictions. Genet. Res. 74: 145-158.
-
(1999)
Genet. Res
, vol.74
, pp. 145-158
-
-
McVean, G.A.T.1
Charlesworth, B.2
-
55
-
-
0002636459
-
AnnotationoftheDrosophila melanogaster euchromatic genome: A systematic review
-
Research0083
-
Misra, S., M. A. Crosby, C. J. Mungall, B. B. Matthews, K. S. Campbell et al., 2002 AnnotationoftheDrosophila melanogaster euchromatic genome: a systematic review. Gen. Biol. 3: Research0083.
-
(2002)
Gen. Biol. 3
-
-
Misra, S.1
Crosby, M.A.2
Mungall, C.J.3
Matthews, B.B.4
Campbell, K.S.5
-
56
-
-
0015765702
-
A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population
-
Ohta, T., and M. Kimura, 1973 A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population. Genet. Res. 22: 201-204.
-
(1973)
Genet. Res
, vol.22
, pp. 201-204
-
-
Ohta, T.1
Kimura, M.2
-
57
-
-
17444402039
-
Insertion/deletion and nucleotide polymorphism reveal constraints in Drosophila melanogaster introns and intergenic regions
-
Ometto, L., W. Stephan, and D. De Lorenzo, 2005 Insertion/deletion and nucleotide polymorphism reveal constraints in Drosophila melanogaster introns and intergenic regions. Genetics 169: 1521-1527.
-
(2005)
Genetics
, vol.169
, pp. 1521-1527
-
-
Ometto, L.1
Stephan, W.2
de Lorenzo, D.3
-
58
-
-
0026703046
-
Variation across species in the size of the nuclear genome supports the junk-DNA explanation for the C-value paradox
-
Pagel, M., and R. A. Johnstone, 1992 Variation across species in the size of the nuclear genome supports the junk-DNA explanation for the C-value paradox. Proc. Biol. Sci. 249: 119-124.
-
(1992)
Proc. Biol. Sci
, vol.249
, pp. 119-124
-
-
Pagel, M.1
Johnstone, R.A.2
-
59
-
-
0347361692
-
Selective constraints on intron evolution in Drosophila
-
Parsch, J., 2003 Selective constraints on intron evolution in Drosophila. Genetics 165: 1843-1851.
-
(2003)
Genetics
, vol.165
, pp. 1843-1851
-
-
Parsch, J.1
-
60
-
-
0031891484
-
High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups
-
Petrov, D. A., and D. L. Hartl, 1998 High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups. Mol. Biol. Evol. 15: 1562-1567.
-
(1998)
Mol. Biol. Evol
, vol.15
, pp. 1562-1567
-
-
Petrov, D.A.1
Hartl, D.L.2
-
61
-
-
0029856377
-
High rate of DNA loss in Drosophila
-
Petrov, D. A., E. R. Lozovskaya, and D. L. Hartl, 1996 High rate of DNA loss in Drosophila. Nature 384: 346-349.
-
(1996)
Nature
, vol.384
, pp. 346-349
-
-
Petrov, D.A.1
Lozovskaya, E.R.2
Hartl, D.L.3
-
62
-
-
78650304100
-
Synonymous but not the same: The causes and consequencs of codon bias
-
Plotkin, J. B., and G. Kudla, 2011 Synonymous but not the same: the causes and consequencs of codon bias. Nat. Rev. Genet. 12: 33-42.
-
(2011)
Nat. Rev. Genet
, vol.12
, pp. 33-42
-
-
Plotkin, J.B.1
Kudla, G.2
-
63
-
-
33749583346
-
Intron length evolution in Drosophila
-
Presgraves, D., 2006 Intron length evolution in Drosophila. Mol. Biol. Evol. 23: 2203-2213.
-
(2006)
Mol. Biol. Evol
, vol.23
, pp. 2203-2213
-
-
Presgraves, D.1
-
64
-
-
18544374144
-
Numerical Recipes in Fortran: The Art of Scientific Computing
-
Cambridge, UK
-
Press, W. H., S. A. Teukolsky, W. T. Vetterling, and B. P. Flannery, 1992 Numerical Recipes in Fortran: The Art of Scientific Computing. Cambridge University Press, Cambridge, UK.
-
(1992)
Cambridge University Press
-
-
Press, W.H.1
Teukolsky, S.A.2
Vetterling, W.T.3
Flannery, B.P.4
-
65
-
-
0036862056
-
How intron splicing affects the deletion and insertion profile in Drosophila melanogaster
-
Ptak, S. E., and D. A. Petrov, 2002 How intron splicing affects the deletion and insertion profile in Drosophila melanogaster. Genetics 162: 1233-1244.
-
(2002)
Genetics
, vol.162
, pp. 1233-1244
-
-
Ptak, S.E.1
Petrov, D.A.2
-
66
-
-
84859219968
-
Balanced codon usage optimizes translational efficiency
-
Qian, W., J.-R. Yang, N. M. Pearson, C. Maclean, and J. Zhang, 2012 Balanced codon usage optimizes translational efficiency. PLoS Genet. 8: e1002603.
-
(2012)
PLoS Genet
, vol.e1002603
, pp. 8
-
-
Qian, W.1
Yang, J.-R.2
Pearson, N.M.3
Maclean, C.4
Zhang, J.5
-
67
-
-
84855751842
-
Reduced efficacy of natural selection on codon usage bias in selfing Arabidopsis and Capsella species
-
Qiu, S., K. Zeng, T. Slotte, S. I. Wright, and D. Charlesworth, 2011 Reduced efficacy of natural selection on codon usage bias in selfing Arabidopsis and Capsella species. Genome Biol. Evol. 3: 868-880.
-
(2011)
Genome Biol. Evol
, vol.3
, pp. 868-880
-
-
Qiu, S.1
Zeng, K.2
Slotte, T.3
Wright, S.I.4
Charlesworth, D.5
-
68
-
-
0036999964
-
Molecular population genetics of sequence length diversity in the Adh region of Drosophila pseudoobscura
-
Schaeffer, S. W., 2002 Molecular population genetics of sequence length diversity in the Adh region of Drosophila pseudoobscura. Genet. Res. 80: 163-175.
-
(2002)
Genet. Res
, vol.80
, pp. 163-175
-
-
Schaeffer, S.W.1
-
69
-
-
14544277543
-
Variation in the strength of selected codon usage bias among bacteria
-
Sharp, P. M., E. Bailes, R. J. Grocock, J. F. Peden, and R. E. Sockett, 2005 Variation in the strength of selected codon usage bias among bacteria. Nucleic Acids Res. 33: 1141-1153.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1141-1153
-
-
Sharp, P.M.1
Bailes, E.2
Grocock, R.J.3
Peden, J.F.4
Sockett, R.E.5
-
70
-
-
77951570815
-
Forces that influence the evolution of codon bias
-
Sharp, P. M., L. R. Emery, and K. Zeng, 2010 Forces that influence the evolution of codon bias. Phil. Trans. R. Soc. B. 365: 1203-1212.
-
(2010)
Phil. Trans. R. Soc. B
, vol.365
, pp. 1203-1212
-
-
Sharp, P.M.1
Emery, L.R.2
Zeng, K.3
-
71
-
-
0028816747
-
A measure of population subdivision based on microsatellite allele frequencies
-
Slatkin, M., 1995 A measure of population subdivision based on microsatellite allele frequencies. Genetics 139: 457-462.
-
(1995)
Genetics
, vol.139
, pp. 457-462
-
-
Slatkin, M.1
-
72
-
-
84868599895
-
Drift-barrier hypothesis and mutation-rate evolution
-
Sung, W., M. S. Ackerman, S. F. Miller, T. G. Doag, and M. Lynch, 2012 Drift-barrier hypothesis and mutation-rate evolution. Proc. Natl. Acad. Sci. USA 109: 18488-18492.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 18488-18492
-
-
Sung, W.1
Ackerman, M.S.2
Miller, S.F.3
Doag, T.G.4
Lynch, M.5
-
73
-
-
0021419667
-
Heritable variation via mutation-selection balance: Lerch's zeta meets the abdominal bristle
-
Turelli, M., 1984 Heritable variation via mutation-selection balance: Lerch's zeta meets the abdominal bristle. Theor. Popul. Biol. 25: 138-193.
-
(1984)
Theor. Popul. Biol
, vol.25
, pp. 138-193
-
-
Turelli, M.1
-
74
-
-
79952760686
-
Both size and GC-content of mimimal introns are selected in human populations
-
Wang, D. P., and J. Yu, 2011 Both size and GC-content of mimimal introns are selected in human populations. PLoS ONE 6: e17945.
-
(2011)
PLoS ONE
, vol.e17945
, pp. 6
-
-
Wang, D.P.1
Yu, J.2
-
75
-
-
0042318455
-
The anomalous effects of biased mutation
-
Waxman, D., and J. R. Peck, 2003 The anomalous effects of biased mutation. Genetics 164: 1615-1626.
-
(2003)
Genetics
, vol.164
, pp. 1615-1626
-
-
Waxman, D.1
Peck, J.R.2
-
76
-
-
77956984331
-
A first study of natural selection in Clausilia laminata (Montagu)
-
Weldon, W. F. R., 1901 A first study of natural selection in Clausilia laminata (Montagu). Biometrika 1: 109-124.
-
(1901)
Biometrika
, vol.1
, pp. 109-124
-
-
Weldon, W.F.R.1
-
77
-
-
0001771498
-
Evolution in Mendelian populations
-
Wright, S., 1931 Evolution in Mendelian populations. Genetics 16: 97-159.
-
(1931)
Genetics
, vol.16
, pp. 97-159
-
-
Wright, S.1
-
78
-
-
77951515648
-
Evolution in populations in approximate equilibrium
-
Wright, S., 1935 Evolution in populations in approximate equilibrium. J. Genet. 30: 257-266.
-
(1935)
J. Genet
, vol.30
, pp. 257-266
-
-
Wright, S.1
-
79
-
-
77952826597
-
A simple multiallele model and its application to identifying preferred-unpreferred codons using polymorphism data
-
Zeng, K., 2010 A simple multiallele model and its application to identifying preferred-unpreferred codons using polymorphism data. Mol. Biol. Evol. 27: 1327-1337.
-
(2010)
Mol. Biol. Evol
, vol.27
, pp. 1327-1337
-
-
Zeng, K.1
-
80
-
-
70649090279
-
Estimating selection intensity on synonymous codon usage in a non-equilibrium population
-
Zeng, K., and B. Charlesworth, 2009 Estimating selection intensity on synonymous codon usage in a non-equilibrium population. Genetics 183: 651-662.
-
(2009)
Genetics
, vol.183
, pp. 651-662
-
-
Zeng, K.1
Charlesworth, B.2
-
81
-
-
49849093174
-
The anomalous effects of biased mutation: Mean-optimum deviation and apparent directional selection under stabilizing selection
-
Zhang, X.-S., and W. G. Hill, 2008 The anomalous effects of biased mutation: mean-optimum deviation and apparent directional selection under stabilizing selection. Genetics 179: 1135-1141.
-
(2008)
Genetics
, vol.179
, pp. 1135-1141
-
-
Zhang, X.-S.1
Hill, W.G.2
-
82
-
-
84881054839
-
Evolutionary relationship of DNA equences in a finite population
-
Tajima, F., 1983. Evolutionary relationship of DNA equences in a finite population. Genetics 23 28-64.
-
Genetics
, vol.23
, pp. 28-64
-
-
Tajima, F.1
|