-
1
-
-
0033178886
-
Intron-exon structures of eukaryotic model organisms
-
Deutsch M, Long M, (1999) Intron-exon structures of eukaryotic model organisms. Nucleic Acids Res 27: 3219-3228.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 3219-3228
-
-
Deutsch, M.1
Long, M.2
-
2
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, et al. (2001) Initial sequencing and analysis of the human genome. Nature 409: 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
-
3
-
-
7244245762
-
Finishing the euchromatic sequence of the human genome
-
The International Human Genome Sequencing Consortium
-
The International Human Genome Sequencing Consortium (2004) Finishing the euchromatic sequence of the human genome. Nature 431: 931-945.
-
(2004)
Nature
, vol.431
, pp. 931-945
-
-
-
4
-
-
55249093247
-
Structure and function of the Pre-mRNA splicing machine
-
Sperling J, Azubel M, Sperling R, (2008) Structure and function of the Pre-mRNA splicing machine. Structure 16: 1605-1615.
-
(2008)
Structure
, vol.16
, pp. 1605-1615
-
-
Sperling, J.1
Azubel, M.2
Sperling, R.3
-
5
-
-
0037062440
-
Intron presence-absence polymorphism in Drosophila driven by positive Darwinian selection
-
Llopart A, Comeron JM, Brunet FG, Lachaise D, Long M, (2002) Intron presence-absence polymorphism in Drosophila driven by positive Darwinian selection. Proc Natl Acad Sci U S A 99: 8121-8126.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 8121-8126
-
-
Llopart, A.1
Comeron, J.M.2
Brunet, F.G.3
Lachaise, D.4
Long, M.5
-
6
-
-
49749083390
-
Positive and negative selection on noncoding DNA in Drosophila simulans
-
Haddrill PR, Bachtrog D, Andolfatto P, (2008) Positive and negative selection on noncoding DNA in Drosophila simulans. Mol Biol Evol 25: 1825-1834.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1825-1834
-
-
Haddrill, P.R.1
Bachtrog, D.2
Andolfatto, P.3
-
7
-
-
33846331570
-
Relationship between mRNA stability and intron presence
-
Wang HF, Feng L, Niu DK, (2007) Relationship between mRNA stability and intron presence. Biochem Biophys Res Commun 354: 203-208.
-
(2007)
Biochem Biophys Res Commun
, vol.354
, pp. 203-208
-
-
Wang, H.F.1
Feng, L.2
Niu, D.K.3
-
8
-
-
34347389905
-
Three distinct modes of intron dynamics in the evolution of eukaryotes
-
Carmel L, Wolf YI, Rogozin IB, Koonin EV, (2007) Three distinct modes of intron dynamics in the evolution of eukaryotes. Genome Res 17: 1034-1044.
-
(2007)
Genome Res
, vol.17
, pp. 1034-1044
-
-
Carmel, L.1
Wolf, Y.I.2
Rogozin, I.B.3
Koonin, E.V.4
-
9
-
-
33644603687
-
The rise and falls of introns
-
Belshaw R, Bensasson D, (2006) The rise and falls of introns. Heredity 96: 208-213.
-
(2006)
Heredity
, vol.96
, pp. 208-213
-
-
Belshaw, R.1
Bensasson, D.2
-
10
-
-
0142092553
-
Mystery of intron gain
-
Fedorov A, Roy S, Fedorova L, Gilbert W, (2003) Mystery of intron gain. Genome Res 13: 2236-2241.
-
(2003)
Genome Res
, vol.13
, pp. 2236-2241
-
-
Fedorov, A.1
Roy, S.2
Fedorova, L.3
Gilbert, W.4
-
12
-
-
59349107038
-
Mystery of intron gain: new data and new models
-
Roy SW, Irimia M, (2009) Mystery of intron gain: new data and new models. Trends Genet 25: 67-73.
-
(2009)
Trends Genet
, vol.25
, pp. 67-73
-
-
Roy, S.W.1
Irimia, M.2
-
13
-
-
0037224552
-
Minimal introns are not "junk"
-
Yu J, Yang Z, Kibukawa M, Paddock M, Passey DA, et al. (2002) Minimal introns are not "junk". Genome Res 12: 1185-1189.
-
(2002)
Genome Res
, vol.12
, pp. 1185-1189
-
-
Yu, J.1
Yang, Z.2
Kibukawa, M.3
Paddock, M.4
Passey, D.A.5
-
14
-
-
77956336624
-
A novel role for minimal introns: routing mRNAs to the cytosol
-
Zhu J, He F, Wang D, Liu K, Huang D, et al. (2010) A novel role for minimal introns: routing mRNAs to the cytosol. PLoS One 5: e10144.
-
(2010)
PLoS One
, vol.5
-
-
Zhu, J.1
He, F.2
Wang, D.3
Liu, K.4
Huang, D.5
-
15
-
-
0033767383
-
The correlation between intron length and recombination in drosophila. Dynamic equilibrium between mutational and selective forces
-
Comeron JM, Kreitman M, (2000) The correlation between intron length and recombination in drosophila. Dynamic equilibrium between mutational and selective forces. Genetics 156: 1175-1190.
-
(2000)
Genetics
, vol.156
, pp. 1175-1190
-
-
Comeron, J.M.1
Kreitman, M.2
-
16
-
-
0347361692
-
Selective constraints on intron evolution in Drosophila
-
Parsch J, (2003) Selective constraints on intron evolution in Drosophila. Genetics 165: 1843-1851.
-
(2003)
Genetics
, vol.165
, pp. 1843-1851
-
-
Parsch, J.1
-
17
-
-
1542614593
-
Deletion bias in avian introns over evolutionary timescales
-
Johnson KP, (2004) Deletion bias in avian introns over evolutionary timescales. Mol Biol Evol 21: 599-602.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 599-602
-
-
Johnson, K.P.1
-
18
-
-
17444402039
-
Insertion/deletion and nucleotide polymorphism data reveal constraints in Drosophila melanogaster introns and intergenic regions
-
Ometto L, Stephan W, De Lorenzo D, (2005) Insertion/deletion and nucleotide polymorphism data reveal constraints in Drosophila melanogaster introns and intergenic regions. Genetics 169: 1521-1527.
-
(2005)
Genetics
, vol.169
, pp. 1521-1527
-
-
Ometto, L.1
Stephan, W.2
de Lorenzo, D.3
-
19
-
-
77952800173
-
On the utility of short intron sequences as a reference for the detection of positive and negative selection in Drosophila
-
Parsch J, Novozhilov S, Saminadin-Peter SS, Wong KM, Andolfatto P, (2010) On the utility of short intron sequences as a reference for the detection of positive and negative selection in Drosophila. Mol Biol Evol 27: 1226-1234.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 1226-1234
-
-
Parsch, J.1
Novozhilov, S.2
Saminadin-Peter, S.S.3
Wong, K.M.4
Andolfatto, P.5
-
20
-
-
25844481290
-
Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content
-
Haddrill PR, Charlesworth B, Halligan DL, Andolfatto P, (2005) Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content. Genome Biol 6: R67.
-
(2005)
Genome Biol
, vol.6
-
-
Haddrill, P.R.1
Charlesworth, B.2
Halligan, D.L.3
Andolfatto, P.4
-
21
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
Durbin RM, Abecasis GR, Altshuler DL, Auton A, Brooks LD, et al. (2010) A map of human genome variation from population-scale sequencing. Nature 467: 1061-1073.
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
Durbin, R.M.1
Abecasis, G.R.2
Altshuler, D.L.3
Auton, A.4
Brooks, L.D.5
-
22
-
-
79959524146
-
A haplotype map of the human genome
-
The International HapMap Consortium
-
The International HapMap Consortium (2005) A haplotype map of the human genome. Nature 437: 1299-1320.
-
(2005)
Nature
, vol.437
, pp. 1299-1320
-
-
-
23
-
-
0345070506
-
Mutational equilibrium model of genome size evolution
-
Petrov DA, (2002) Mutational equilibrium model of genome size evolution. Theor Popul Biol 61: 531-544.
-
(2002)
Theor Popul Biol
, vol.61
, pp. 531-544
-
-
Petrov, D.A.1
-
24
-
-
77649331986
-
Insertion and deletion processes in recent human history
-
Sjodin P, Bataillon T, Schierup MH, (2010) Insertion and deletion processes in recent human history. PLoS One 5: e8650.
-
(2010)
PLoS One
, vol.5
-
-
Sjodin, P.1
Bataillon, T.2
Schierup, M.H.3
-
25
-
-
77955136814
-
Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes
-
Romiguier J, Ranwez V, Douzery EJ, Galtier N, (2010) Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes. Genome Res 20: 1001-1009.
-
(2010)
Genome Res
, vol.20
, pp. 1001-1009
-
-
Romiguier, J.1
Ranwez, V.2
Douzery, E.J.3
Galtier, N.4
-
26
-
-
0042525769
-
A population threshold for functional polymorphisms
-
Wong GK, Yang Z, Passey DA, Kibukawa M, Paddock M, et al. (2003) A population threshold for functional polymorphisms. Genome Res 13: 1873-1879.
-
(2003)
Genome Res
, vol.13
, pp. 1873-1879
-
-
Wong, G.K.1
Yang, Z.2
Passey, D.A.3
Kibukawa, M.4
Paddock, M.5
-
27
-
-
33749583346
-
Intron length evolution in Drosophila
-
Presgraves DC, (2006) Intron length evolution in Drosophila. Mol Biol Evol 23: 2203-2213.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 2203-2213
-
-
Presgraves, D.C.1
-
28
-
-
79957932376
-
Dindel: Accurate indel calls from short-read data
-
Albers CA, Lunter G, Macarthur DG, McVean G, Ouwehand WH, et al. (2010) Dindel: Accurate indel calls from short-read data. Genome Res.
-
(2010)
Genome Res
-
-
Albers, C.A.1
Lunter, G.2
Macarthur, D.G.3
McVean, G.4
Ouwehand, W.H.5
-
29
-
-
75549089967
-
The UCSC Genome Browser database: update 2010
-
Rhead B, Karolchik D, Kuhn RM, Hinrichs AS, Zweig AS, et al. (2009) The UCSC Genome Browser database: update 2010. Nucleic Acids Res 38: D613-619.
-
(2009)
Nucleic Acids Res
, vol.38
-
-
Rhead, B.1
Karolchik, D.2
Kuhn, R.M.3
Hinrichs, A.S.4
Zweig, A.S.5
-
30
-
-
67650067467
-
Gamma-MYN: a new algorithm for estimating Ka and Ks with consideration of variable substitution rates
-
Wang DP, Wan HL, Zhang S, Yu J, (2009) Gamma-MYN: a new algorithm for estimating Ka and Ks with consideration of variable substitution rates. Biol Direct 4: 20.
-
(2009)
Biol Direct
, vol.4
, pp. 20
-
-
Wang, D.P.1
Wan, H.L.2
Zhang, S.3
Yu, J.4
-
31
-
-
77951682635
-
KaKs_Calculator 2.0: a toolkit incorporating gamma-series methods and sliding window strategies
-
Wang D, Zhang Y, Zhang Z, Zhu J, Yu J, (2010) KaKs_Calculator 2.0: a toolkit incorporating gamma-series methods and sliding window strategies. Genomics Proteomics Bioinformatics 8: 77-80.
-
(2010)
Genomics Proteomics Bioinformatics
, vol.8
, pp. 77-80
-
-
Wang, D.1
Zhang, Y.2
Zhang, Z.3
Zhu, J.4
Yu, J.5
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