메뉴 건너뛰기




Volumn 6, Issue 3, 2011, Pages

Both size and GC-content of minimal introns are selected in human populations

Author keywords

[No Author keywords available]

Indexed keywords

AFRICA; ARTICLE; ASIAN; CONTROLLED STUDY; DNA BASE COMPOSITION; EUROPE; GENE DELETION; GENE INSERTION; GENE MUTATION; HUMAN; INTRON; MOLECULAR EVOLUTION; MOLECULAR SIZE; POPULATION GENETICS; SEQUENCE ANALYSIS; VALIDATION STUDY; BASE PAIRING; GENETIC SELECTION; GENETICS; INDEL MUTATION; NUCLEOTIDE SEQUENCE;

EID: 79952760686     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0017945     Document Type: Article
Times cited : (17)

References (31)
  • 1
    • 0033178886 scopus 로고    scopus 로고
    • Intron-exon structures of eukaryotic model organisms
    • Deutsch M, Long M, (1999) Intron-exon structures of eukaryotic model organisms. Nucleic Acids Res 27: 3219-3228.
    • (1999) Nucleic Acids Res , vol.27 , pp. 3219-3228
    • Deutsch, M.1    Long, M.2
  • 3
    • 7244245762 scopus 로고    scopus 로고
    • Finishing the euchromatic sequence of the human genome
    • The International Human Genome Sequencing Consortium
    • The International Human Genome Sequencing Consortium (2004) Finishing the euchromatic sequence of the human genome. Nature 431: 931-945.
    • (2004) Nature , vol.431 , pp. 931-945
  • 4
    • 55249093247 scopus 로고    scopus 로고
    • Structure and function of the Pre-mRNA splicing machine
    • Sperling J, Azubel M, Sperling R, (2008) Structure and function of the Pre-mRNA splicing machine. Structure 16: 1605-1615.
    • (2008) Structure , vol.16 , pp. 1605-1615
    • Sperling, J.1    Azubel, M.2    Sperling, R.3
  • 5
    • 0037062440 scopus 로고    scopus 로고
    • Intron presence-absence polymorphism in Drosophila driven by positive Darwinian selection
    • Llopart A, Comeron JM, Brunet FG, Lachaise D, Long M, (2002) Intron presence-absence polymorphism in Drosophila driven by positive Darwinian selection. Proc Natl Acad Sci U S A 99: 8121-8126.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 8121-8126
    • Llopart, A.1    Comeron, J.M.2    Brunet, F.G.3    Lachaise, D.4    Long, M.5
  • 6
    • 49749083390 scopus 로고    scopus 로고
    • Positive and negative selection on noncoding DNA in Drosophila simulans
    • Haddrill PR, Bachtrog D, Andolfatto P, (2008) Positive and negative selection on noncoding DNA in Drosophila simulans. Mol Biol Evol 25: 1825-1834.
    • (2008) Mol Biol Evol , vol.25 , pp. 1825-1834
    • Haddrill, P.R.1    Bachtrog, D.2    Andolfatto, P.3
  • 7
    • 33846331570 scopus 로고    scopus 로고
    • Relationship between mRNA stability and intron presence
    • Wang HF, Feng L, Niu DK, (2007) Relationship between mRNA stability and intron presence. Biochem Biophys Res Commun 354: 203-208.
    • (2007) Biochem Biophys Res Commun , vol.354 , pp. 203-208
    • Wang, H.F.1    Feng, L.2    Niu, D.K.3
  • 8
    • 34347389905 scopus 로고    scopus 로고
    • Three distinct modes of intron dynamics in the evolution of eukaryotes
    • Carmel L, Wolf YI, Rogozin IB, Koonin EV, (2007) Three distinct modes of intron dynamics in the evolution of eukaryotes. Genome Res 17: 1034-1044.
    • (2007) Genome Res , vol.17 , pp. 1034-1044
    • Carmel, L.1    Wolf, Y.I.2    Rogozin, I.B.3    Koonin, E.V.4
  • 9
    • 33644603687 scopus 로고    scopus 로고
    • The rise and falls of introns
    • Belshaw R, Bensasson D, (2006) The rise and falls of introns. Heredity 96: 208-213.
    • (2006) Heredity , vol.96 , pp. 208-213
    • Belshaw, R.1    Bensasson, D.2
  • 12
    • 59349107038 scopus 로고    scopus 로고
    • Mystery of intron gain: new data and new models
    • Roy SW, Irimia M, (2009) Mystery of intron gain: new data and new models. Trends Genet 25: 67-73.
    • (2009) Trends Genet , vol.25 , pp. 67-73
    • Roy, S.W.1    Irimia, M.2
  • 14
    • 77956336624 scopus 로고    scopus 로고
    • A novel role for minimal introns: routing mRNAs to the cytosol
    • Zhu J, He F, Wang D, Liu K, Huang D, et al. (2010) A novel role for minimal introns: routing mRNAs to the cytosol. PLoS One 5: e10144.
    • (2010) PLoS One , vol.5
    • Zhu, J.1    He, F.2    Wang, D.3    Liu, K.4    Huang, D.5
  • 15
    • 0033767383 scopus 로고    scopus 로고
    • The correlation between intron length and recombination in drosophila. Dynamic equilibrium between mutational and selective forces
    • Comeron JM, Kreitman M, (2000) The correlation between intron length and recombination in drosophila. Dynamic equilibrium between mutational and selective forces. Genetics 156: 1175-1190.
    • (2000) Genetics , vol.156 , pp. 1175-1190
    • Comeron, J.M.1    Kreitman, M.2
  • 16
    • 0347361692 scopus 로고    scopus 로고
    • Selective constraints on intron evolution in Drosophila
    • Parsch J, (2003) Selective constraints on intron evolution in Drosophila. Genetics 165: 1843-1851.
    • (2003) Genetics , vol.165 , pp. 1843-1851
    • Parsch, J.1
  • 17
    • 1542614593 scopus 로고    scopus 로고
    • Deletion bias in avian introns over evolutionary timescales
    • Johnson KP, (2004) Deletion bias in avian introns over evolutionary timescales. Mol Biol Evol 21: 599-602.
    • (2004) Mol Biol Evol , vol.21 , pp. 599-602
    • Johnson, K.P.1
  • 18
    • 17444402039 scopus 로고    scopus 로고
    • Insertion/deletion and nucleotide polymorphism data reveal constraints in Drosophila melanogaster introns and intergenic regions
    • Ometto L, Stephan W, De Lorenzo D, (2005) Insertion/deletion and nucleotide polymorphism data reveal constraints in Drosophila melanogaster introns and intergenic regions. Genetics 169: 1521-1527.
    • (2005) Genetics , vol.169 , pp. 1521-1527
    • Ometto, L.1    Stephan, W.2    de Lorenzo, D.3
  • 19
    • 77952800173 scopus 로고    scopus 로고
    • On the utility of short intron sequences as a reference for the detection of positive and negative selection in Drosophila
    • Parsch J, Novozhilov S, Saminadin-Peter SS, Wong KM, Andolfatto P, (2010) On the utility of short intron sequences as a reference for the detection of positive and negative selection in Drosophila. Mol Biol Evol 27: 1226-1234.
    • (2010) Mol Biol Evol , vol.27 , pp. 1226-1234
    • Parsch, J.1    Novozhilov, S.2    Saminadin-Peter, S.S.3    Wong, K.M.4    Andolfatto, P.5
  • 20
    • 25844481290 scopus 로고    scopus 로고
    • Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content
    • Haddrill PR, Charlesworth B, Halligan DL, Andolfatto P, (2005) Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content. Genome Biol 6: R67.
    • (2005) Genome Biol , vol.6
    • Haddrill, P.R.1    Charlesworth, B.2    Halligan, D.L.3    Andolfatto, P.4
  • 21
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • Durbin RM, Abecasis GR, Altshuler DL, Auton A, Brooks LD, et al. (2010) A map of human genome variation from population-scale sequencing. Nature 467: 1061-1073.
    • (2010) Nature , vol.467 , pp. 1061-1073
    • Durbin, R.M.1    Abecasis, G.R.2    Altshuler, D.L.3    Auton, A.4    Brooks, L.D.5
  • 22
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • The International HapMap Consortium
    • The International HapMap Consortium (2005) A haplotype map of the human genome. Nature 437: 1299-1320.
    • (2005) Nature , vol.437 , pp. 1299-1320
  • 23
    • 0345070506 scopus 로고    scopus 로고
    • Mutational equilibrium model of genome size evolution
    • Petrov DA, (2002) Mutational equilibrium model of genome size evolution. Theor Popul Biol 61: 531-544.
    • (2002) Theor Popul Biol , vol.61 , pp. 531-544
    • Petrov, D.A.1
  • 24
    • 77649331986 scopus 로고    scopus 로고
    • Insertion and deletion processes in recent human history
    • Sjodin P, Bataillon T, Schierup MH, (2010) Insertion and deletion processes in recent human history. PLoS One 5: e8650.
    • (2010) PLoS One , vol.5
    • Sjodin, P.1    Bataillon, T.2    Schierup, M.H.3
  • 25
    • 77955136814 scopus 로고    scopus 로고
    • Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes
    • Romiguier J, Ranwez V, Douzery EJ, Galtier N, (2010) Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes. Genome Res 20: 1001-1009.
    • (2010) Genome Res , vol.20 , pp. 1001-1009
    • Romiguier, J.1    Ranwez, V.2    Douzery, E.J.3    Galtier, N.4
  • 27
    • 33749583346 scopus 로고    scopus 로고
    • Intron length evolution in Drosophila
    • Presgraves DC, (2006) Intron length evolution in Drosophila. Mol Biol Evol 23: 2203-2213.
    • (2006) Mol Biol Evol , vol.23 , pp. 2203-2213
    • Presgraves, D.C.1
  • 30
    • 67650067467 scopus 로고    scopus 로고
    • Gamma-MYN: a new algorithm for estimating Ka and Ks with consideration of variable substitution rates
    • Wang DP, Wan HL, Zhang S, Yu J, (2009) Gamma-MYN: a new algorithm for estimating Ka and Ks with consideration of variable substitution rates. Biol Direct 4: 20.
    • (2009) Biol Direct , vol.4 , pp. 20
    • Wang, D.P.1    Wan, H.L.2    Zhang, S.3    Yu, J.4
  • 31
    • 77951682635 scopus 로고    scopus 로고
    • KaKs_Calculator 2.0: a toolkit incorporating gamma-series methods and sliding window strategies
    • Wang D, Zhang Y, Zhang Z, Zhu J, Yu J, (2010) KaKs_Calculator 2.0: a toolkit incorporating gamma-series methods and sliding window strategies. Genomics Proteomics Bioinformatics 8: 77-80.
    • (2010) Genomics Proteomics Bioinformatics , vol.8 , pp. 77-80
    • Wang, D.1    Zhang, Y.2    Zhang, Z.3    Zhu, J.4    Yu, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.