메뉴 건너뛰기




Volumn 110, Issue 28, 2013, Pages 11308-11313

Use of anion-aromatic interactions to position the general base in the ketosteroid isomerase active site

Author keywords

Enzyme catalysis; General base catalysis; Noncovalent interactions

Indexed keywords

ANION; AROMATIC COMPOUND; ASPARTIC ACID; PHENYLALANINE; STEROID DELTA ISOMERASE;

EID: 84879969716     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1206710110     Document Type: Article
Times cited : (55)

References (47)
  • 3
    • 0023384982 scopus 로고
    • Engineering enzyme specificity by 'substrate-assisted catalysis'
    • Carter P, Wells JA (1987) Engineering enzyme specificity by "substrate-assisted catalysis" Science 237(4813):394-399. (Pubitemid 17102585)
    • (1987) Science , vol.237 , Issue.4813 , pp. 394-399
    • Carter, P.1    Wells, J.A.2
  • 4
    • 0024280501 scopus 로고
    • Dissecting the catalytic triad of a serine protease
    • Carter P, Wells JA (1988) Dissecting the catalytic triad of a serine protease. Nature 332(6164):564-568.
    • (1988) Nature , vol.332 , Issue.6164 , pp. 564-568
    • Carter, P.1    Wells, J.A.2
  • 5
    • 0021828928 scopus 로고
    • Hydrogen bonding and biological specificity analysed by protein engineering
    • DOI 10.1038/314235a0
    • Fersht AR, et al. (1985) Hydrogen bonding and biological specificity analysed by protein engineering. Nature 314(6008):235-238. (Pubitemid 15076511)
    • (1985) Nature , vol.314 , Issue.6008 , pp. 235-238
    • Fersht, A.R.1    Shi, J.P.2    Knill-Jones, J.3
  • 6
    • 0030043489 scopus 로고    scopus 로고
    • Cation-pi interactions in chemistry and biology: A new view of benzene, Phe, Tyr, and Trp
    • Dougherty DA (1996) Cation-pi interactions in chemistry and biology: A new view of benzene, Phe, Tyr, and Trp. Science 271(5246):163-168.
    • (1996) Science , vol.271 , Issue.5246 , pp. 163-168
    • Dougherty, D.A.1
  • 7
    • 4243468938 scopus 로고    scopus 로고
    • The Cationminus signpi Interaction
    • Ma JC, Dougherty DA (1997) The Cationminus signpi Interaction. Chem Rev 97(5):1303-1324.
    • (1997) Chem Rev , vol.97 , Issue.5 , pp. 1303-1324
    • Ma, J.C.1    Dougherty, D.A.2
  • 8
    • 34547529693 scopus 로고    scopus 로고
    • A preference for edgewise interactions between aromatic rings and carboxylate anions: The biological relevance of anion-quadrupole interactions
    • Jackson MR, et al. (2007) A preference for edgewise interactions between aromatic rings and carboxylate anions: The biological relevance of anion-quadrupole interactions. J Phys Chem B 111(28):8242- 8249.
    • (2007) J Phys Chem B , vol.111 , Issue.28 , pp. 8242-8249
    • Jackson, M.R.1
  • 9
    • 79953701671 scopus 로고    scopus 로고
    • A survey of aspartate-phenylalanine and glutamate-phenylalanine interactions in the protein data bank: Searching for anion-π pairs
    • Philip V, et al. (2011) A survey of aspartate-phenylalanine and glutamate-phenylalanine interactions in the protein data bank: Searching for anion-π pairs. Biochemistry 50(14):2939-2950.
    • (2011) Biochemistry , vol.50 , Issue.14 , pp. 2939-2950
    • Philip, V.1
  • 11
    • 79955766939 scopus 로고    scopus 로고
    • Aromatic rings in chemical and biological recognition: Energetics and structures
    • Salonen LM, Ellermann M, Diederich F (2011) Aromatic rings in chemical and biological recognition: Energetics and structures. Angew Chem Int Ed Engl 50(21):4808-4842.
    • (2011) Angew Chem Int Ed Engl , vol.50 , Issue.21 , pp. 4808-4842
    • Salonen, L.M.1    Ellermann, M.2    Diederich, F.3
  • 13
    • 0020173901 scopus 로고
    • Electronic distributions within protein phenylalanine aromatic rings are reflected by the three-dimensional oxygen atom environments
    • Thomas KA, Smith GM, Thomas TB, Feldmann RJ (1982) Electronic distributions within protein phenylalanine aromatic rings are reflected by the three-dimensional oxygen atom environments. Proc Natl Acad Sci USA 79(16):4843-4847.
    • (1982) Proc Natl Acad Sci USA , vol.79 , Issue.16 , pp. 4843-4847
    • Thomas, K.A.1    Smith, G.M.2    Thomas, T.B.3    Feldmann, R.J.4
  • 14
    • 67549086082 scopus 로고    scopus 로고
    • Understanding the functional roles of amino acid residues in enzyme catalysis
    • Holliday GL, Mitchell JB, Thornton JM (2009) Understanding the functional roles of amino acid residues in enzyme catalysis. J Mol Biol 390(3):560-577.
    • (2009) J Mol Biol , vol.390 , Issue.3 , pp. 560-577
    • Holliday, G.L.1    Mitchell, J.B.2    Thornton, J.M.3
  • 15
    • 0000346064 scopus 로고    scopus 로고
    • Solution structure of 3-oxo-delta5-steroid isomerase
    • Wu ZR, et al. (1997) Solution structure of 3-oxo-delta5-steroid isomerase. Science 276 (5311):415-418.
    • (1997) Science , vol.276 , Issue.5311 , pp. 415-418
    • Wu, Z.R.1
  • 16
    • 0032499672 scopus 로고    scopus 로고
    • 5-3-ketosteroid isomerase from Pseudomonas testosteroni
    • DOI 10.1021/bi9801614
    • Cho HS, Choi G, Choi KY, Oh BH (1998) Crystal structure and enzyme mechanism of Delta 5-3-ketosteroid isomerase from Pseudomonas testosteroni. Biochemistry 37(23):8325-8330. (Pubitemid 28275451)
    • (1998) Biochemistry , vol.37 , Issue.23 , pp. 8325-8330
    • Cho, H.-S.1    Choi, G.2    Choi, K.Y.3    Oh, B.-H.4
  • 17
    • 0022506103 scopus 로고
    • 5-steroid isomerase. Substrate catalysis and inhibition by (3S)-spiro[5alpha-androstane-3,2′-oxiran]-17-one
    • Pollack RM, Bantia S, Bounds PL, Koffman BM (1986) pH dependence of the kinetic parameters for 3-oxo-delta 5-steroid isomerase. Substrate catalysis and inhibition by (3S)-spiro[5 alpha-androstane-3,2′-oxiran]-17-one. Biochemistry 25(8):1905-1911. (Pubitemid 16036000)
    • (1986) Biochemistry , vol.25 , Issue.8 , pp. 1905-1911
    • Pollack, R.M.1    Bantia, S.2    Bounds, P.L.3    Koffman, B.M.4
  • 18
    • 0344564131 scopus 로고    scopus 로고
    • Roles of active site aromatic residues in catalysis by ketosteroid isomerase from Pseudomonas putida biotype B
    • Kim DH, et al. (1999) Roles of active site aromatic residues in catalysis by ketosteroid isomerase from Pseudomonas putida biotype B. Biochemistry 38(42):13810-13819.
    • (1999) Biochemistry , vol.38 , Issue.42 , pp. 13810-13819
    • Kim, D.H.1
  • 20
    • 0028043450 scopus 로고
    • Reaction energetics of a mutant 3-oxo-delta 5-steroid isomerase with an altered active site base (D38E)
    • Zawrotny ME, Pollack RM (1994) Reaction energetics of a mutant 3-oxo-delta 5-steroid isomerase with an altered active site base (D38E). Biochemistry 33(46):13896 -13902.
    • (1994) Biochemistry , vol.33 , Issue.46 , pp. 13896-13902
    • Zawrotny, M.E.1    Pollack, R.M.2
  • 21
    • 13644271603 scopus 로고    scopus 로고
    • Positional ordering of reacting groups contributes significantly to the efficiency of proton transfer at an antibody active site
    • DOI 10.1021/ja044647l
    • Seebeck FP, Hilvert D (2005) Positional ordering of reacting groups contributes significantly to the efficiency of proton transfer at an antibody active site. J Am Chem Soc 127(4):1307-1312. (Pubitemid 40228701)
    • (2005) Journal of the American Chemical Society , vol.127 , Issue.4 , pp. 1307-1312
    • Seebeck, F.P.1    Hilvert, D.2
  • 22
    • 0022971122 scopus 로고
    • Reaction energetics of a mutant triosephosphate isomerase in which the active-site glutamate has been changed to aspartate
    • DOI 10.1021/bi00370a057
    • Raines RT, Sutton EL, Straus DR, Gilbert W, Knowles JR (1986) Reaction energetics of a mutant triosephosphate isomerase in which the active-site glutamate has been changed to aspartate. Biochemistry 25(22):7142-7154. (Pubitemid 17201621)
    • (1986) Biochemistry , vol.25 , Issue.22 , pp. 7142-7154
    • Raines, R.T.1    Sutton, E.L.2    Straus, D.R.3
  • 23
    • 0012050104 scopus 로고
    • Site-directed mutagenesis of putative activesite residues of Bacillus stearothermophilus α-amylase
    • Vihinen M, Helin S, Mantsala P (1991) Site-directed mutagenesis of putative activesite residues of Bacillus stearothermophilus α-amylase. Mol Eng 1:267-273.
    • (1991) Mol Eng , vol.1 , pp. 267-273
    • Vihinen, M.1    Helin, S.2    Mantsala, P.3
  • 24
    • 0029759746 scopus 로고    scopus 로고
    • Effects of both shortening and lengthening the active site nucleophile of Bacillus circulans xylanase on catalytic activity
    • DOI 10.1021/bi960586v
    • Lawson SL, Wakarchuk WW, Withers SG (1996) Effects of both shortening and lengthening the active site nucleophile of Bacillus circulans xylanase on catalytic activity. Biochemistry 35(31):10110-10118. (Pubitemid 26269927)
    • (1996) Biochemistry , vol.35 , Issue.31 , pp. 10110-10118
    • Lawson, S.L.1    Wakarchuk, W.W.2    Withers, S.G.3
  • 25
    • 0029000696 scopus 로고
    • Knowledge-based potentials for proteins
    • Sippl MJ (1995) Knowledge-based potentials for proteins. Curr Opin Struct Biol 5(2):229-235.
    • (1995) Curr Opin Struct Biol , vol.5 , Issue.2 , pp. 229-235
    • Sippl, M.J.1
  • 26
    • 33746592898 scopus 로고    scopus 로고
    • Knowledge-based potentials in protein design
    • DOI 10.1016/j.sbi.2006.06.013, PII S0959440X06001175
    • Poole AM, Ranganathan R (2006) Knowledge-based potentials in protein design. Curr Opin Struct Biol 16(4):508-513. (Pubitemid 44149074)
    • (2006) Current Opinion in Structural Biology , vol.16 , Issue.4 , pp. 508-513
    • Poole, A.M.1    Ranganathan, R.2
  • 27
    • 33749077506 scopus 로고    scopus 로고
    • Prediction of protein-protein interaction based on structure
    • Fernandez-Ballester G, Serrano L (2006) Prediction of protein-protein interaction based on structure. Methods Mol Biol 340:207-234.
    • (2006) Methods Mol Biol , vol.340 , pp. 207-234
    • Fernandez-Ballester, G.1    Serrano, L.2
  • 28
    • 0345864027 scopus 로고    scopus 로고
    • The Catalytic Site Atlas: A resource of catalytic sites and residues identified in enzymes using structural data
    • Porter CT, Bartlett GJ, Thornton JM (2004) The Catalytic Site Atlas: A resource of catalytic sites and residues identified in enzymes using structural data. Nucleic Acids Res 32D129-D133.
    • (2004) Nucleic Acids Res , vol.32
    • Porter, C.T.1    Bartlett, G.J.2    Thornton, J.M.3
  • 30
    • 33846120419 scopus 로고    scopus 로고
    • MACiE (Mechanism, Annotation and Classification in Enzymes): Novel tools for searching catalytic mechanisms
    • Holliday GL, et al. (2007) MACiE (Mechanism, Annotation and Classification in Enzymes): Novel tools for searching catalytic mechanisms. Nucleic Acids Res 35D515-D520.
    • (2007) Nucleic Acids Res , vol.35
    • Holliday, G.L.1
  • 31
    • 78651330012 scopus 로고    scopus 로고
    • BRENDA, the enzyme information system in 2011
    • Scheer M, et al. (2011) BRENDA, the enzyme information system in 2011. Nucleic Acids Res 39D670-D676.
    • (2011) Nucleic Acids Res , vol.39
    • Scheer, M.1
  • 32
    • 84860833500 scopus 로고    scopus 로고
    • Reorganizing the protein space at the Universal Protein Resource (UniProt)
    • Consortium TU; UniProt Consortium
    • Consortium TU; UniProt Consortium (2012) Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Res 40(Database issue):D71-D75.
    • (2012) Nucleic Acids Res , vol.40 , Issue.DATABASE ISSUE
  • 34
    • 84873655639 scopus 로고    scopus 로고
    • Ground state destabilization from a positioned general base in the ketosteroid isomerase active site
    • Ruben EA, et al. (2013) Ground state destabilization from a positioned general base in the ketosteroid isomerase active site. Biochemistry 52(6):1074-1081.
    • (2013) Biochemistry , vol.52 , Issue.6 , pp. 1074-1081
    • Ruben, E.A.1
  • 35
    • 70149104037 scopus 로고    scopus 로고
    • Determining the catalytic role of remote substrate binding interactions in ketosteroid isomerase
    • Schwans JP, Kraut DA, Herschlag D (2009) Determining the catalytic role of remote substrate binding interactions in ketosteroid isomerase. Proc Natl Acad Sci USA 106(34):14271-14275.
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.34 , pp. 14271-14275
    • Schwans, J.P.1    Kraut, D.A.2    Herschlag, D.3
  • 36
    • 0033578302 scopus 로고    scopus 로고
    • Cation-pi interactions in structural biology
    • Gallivan JP, Dougherty DA (1999) Cation-pi interactions in structural biology. Proc Natl Acad Sci USA 96(17):9459-9464.
    • (1999) Proc Natl Acad Sci USA , vol.96 , Issue.17 , pp. 9459-9464
    • Gallivan, J.P.1    Dougherty, D.A.2
  • 37
    • 0242417008 scopus 로고    scopus 로고
    • Interactions with aromatic rings in chemical and biological recognition
    • DOI 10.1002/anie.200390319
    • Meyer EA, Castellano RK, Diederich F (2003) Interactions with aromatic rings in chemical and biological recognition. Angew Chem Int Ed Engl 42(11):1210-1250. (Pubitemid 36410287)
    • (2003) Angewandte Chemie - International Edition , vol.42 , Issue.11 , pp. 1210-1250
    • Meyer, E.A.1    Castellano, R.K.2    Diederich, F.3
  • 38
    • 43449120151 scopus 로고    scopus 로고
    • Physical organic chemistry on the brain
    • Dougherty DA (2008) Physical organic chemistry on the brain. J Org Chem 73(10):3667-3673.
    • (2008) J Org Chem , vol.73 , Issue.10 , pp. 3667-3673
    • Dougherty, D.A.1
  • 39
    • 0036591656 scopus 로고    scopus 로고
    • Cation-pi interactions in ligand recognition and catalysis
    • DOI 10.1016/S0165-6147(02)02027-8, PII S0165614702020278
    • Zacharias N, Dougherty DA (2002) Cation-pi interactions in ligand recognition and catalysis. Trends Pharmacol Sci 23(6):281-287. (Pubitemid 34655734)
    • (2002) Trends in Pharmacological Sciences , vol.23 , Issue.6 , pp. 281-287
    • Zacharias, N.1    Dougherty, D.A.2
  • 40
    • 0029828395 scopus 로고    scopus 로고
    • Cation-pi bonding and amino-aromatic interactions in the biomolecular recognition of substituted ammonium ligands
    • Scrutton NS, Raine AR (1996) Cation-pi bonding and amino-aromatic interactions in the biomolecular recognition of substituted ammonium ligands. Biochem J 319(Pt 1):1-8. (Pubitemid 26394730)
    • (1996) Biochemical Journal , vol.319 , Issue.1 , pp. 1-8
    • Scrutton, N.S.1    Raine, A.R.C.2
  • 41
    • 76649126435 scopus 로고    scopus 로고
    • Dissecting the paradoxical effects of hydrogen bond mutations in the ketosteroid isomerase oxyanion hole
    • Kraut DA, Sigala PA, Fenn TD, Herschlag D (2010) Dissecting the paradoxical effects of hydrogen bond mutations in the ketosteroid isomerase oxyanion hole. Proc Natl Acad Sci USA 107(5):1960-1965.
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.5 , pp. 1960-1965
    • Kraut, D.A.1    Sigala, P.A.2    Fenn, T.D.3    Herschlag, D.4
  • 42
    • 56649122007 scopus 로고    scopus 로고
    • New paradigm for macromolecular crystallography experiments at SSRL: Automated crystal screening and remote data collection
    • Soltis SM, et al. (2008) New paradigm for macromolecular crystallography experiments at SSRL: Automated crystal screening and remote data collection. Acta Crystallogr D Biol Crystallogr 64(Pt 12):1210-1221.
    • (2008) Acta Crystallogr D Biol Crystallogr , vol.64 , Issue.PART 12 , pp. 1210-1221
    • Soltis, S.M.1
  • 44
    • 0028103275 scopus 로고
    • The CCP4 suite: Programs for protein crystallography
    • Collaborative Computational Project, Number 4
    • Collaborative Computational Project, Number 4 (1994) The CCP4 suite: Programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 50(Pt 5):760-763.
    • (1994) Acta Crystallogr D Biol Crystallogr , vol.50 , Issue.PART 5 , pp. 760-763
  • 46
    • 10844268381 scopus 로고    scopus 로고
    • The new CCP4 Coordinate Library as a toolkit for the design of coordinate-related applications in protein crystallography
    • Krissinel EB, et al. (2004) The new CCP4 Coordinate Library as a toolkit for the design of coordinate-related applications in protein crystallography. Acta Crystallogr D Biol Crystallogr 60(Pt 12 Pt 1):2250-2255.
    • (2004) Acta Crystallogr D Biol Crystallogr , vol.60 , Issue.PART 12 PART 1 , pp. 2250-2255
    • Krissinel, E.B.1
  • 47
    • 13244281317 scopus 로고    scopus 로고
    • Coot: Model-building tools for molecular graphics
    • Emsley P, Cowtan K (2004) Coot: Model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 60(Pt 12 Pt 1):2126-2132.
    • (2004) Acta Crystallogr D Biol Crystallogr , vol.60 , Issue.PART 12 PART 1 , pp. 2126-2132
    • Emsley, P.1    Cowtan, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.