Characterization of Chromosome Stability in Diploid, Polyploid and Hybrid Yeast Cells

PLoS ONE

Volumn 8, Issue 7, 2013, Pages

  Kumaran, Rajaraman ^a,b   Yang, Shi Yow ^b   Leu, Jun Yi ^a,b  

^a NATIONAL DEFENSE MEDICAL CENTER   (Taiwan)

^b INSTITUTE OF MOLECULAR BIOLOGY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ARTIFICIAL CHROMOSOME; CENTROMERE; CHROMOSOMAL INSTABILITY; CHROMOSOME 3; CHROMOSOME LOSS; CONTROLLED STUDY; CORRELATION ANALYSIS; DIPLOIDY; FUNGAL GENE; GENE SEQUENCE; HYBRID; M PHASE CELL CYCLE CHECKPOINT; NONHUMAN; POLYPLOIDY; SACCHAROMYCES BAYANUS; SACCHAROMYCES CEREVISIAE; SEX CHROMOSOME; YEAST CELL;

CHIMERA; CHROMOSOMAL INSTABILITY; CHROMOSOMES, FUNGAL; DIPLOIDY; GENES, FUNGAL; GENETIC MARKERS; LOSS OF HETEROZYGOSITY; MONOSOMY; POLYPLOIDY; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SACCHAROMYCETALES;

SACCHAROMYCES CEREVISIAE; SACCHAROMYCETALES;

EID: 84879997352     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0068094     Document Type: Article

References (76)

1. Hartwell LW, Dutcher SK, Wood JG, Garvik B, (1982) The fidelity of mitotic chromosome reproduction in S. cerevisiae. Rec Adv Yeast Mol Biol 1: 28-38.
2. Li R, Murray AW, (1991) Feedback control of mitosis in budding yeast. Cell 66: 519-531.
3. Bharadwaj R, Yu H, (2004) The spindle checkpoint, aneuploidy, and cancer. Oncogene 23: 2016-2027.
4. Silva P, Barbosa J, Nascimento AV, Faria J, Reis R, et al. (2011) Monitoring the fidelity of mitotic chromosome segregation by the spindle assembly checkpoint. Cell Prolif 44: 391-400.
5. Herrera LA, Prada D, Andonegui MA, Duenas-Gonzalez A, (2008) The epigenetic origin of aneuploidy. Curr Genomics 9: 43-50.
6. Lavania UC, (1987) Chromosomal Instability in Lemon Grass, Cymbopogon-Flexuosus (Steudel) Wats. Genetica 72: 211-215.
7. Rodriguez-Arnaiz R, Sortibran AC, Tellez GO, (2004) Detection of mitotic recombination and sex chromosome loss induced by adriamycin, chlorambucil, demecolcine, paclitaxel and vinblastine in somatic cells of Drosophila melanogaster in vivo. Mutagenesis 19: 121-127.
8. Fang X, Zhang P, (2011) Aneuploidy and tumorigenesis. Semin Cell Dev Biol 22: 595-601.
9. Torres EM, Williams BR, Amon A, (2008) Aneuploidy: cells losing their balance. Genetics 179: 737-746.
10. Niwa O, Tange Y, Kurabayashi A, (2006) Growth arrest and chromosome instability in aneuploid yeast. Yeast 23: 937-950.
11. Kohli J, Hottinger H, Munz P, Strauss A, Thuriaux P, (1977) Genetic Mapping in SCHIZOSACCHAROMYCES POMBE by Mitotic and Meiotic Analysis and Induced Haploidization. Genetics 87: 471-489.
12. Henry IM, Dilkes BP, Young K, Watson B, Wu H, et al. (2005) Aneuploidy and genetic variation in the Arabidopsis thaliana triploid response. Genetics 170: 1979-1988.
13. Reshmi SC, Gollin SM, (2005) Chromosomal instability in oral cancer cells. J Dent Res 84: 107-117.
14. Mayer VW, Goin CJ, (1989) Observations on chromosome loss detection by multiple recessive marker expression in strain D61.M of Saccharomyces cerevisiae. Mutat Res 224: 471-478.
15. Whittaker SG, Zimmermann FK, Dicus B, Piegorsch WW, Resnick MA, et al. (1990) Detection of induced mitotic chromosome loss in Saccharomyces cerevisiae-an interlaboratory assessment of 12 chemicals. Mutat Res 241: 225-242.
16. Zimmermann FK, Mayer VW, Scheel I, (1984) Induction of aneuploidy by oncodazole (nocodazole), an anti-tubulin agent, and acetone. Mutat Res 141: 15-18.
17. Zimmermann FK, Scheel I, (1984) Genetic effects of 5-azacytidine in Saccharomyces cerevisiae. Mutat Res 139: 21-24.
18. Mayer VW, Aguilera A, (1990) High levels of chromosome instability in polyploids of Saccharomyces cerevisiae. Mutat Res 231: 177-186.
19. Hiraoka M, Watanabe K, Umezu K, Maki H, (2000) Spontaneous loss of heterozygosity in diploid Saccharomyces cerevisiae cells. Genetics 156: 1531-1548.
20. Resnick MA, Mayer VW, Zimmermann FK, (1986) The detection of chemically induced aneuploidy in Saccharomyces cerevisiae: an assessment of mitotic and meiotic systems. Mutat Res 167: 47-60.
21. Dershowitz A, Newlon CS, (1993) The effect on chromosome stability of deleting replication origins. Mol Cell Biol 13: 391-398.
22. Futcher B, Carbon J, (1986) Toxic effects of excess cloned centromeres. Mol Cell Biol 6: 2213-2222.
23. Hegemann JH, Shero JH, Cottarel G, Philippsen P, Hieter P, (1988) Mutational analysis of centromere DNA from chromosome VI of Saccharomyces cerevisiae. Mol Cell Biol 8: 2523-2535.
24. Lundblad V, Szostak JW, (1989) A mutant with a defect in telomere elongation leads to senescence in yeast. Cell 57: 633-643.
25. Velicescu M, Yu J, Herbert BS, Shay JW, Granada E, et al. (2003) Aneuploidy and telomere attrition are independent determinants of crisis in SV40-transformed epithelial cells. Cancer Res 63: 5813-5820.
26. Counter CM, Avilion AA, LeFeuvre CE, Stewart NG, Greider CW, et al. (1992) Telomere shortening associated with chromosome instability is arrested in immortal cells which express telomerase activity. Embo J 11: 1921-1929.
27. Hieter P, Mann C, Snyder M, Davis RW, (1985) Mitotic stability of yeast chromosomes: a colony color assay that measures nondisjunction and chromosome loss. Cell 40: 381-392.
28. Murray AW, Schultes NP, Szostak JW, (1986) Chromosome length controls mitotic chromosome segregation in yeast. Cell 45: 529-536.
29. Spence JM, Mills W, Mann K, Huxley C, Farr CJ, (2006) Increased missegregation and chromosome loss with decreasing chromosome size in vertebrate cells. Chromosoma 115: 60-74.
30. Biggins S, Murray AW, (1998) Sister chromatid cohesion in mitosis. Curr Opin Cell Biol 10: 769-775.
31. Watanabe Y, (2005) Sister chromatid cohesion along arms and at centromeres. Trends Genet 21: 405-412.
32. Jones C, Slijepcevic P, Marsh S, Baker E, Langdon WY, et al. (1994) Physical linkage of the fragile site FRA11B and a Jacobsen syndrome chromosome deletion breakpoint in 11q23.3. Hum Mol Genet 3: 2123-2130.
33. Lemoine FJ, Degtyareva NP, Lobachev K, Petes TD, (2005) Chromosomal translocations in yeast induced by low levels of DNA polymerase a model for chromosome fragile sites. Cell 120: 587-598.
34. Kolodner RD, Putnam CD, Myung K, (2002) Maintenance of genome stability in Saccharomyces cerevisiae. Science 297: 552-557.
35. Nemec AA, Wallace SS, Sweasy JB, (2010) Variant base excision repair proteins: contributors to genomic instability. Semin Cancer Biol 20: 320-328.
36. Thompson SL, Bakhoum SF, Compton DA, (2010) Mechanisms of chromosomal instability. Curr Biol 20: R285-295.
37. Pangilinan F, Spencer F, (1996) Abnormal kinetochore structure activates the spindle assembly checkpoint in budding yeast. Mol Biol Cell 7: 1195-1208.
38. Ito H, Fukuda Y, Murata K, Kimura A, (1983) Transformation of intact yeast cells treated with alkali cations. J Bacteriol 153: 163-168.
39. Guthrie C, Fink G (2004) Guide to yeast genetics and molecular and cell biology. San Diego: Elsevier Academic Press.
40. Hall BM, Ma CX, Liang P, Singh KK, (2009) Fluctuation analysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis. Bioinformatics 25: 1564-1565.
41. Sarkar S, Ma WT, Sandri GH, (1992) On fluctuation analysis: a new, simple and efficient method for computing the expected number of mutants. Genetica 85: 173-179.
42. Guldener U, Heck S, Fielder T, Beinhauer J, Hegemann JH, (1996) A new efficient gene disruption cassette for repeated use in budding yeast. Nucleic Acids Res 24: 2519-2524.
43. Storchova Z, Breneman A, Cande J, Dunn J, Burbank K, et al. (2006) Genome-wide genetic analysis of polyploidy in yeast. Nature 443: 541-547.
44. Lang GI, Murray AW, (2008) Estimating the per-base-pair mutation rate in the yeast Saccharomyces cerevisiae. Genetics 178: 67-82.
45. Barber TD, McManus K, Yuen KW, Reis M, Parmigiani G, et al. (2008) Chromatid cohesion defects may underlie chromosome instability in human colorectal cancers. Proc Natl Acad Sci U S A 105: 3443-3448.
46. Marinoni G, Manuel M, Petersen RF, Hvidtfeldt J, Sulo P, et al. (1999) Horizontal transfer of genetic material among Saccharomyces yeasts. J Bacteriol 181: 6488-6496.
47. Kellis M, Patterson N, Endrizzi M, Birren B, Lander ES, (2003) Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423: 241-254.
48. Scannell DR, Zill OA, Rokas A, Payen C, Dunham MJ, et al. (2011) The awesome power of yeast evolutionary genetics: new genome sequences and strain resources for the Saccharomyces sensu stricto genus. G3: Genes, Genomes, Genetics 1: 11-25.
49. Hill A, Bloom K, (1987) Genetic manipulation of centromere function. Mol Cell Biol 7: 2397-2405.
50. Rad MR, Xu G, Hollenberg CP, (1992) STE50, a novel gene required for activation of conjugation at an early step in mating in Saccharomyces cerevisiae. Mol Gen Genet 236: 145-154.
51. Hawthorne DC, (1963) A Deletion in Yeast and Its Bearing on the Structure of the Mating Type Locus. Genetics 48: 1727-1729.
52. Fitzgerald-Hayes M, Clarke L, Carbon J, (1982) Nucleotide sequence comparisons and functional analysis of yeast centromere DNAs. Cell 29: 235-244.
53. McGrew J, Diehl B, Fitzgerald-Hayes M, (1986) Single base-pair mutations in centromere element III cause aberrant chromosome segregation in Saccharomyces cerevisiae. Mol Cell Biol 6: 530-538.
54. Bensasson D, Zarowiecki M, Burt A, Koufopanou V, (2008) Rapid evolution of yeast centromeres in the absence of drive. Genetics 178: 2161-2167.
55. Feng W, Bachant J, Collingwood D, Raghuraman MK, Brewer BJ, (2009) Centromere replication timing determines different forms of genomic instability in Saccharomyces cerevisiae checkpoint mutants during replication stress. Genetics 183: 1249-1260.
56. Wyrick JJ, Aparicio JG, Chen T, Barnett JD, Jennings EG, et al. (2001) Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins. Science 294: 2357-2360.
57. Raghuraman MK, Winzeler EA, Collingwood D, Hunt S, Wodicka L, et al. (2001) Replication dynamics of the yeast genome. Science 294: 115-121.
58. Newlon CS, Theis JF, (2002) DNA replication joins the revolution: whole-genome views of DNA replication in budding yeast. Bioessays 24: 300-304.
59. Shonn MA, McCarroll R, Murray AW, (2000) Requirement of the spindle checkpoint for proper chromosome segregation in budding yeast meiosis. Science 289: 300-303.
60. Delneri D, Hoyle DC, Gkargkas K, Cross EJ, Rash B, et al. (2008) Identification and characterization of high-flux-control genes of yeast through competition analyses in continuous cultures. Nat Genet 40: 113-117.
61. Lee HY, Chou JY, Cheong L, Chang NH, Yang SY, et al. (2008) Incompatibility of nuclear and mitochondrial genomes causes hybrid sterility between two yeast species. Cell 135: 1065-1073.
62. Kim YH, Ishikawa D, Ha HP, Sugiyama M, Kaneko Y, et al. (2006) Chromosome XII context is important for rDNA function in yeast. Nucleic Acids Res 34: 2914-2924.
63. Ide S, Miyazaki T, Maki H, Kobayashi T, (2010) Abundance of ribosomal RNA gene copies maintains genome integrity. Science 327: 693-696.
64. Henikoff S, Ahmad K, Malik HS, (2001) The centromere paradox: stable inheritance with rapidly evolving DNA. Science 293: 1098-1102.
65. Campbell DA, Fogel S, (1977) Association of chromosome loss with centromere-adjacent mitotic recombination in a yeast disomic haploid. Genetics 85: 573-585.
66. Paek AL, Kaochar S, Jones H, Elezaby A, Shanks L, et al. (2009) Fusion of nearby inverted repeats by a replication-based mechanism leads to formation of dicentric and acentric chromosomes that cause genome instability in budding yeast. Genes Dev 23: 2861-2875.
67. Mieczkowski PA, Lemoine FJ, Petes TD, (2006) Recombination between retrotransposons as a source of chromosome rearrangements in the yeast Saccharomyces cerevisiae. DNA Repair (Amst) 5: 1010-1020.
68. Umezu K, Hiraoka M, Mori M, Maki H, (2002) Structural analysis of aberrant chromosomes that occur spontaneously in diploid Saccharomyces cerevisiae: retrotransposon Ty1 plays a crucial role in chromosomal rearrangements. Genetics 160: 97-110.
69. Szilard RK, Jacques PE, Laramee L, Cheng B, Galicia S, et al. (2010) Systematic identification of fragile sites via genome-wide location analysis of gamma-H2AX. Nat Struct Mol Biol 17: 299-305.
70. Singh ND, Petrov DA, (2007) Evolution of gene function on the X chromosome versus the autosomes. Genome Dyn 3: 101-118.
71. Ellegren H, (2009) The different levels of genetic diversity in sex chromosomes and autosomes. Trends Genet 25: 278-284.
72. Bachtrog D, Kirkpatrick M, Mank JE, McDaniel SF, Pires JC, et al. (2011) Are all sex chromosomes created equal? Trends Genet 27: 350-357.
73. Knop M, (2006) Evolution of the hemiascomycete yeasts: on life styles and the importance of inbreeding. Bioessays 28: 696-708.
74. Gordon JL, Armisen D, Proux-Wera E, OhEigeartaigh SS, Byrne KP, et al. (2011) Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents. Proc Natl Acad Sci U S A 108: 20024-20029.
75. Lockhart SR, Pujol C, Daniels KJ, Miller MG, Johnson AD, et al. (2002) In Candida albicans, white-opaque switchers are homozygous for mating type. Genetics 162: 737-745.
76. Wu W, Pujol C, Lockhart SR, Soll DR, (2005) Chromosome loss followed by duplication is the major mechanism of spontaneous mating-type locus homozygosis in Candida albicans. Genetics 169: 1311-1327.