메뉴 건너뛰기




Volumn 12, Issue 7, 2013, Pages 3233-3245

Adaptation of a commonly used, chemically defined medium for human embryonic stem cells to stable isotope labeling with amino acids in cell culture

Author keywords

chemically defined medium; human embryonic stem cells; metabolic labeling; SILAC

Indexed keywords

AMINO ACID; ISOTOPE;

EID: 84879965225     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr400099j     Document Type: Article
Times cited : (7)

References (98)
  • 1
    • 0037112559 scopus 로고    scopus 로고
    • Derivation and potential applications of human embryonic stem cells
    • Gepstein, L. Derivation and potential applications of human embryonic stem cells Circ. Res. 2002, 91, 866-876
    • (2002) Circ. Res. , vol.91 , pp. 866-876
    • Gepstein, L.1
  • 2
    • 27644582657 scopus 로고    scopus 로고
    • Therapeutic potential of embryonic stem cells
    • Lerou, P. H.; Daley, G. Q. Therapeutic potential of embryonic stem cells Blood Rev. 2005, 19, 321-331
    • (2005) Blood Rev. , vol.19 , pp. 321-331
    • Lerou, P.H.1    Daley, G.Q.2
  • 3
    • 34547913091 scopus 로고    scopus 로고
    • Stem cells: A revolution in therapeutics-Recent advances in stem cell biology and their therapeutic applications in regenerative medicine and cancer therapies
    • Mimeault, M.; Hauke, R.; Batra, S. K. Stem cells: A revolution in therapeutics-Recent advances in stem cell biology and their therapeutic applications in regenerative medicine and cancer therapies Clin. Pharmacol. Ther. 2007, 82, 252-264
    • (2007) Clin. Pharmacol. Ther. , vol.82 , pp. 252-264
    • Mimeault, M.1    Hauke, R.2    Batra, S.K.3
  • 4
    • 0036017195 scopus 로고    scopus 로고
    • Pluripotent stem cells-Model of embryonic development, tool for gene targeting, and basis of cell therapy
    • Prelle, K.; Zink, N.; Wolf, E. Pluripotent stem cells-Model of embryonic development, tool for gene targeting, and basis of cell therapy Anat. Histol. Embryol. 2002, 31, 169-186
    • (2002) Anat. Histol. Embryol. , vol.31 , pp. 169-186
    • Prelle, K.1    Zink, N.2    Wolf, E.3
  • 5
    • 78149487692 scopus 로고    scopus 로고
    • Pluripotency and cellular reprogramming: Facts, hypotheses, unresolved issues
    • Hanna, J. H.; Saha, K.; Jaenisch, R. Pluripotency and cellular reprogramming: Facts, hypotheses, unresolved issues Cell 2010, 143, 508-525
    • (2010) Cell , vol.143 , pp. 508-525
    • Hanna, J.H.1    Saha, K.2    Jaenisch, R.3
  • 6
    • 84856112882 scopus 로고    scopus 로고
    • Diseases in a dish: Modeling human genetic disorders using induced pluripotent cells
    • Tiscornia, G.; Vivas, E. L.; Belmonte, J. C. I. Diseases in a dish: Modeling human genetic disorders using induced pluripotent cells Nat. Med. 2011, 1570-1576
    • (2011) Nat. Med. , pp. 1570-1576
    • Tiscornia, G.1    Vivas, E.L.2    Belmonte, J.C.I.3
  • 7
    • 67449107495 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture (SILAC) and quantitative comparison of the membrane proteomes of self-renewing and differentiating human embryonic stem cells
    • Prokhorova, T. A.; Rigbolt, K. T. G.; Johansen, P. T.; Henningsen, J.; Kratchmarova, I.; Kassem, M.; Blagoev, B. Stable isotope labeling by amino acids in cell culture (SILAC) and quantitative comparison of the membrane proteomes of self-renewing and differentiating human embryonic stem cells Mol. Cell Proteomics 2009, 8, 959-970
    • (2009) Mol. Cell Proteomics , vol.8 , pp. 959-970
    • Prokhorova, T.A.1    Rigbolt, K.T.G.2    Johansen, P.T.3    Henningsen, J.4    Kratchmarova, I.5    Kassem, M.6    Blagoev, B.7
  • 8
    • 80053990972 scopus 로고    scopus 로고
    • An enhanced chemically defined SILAC culture system for quantitative proteomics study of human embryonic stem cells
    • Wang, S.; Tian, R.; Li, L.; Figeys, D.; Wang, L. An enhanced chemically defined SILAC culture system for quantitative proteomics study of human embryonic stem cells Proteomics 2011, 11, 4040-4046
    • (2011) Proteomics , vol.11 , pp. 4040-4046
    • Wang, S.1    Tian, R.2    Li, L.3    Figeys, D.4    Wang, L.5
  • 9
    • 77958056802 scopus 로고    scopus 로고
    • Direct comparison of stable isotope labeling by amino acids in cell culture and spectral counting for quantitative proteomics
    • Collier, T. S.; Sarkar, P.; Franck, W. L.; Rao, B. M.; Dean, R. A.; Muddiman, D. C. Direct comparison of stable isotope labeling by amino acids in cell culture and spectral counting for quantitative proteomics Anal. Chem. 2010, 82, 8696-8702
    • (2010) Anal. Chem. , vol.82 , pp. 8696-8702
    • Collier, T.S.1    Sarkar, P.2    Franck, W.L.3    Rao, B.M.4    Dean, R.A.5    Muddiman, D.C.6
  • 10
    • 42649132889 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins
    • Graumann, J.; Hubner, N. C.; Kim, J. B.; Ko, K.; Moser, M.; Kumar, C.; Cox, J.; Schöler, H.; Mann, M. Stable isotope labeling by amino acids in cell culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins Mol. Cell Proteomics 2008, 7, 672-683
    • (2008) Mol. Cell Proteomics , vol.7 , pp. 672-683
    • Graumann, J.1    Hubner, N.C.2    Kim, J.B.3    Ko, K.4    Moser, M.5    Kumar, C.6    Cox, J.7    Schöler, H.8    Mann, M.9
  • 12
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    • Ong, S.-E.; Blagoev, B.; Kratchmarova, I.; Kristensen, D. B.; Steen, H.; Pandey, A.; Mann, M. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics Mol. Cell Proteomics 2002, 1, 376-386
    • (2002) Mol. Cell Proteomics , vol.1 , pp. 376-386
    • Ong, S.-E.1    Blagoev, B.2    Kratchmarova, I.3    Kristensen, D.B.4    Steen, H.5    Pandey, A.6    Mann, M.7
  • 13
    • 33750336592 scopus 로고    scopus 로고
    • Quantitative proteomics to study mitogen-activated protein kinases
    • Blagoev, B.; Mann, M. Quantitative proteomics to study mitogen-activated protein kinases Methods 2006, 40, 243-250
    • (2006) Methods , vol.40 , pp. 243-250
    • Blagoev, B.1    Mann, M.2
  • 15
    • 0037337310 scopus 로고    scopus 로고
    • A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling
    • Blagoev, B.; Kratchmarova, I.; Ong, S.-E.; Nielsen, M.; Foster, L. J.; Mann, M. A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling Nat. Biotechnol. 2003, 21, 315-318
    • (2003) Nat. Biotechnol. , vol.21 , pp. 315-318
    • Blagoev, B.1    Kratchmarova, I.2    Ong, S.-E.3    Nielsen, M.4    Foster, L.J.5    Mann, M.6
  • 17
    • 4444371652 scopus 로고    scopus 로고
    • Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics
    • Blagoev, B.; Ong, S.-E.; Kratchmarova, I.; Mann, M. Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics Nat. Biotechnol. 2004, 22, 1139-1145
    • (2004) Nat. Biotechnol. , vol.22 , pp. 1139-1145
    • Blagoev, B.1    Ong, S.-E.2    Kratchmarova, I.3    Mann, M.4
  • 19
    • 33749523582 scopus 로고    scopus 로고
    • Organellar proteomics: Turning inventories into insights
    • Andersen, J. S.; Mann, M. Organellar proteomics: Turning inventories into insights EMBO Rep. 2006, 7, 874-879
    • (2006) EMBO Rep. , vol.7 , pp. 874-879
    • Andersen, J.S.1    Mann, M.2
  • 20
    • 33750456519 scopus 로고    scopus 로고
    • Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
    • Olsen, J. V.; Blagoev, B.; Gnad, F.; Macek, B.; Kumar, C.; Mortensen, P.; Mann, M. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks Cell 2006, 127, 635-648
    • (2006) Cell , vol.127 , pp. 635-648
    • Olsen, J.V.1    Blagoev, B.2    Gnad, F.3    Macek, B.4    Kumar, C.5    Mortensen, P.6    Mann, M.7
  • 22
    • 22844436250 scopus 로고    scopus 로고
    • Quantitative mouse brain proteomics using culture-derived isotope tags as internal standards
    • Ishihama, Y.; Sato, T.; Tabata, T.; Miyamoto, N.; Sagane, K.; Nagasu, T.; Oda, Y. Quantitative mouse brain proteomics using culture-derived isotope tags as internal standards Nat. Biotechnol. 2005, 23, 617-621
    • (2005) Nat. Biotechnol. , vol.23 , pp. 617-621
    • Ishihama, Y.1    Sato, T.2    Tabata, T.3    Miyamoto, N.4    Sagane, K.5    Nagasu, T.6    Oda, Y.7
  • 23
    • 82755163993 scopus 로고    scopus 로고
    • Multidimensional strategy for sensitive phosphoproteomics incorporating protein prefractionation combined with SIMAC, HILIC, and TiO(2) chromatography applied to proximal EGF signaling
    • Engholm-Keller, K.; Hansen, T. A.; Palmisano, G.; Larsen, M. R. Multidimensional strategy for sensitive phosphoproteomics incorporating protein prefractionation combined with SIMAC, HILIC, and TiO(2) chromatography applied to proximal EGF signaling J. Proteome Res. 2011, 10, 5383-5397
    • (2011) J. Proteome Res. , vol.10 , pp. 5383-5397
    • Engholm-Keller, K.1    Hansen, T.A.2    Palmisano, G.3    Larsen, M.R.4
  • 24
    • 77956261339 scopus 로고    scopus 로고
    • Human embryonic stem cells: Derivation, culture, and differentiation: A review
    • Vazin, T.; Freed, W. J. Human embryonic stem cells: Derivation, culture, and differentiation: A review Restor. Neurol. Neurosci. 2010, 28, 589-603
    • (2010) Restor. Neurol. Neurosci. , vol.28 , pp. 589-603
    • Vazin, T.1    Freed, W.J.2
  • 25
    • 33751217707 scopus 로고    scopus 로고
    • Culture conditions for human embryonic stem cells
    • Skottman, H.; Hovatta, O. Culture conditions for human embryonic stem cells Reproduction 2006, 132, 691-698
    • (2006) Reproduction , vol.132 , pp. 691-698
    • Skottman, H.1    Hovatta, O.2
  • 27
    • 84860511295 scopus 로고    scopus 로고
    • Stable isotope labelling with amino acids in cell culture for human embryonic stem cell proteomic analysis
    • Harkness, L.; Prokhorova, T. A.; Kassem, M.; Blagoev, B. Stable isotope labelling with amino acids in cell culture for human embryonic stem cell proteomic analysis Methods Mol. Biol. 2012, 873, 297-305
    • (2012) Methods Mol. Biol. , vol.873 , pp. 297-305
    • Harkness, L.1    Prokhorova, T.A.2    Kassem, M.3    Blagoev, B.4
  • 29
    • 34948895016 scopus 로고    scopus 로고
    • Identification of potential pluripotency determinants for human embryonic stem cells following proteomic analysis of human and mouse fibroblast conditioned media
    • Prowse, A. B. J.; McQuade, L. R.; Bryant, K. J.; Marcal, H.; Gray, P. P. Identification of potential pluripotency determinants for human embryonic stem cells following proteomic analysis of human and mouse fibroblast conditioned media J. Proteome Res. 2007, 6, 3796-3807
    • (2007) J. Proteome Res. , vol.6 , pp. 3796-3807
    • Prowse, A.B.J.1    McQuade, L.R.2    Bryant, K.J.3    Marcal, H.4    Gray, P.P.5
  • 30
    • 0036744406 scopus 로고    scopus 로고
    • Proteome analysis of conditioned medium from mouse embryonic fibroblast feeder layers which support the growth of human embryonic stem cells
    • Lim, J. W. E.; Bodnar, A. Proteome analysis of conditioned medium from mouse embryonic fibroblast feeder layers which support the growth of human embryonic stem cells Proteomics 2002, 2, 1187-1203
    • (2002) Proteomics , vol.2 , pp. 1187-1203
    • Lim, J.W.E.1    Bodnar, A.2
  • 32
    • 79955525831 scopus 로고    scopus 로고
    • Lonely death dance of human pluripotent stem cells: ROCKing between metastable cell states
    • Ohgushi, M.; Sasai, Y. Lonely death dance of human pluripotent stem cells: ROCKing between metastable cell states Trends Cell Biol. 2011, 21, 274-282
    • (2011) Trends Cell Biol. , vol.21 , pp. 274-282
    • Ohgushi, M.1    Sasai, Y.2
  • 33
    • 18744375483 scopus 로고    scopus 로고
    • Basic FGF and suppression of BMP signaling sustain undifferentiated proliferation of human ES cells
    • Xu, R.-H.; Peck, R. M.; Li, D. S.; Feng, X.; Ludwig, T.; Thomson, J. A. Basic FGF and suppression of BMP signaling sustain undifferentiated proliferation of human ES cells Nat. Methods 2005, 2, 185-190
    • (2005) Nat. Methods , vol.2 , pp. 185-190
    • Xu, R.-H.1    Peck, R.M.2    Li, D.S.3    Feng, X.4    Ludwig, T.5    Thomson, J.A.6
  • 35
    • 79953230529 scopus 로고    scopus 로고
    • Rare cell proteomic reactor applied to stable isotope labeling by amino acids in cell culture (SILAC)-based quantitative proteomics study of human embryonic stem cell differentiation
    • Tian, R.; Wang, S.; Elisma, F.; Li, L.; Zhou, H.; Wang, L.; Figeys, D. Rare cell proteomic reactor applied to stable isotope labeling by amino acids in cell culture (SILAC)-based quantitative proteomics study of human embryonic stem cell differentiation Mol. Cell Proteomics 2011, 10, M110.000679
    • (2011) Mol. Cell Proteomics , vol.10 , pp. 110000679
    • Tian, R.1    Wang, S.2    Elisma, F.3    Li, L.4    Zhou, H.5    Wang, L.6    Figeys, D.7
  • 36
    • 20444375784 scopus 로고    scopus 로고
    • Human embryonic stem cells maintained in the absence of mouse embryonic fibroblasts or conditioned media are capable of hematopoietic development
    • Wang, L.; Li, L.; Menendez, P.; Cerdan, C.; Bhatia, M. Human embryonic stem cells maintained in the absence of mouse embryonic fibroblasts or conditioned media are capable of hematopoietic development Blood 2005, 105, 4598-4603
    • (2005) Blood , vol.105 , pp. 4598-4603
    • Wang, L.1    Li, L.2    Menendez, P.3    Cerdan, C.4    Bhatia, M.5
  • 39
    • 84859146628 scopus 로고    scopus 로고
    • Efficient iPS cell production with the MyoD transactivation domain in serum-free culture
    • Hirai, H.; Katoku-Kikyo, N.; Karian, P.; Firpo, M.; Kikyo, N. Efficient iPS cell production with the MyoD transactivation domain in serum-free culture PLoS ONE 2012, 7, e34149
    • (2012) PLoS ONE , vol.7 , pp. 34149
    • Hirai, H.1    Katoku-Kikyo, N.2    Karian, P.3    Firpo, M.4    Kikyo, N.5
  • 40
    • 84863338664 scopus 로고    scopus 로고
    • Maxadilan prevents apoptosis in iPS cells and shows no effects on the pluripotent state or karyotype
    • Zhao, Z.; Yu, R.; Yang, J.; Liu, X.; Tan, M.; Li, H.; Chen, J. Maxadilan prevents apoptosis in iPS cells and shows no effects on the pluripotent state or karyotype PLoS ONE 2012, 7, e33953
    • (2012) PLoS ONE , vol.7 , pp. 33953
    • Zhao, Z.1    Yu, R.2    Yang, J.3    Liu, X.4    Tan, M.5    Li, H.6    Chen, J.7
  • 41
    • 84864762783 scopus 로고    scopus 로고
    • Microfibrous substrate geometry as a critical trigger for organization, self-renewal, and differentiation of human embryonic stem cells within synthetic 3-dimensional microenvironments
    • Carlson, A. L.; Florek, C. A.; Kim, J. J.; Neubauer, T.; Moore, J. C.; Cohen, R. I.; Kohn, J.; Grumet, M.; Moghe, P. V. Microfibrous substrate geometry as a critical trigger for organization, self-renewal, and differentiation of human embryonic stem cells within synthetic 3-dimensional microenvironments FASEB J. 2012, 26, 3240-3251
    • (2012) FASEB J. , vol.26 , pp. 3240-3251
    • Carlson, A.L.1    Florek, C.A.2    Kim, J.J.3    Neubauer, T.4    Moore, J.C.5    Cohen, R.I.6    Kohn, J.7    Grumet, M.8    Moghe, P.V.9
  • 42
    • 84855846248 scopus 로고    scopus 로고
    • A 3D microfibrous scaffold for long-term human pluripotent stem cell self-renewal under chemically defined conditions
    • Lu, H. F.; Narayanan, K.; Lim, S.-X.; Gao, S.; Leong, M. F.; Wan, A. C. A. A 3D microfibrous scaffold for long-term human pluripotent stem cell self-renewal under chemically defined conditions Biomaterials 2012, 33, 2419-2430
    • (2012) Biomaterials , vol.33 , pp. 2419-2430
    • Lu, H.F.1    Narayanan, K.2    Lim, S.-X.3    Gao, S.4    Leong, M.F.5    Wan, A.C.A.6
  • 43
    • 79961153341 scopus 로고    scopus 로고
    • Banf1 is required to maintain the self-renewal of both mouse and human embryonic stem cells
    • Cox, J. L.; Mallanna, S. K.; Ormsbee, B. D.; Desler, M.; Wiebe, M. S.; Rizzino, A. Banf1 is required to maintain the self-renewal of both mouse and human embryonic stem cells J. Cell. Sci. 2011, 124, 2654-2665
    • (2011) J. Cell. Sci. , vol.124 , pp. 2654-2665
    • Cox, J.L.1    Mallanna, S.K.2    Ormsbee, B.D.3    Desler, M.4    Wiebe, M.S.5    Rizzino, A.6
  • 45
    • 79959910328 scopus 로고    scopus 로고
    • Soluble amyloid precursor protein induces rapid neural differentiation of human embryonic stem cells
    • Freude, K. K.; Penjwini, M.; Davis, J. L.; LaFerla, F. M.; Blurton-Jones, M. Soluble amyloid precursor protein induces rapid neural differentiation of human embryonic stem cells J. Biol. Chem. 2011, 286, 24264-24274
    • (2011) J. Biol. Chem. , vol.286 , pp. 24264-24274
    • Freude, K.K.1    Penjwini, M.2    Davis, J.L.3    Laferla, F.M.4    Blurton-Jones, M.5
  • 48
    • 79961014854 scopus 로고    scopus 로고
    • Large-scale phosphosite quantification in tissues by a spike-in SILAC method
    • Monetti, M.; Nagaraj, N.; Sharma, K.; Mann, M. Large-scale phosphosite quantification in tissues by a spike-in SILAC method Nat. Methods 2011, 8, 655-658
    • (2011) Nat. Methods , vol.8 , pp. 655-658
    • Monetti, M.1    Nagaraj, N.2    Sharma, K.3    Mann, M.4
  • 49
  • 50
    • 0036254608 scopus 로고    scopus 로고
    • Biochemical properties of a keratan sulphate/chondroitin sulphate proteoglycan expressed in primate pluripotent stem cells
    • Cooper, S.; Bennett, W.; Andrade, J.; Reubinoff, B. E.; Thomson, J.; Pera, M. F. Biochemical properties of a keratan sulphate/chondroitin sulphate proteoglycan expressed in primate pluripotent stem cells J. Anat. 2002, 200, 259-265
    • (2002) J. Anat. , vol.200 , pp. 259-265
    • Cooper, S.1    Bennett, W.2    Andrade, J.3    Reubinoff, B.E.4    Thomson, J.5    Pera, M.F.6
  • 51
    • 34548183872 scopus 로고    scopus 로고
    • Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips
    • Rappsilber, J.; Mann, M.; Ishihama, Y. Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips Nat. Protoc. 2007, 2, 1896-1906
    • (2007) Nat. Protoc. , vol.2 , pp. 1896-1906
    • Rappsilber, J.1    Mann, M.2    Ishihama, Y.3
  • 52
    • 3042815334 scopus 로고    scopus 로고
    • Trypsin cleaves exclusively C-terminal to arginine and lysine residues
    • Olsen, J. V.; Ong, S.-E.; Mann, M. Trypsin cleaves exclusively C-terminal to arginine and lysine residues Mol. Cell Proteomics 2004, 3, 608-614
    • (2004) Mol. Cell Proteomics , vol.3 , pp. 608-614
    • Olsen, J.V.1    Ong, S.-E.2    Mann, M.3
  • 53
    • 57449099865 scopus 로고    scopus 로고
    • MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
    • Cox, J.; Mann, M. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification Nat. Biotechnol. 2008, 26, 1367-1372
    • (2008) Nat. Biotechnol. , vol.26 , pp. 1367-1372
    • Cox, J.1    Mann, M.2
  • 54
    • 34147173417 scopus 로고    scopus 로고
    • On the proper use of mass accuracy in proteomics
    • Zubarev, R.; Mann, M. On the proper use of mass accuracy in proteomics Mol. Cell Proteomics 2007, 6, 377-381
    • (2007) Mol. Cell Proteomics , vol.6 , pp. 377-381
    • Zubarev, R.1    Mann, M.2
  • 55
    • 84857490219 scopus 로고    scopus 로고
    • Inhibition of platelet-derived growth factor receptor signaling regulates Oct4 and Nanog expression, cell shape, and mesenchymal stem cell potency
    • Ball, S. G.; Shuttleworth, A.; Kielty, C. M. Inhibition of platelet-derived growth factor receptor signaling regulates Oct4 and Nanog expression, cell shape, and mesenchymal stem cell potency Stem Cells 2012, 30, 548-560
    • (2012) Stem Cells , vol.30 , pp. 548-560
    • Ball, S.G.1    Shuttleworth, A.2    Kielty, C.M.3
  • 56
    • 2442507000 scopus 로고    scopus 로고
    • Affordable image analysis using NIH Image/ImageJ
    • Girish, V.; Vijayalakshmi, A. Affordable image analysis using NIH Image/ImageJ Indian J Cancer 2004, 41, 47
    • (2004) Indian J Cancer , vol.41 , pp. 47
    • Girish, V.1    Vijayalakshmi, A.2
  • 58
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
    • Huang, D. W.; Sherman, B. T.; Lempicki, R. A. Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists Nucleic Acids Res. 2009, 37, 1-13
    • (2009) Nucleic Acids Res. , vol.37 , pp. 1-13
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 59
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang, D. W.; Sherman, B. T.; Lempicki, R. A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources Nat. Protoc. 2009, 4, 44-57
    • (2009) Nat. Protoc. , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 60
    • 56449107474 scopus 로고    scopus 로고
    • BioVenn-A web application for the comparison and visualization of biological lists using area-proportional Venn diagrams
    • Hulsen, T.; de Vlieg, J.; Alkema, W. BioVenn-A web application for the comparison and visualization of biological lists using area-proportional Venn diagrams BMC Genomics 2008, 9, 488
    • (2008) BMC Genomics , vol.9 , pp. 488
    • Hulsen, T.1    De Vlieg, J.2    Alkema, W.3
  • 61
    • 37649009983 scopus 로고    scopus 로고
    • Generalized linear mixed models: A review and some extensions
    • Dean, C. B.; Nielsen, J. D. Generalized linear mixed models: A review and some extensions Lifetime Data Anal 2007, 13, 497-512
    • (2007) Lifetime Data Anal , vol.13 , pp. 497-512
    • Dean, C.B.1    Nielsen, J.D.2
  • 62
    • 77952360137 scopus 로고    scopus 로고
    • Revealing a core signaling regulatory mechanism for pluripotent stem cell survival and self-renewal by small molecules
    • Xu, Y.; Zhu, X.; Hahm, H. S.; Wei, W.; Hao, E.; Hayek, A.; Ding, S. Revealing a core signaling regulatory mechanism for pluripotent stem cell survival and self-renewal by small molecules Proc. Natl. Acad. Sci. U. S. A. 2010, 107, 8129-8134
    • (2010) Proc. Natl. Acad. Sci. U. S. A. , vol.107 , pp. 8129-8134
    • Xu, Y.1    Zhu, X.2    Hahm, H.S.3    Wei, W.4    Hao, E.5    Hayek, A.6    Ding, S.7
  • 63
    • 34548356772 scopus 로고    scopus 로고
    • An experimental correction for arginine-to-proline conversion artifacts in SILAC-based quantitative proteomics
    • Van Hoof, D.; Pinkse, M. W. H.; Oostwaard, D. W.-V.; Mummery, C. L.; Heck, A. J. R.; Krijgsveld, J. An experimental correction for arginine-to-proline conversion artifacts in SILAC-based quantitative proteomics Nat. Methods 2007, 4, 677-678
    • (2007) Nat. Methods , vol.4 , pp. 677-678
    • Van Hoof, D.1    Pinkse, M.W.H.2    Oostwaard, D.W.-V.3    Mummery, C.L.4    Heck, A.J.R.5    Krijgsveld, J.6
  • 64
    • 79952310958 scopus 로고    scopus 로고
    • A systematic approach to assess amino acid conversions in SILAC experiments
    • Marcilla, M.; Alpizar, A.; Paradela, A.; Albar, J. P. A systematic approach to assess amino acid conversions in SILAC experiments Talanta 2011, 84, 430-436
    • (2011) Talanta , vol.84 , pp. 430-436
    • Marcilla, M.1    Alpizar, A.2    Paradela, A.3    Albar, J.P.4
  • 65
    • 61449134247 scopus 로고    scopus 로고
    • A computational approach to correct arginine-to-proline conversion in quantitative proteomics
    • Park, S. K.; Liao, L.; Kim, J. Y.; Yates, J. R., 3rd A computational approach to correct arginine-to-proline conversion in quantitative proteomics Nat. Methods 2009, 6, 184-185
    • (2009) Nat. Methods , vol.6 , pp. 184-185
    • Park, S.K.1    Liao, L.2    Kim, J.Y.3    Yates Iii, J.R.4
  • 66
    • 1642314524 scopus 로고    scopus 로고
    • A novel proteomic screen for peptide-protein interactions
    • Schulze, W. X.; Mann, M. A novel proteomic screen for peptide-protein interactions J. Biol. Chem. 2004, 279, 10756-10764
    • (2004) J. Biol. Chem. , vol.279 , pp. 10756-10764
    • Schulze, W.X.1    Mann, M.2
  • 67
    • 77954695928 scopus 로고    scopus 로고
    • A genetic engineering solution to the "arginine conversion problem" in stable isotope labeling by amino acids in cell culture (SILAC)
    • Bicho, C. C.; de Lima Alves, F.; Chen, Z. A.; Rappsilber, J.; Sawin, K. E. A genetic engineering solution to the "arginine conversion problem" in stable isotope labeling by amino acids in cell culture (SILAC) Mol. Cell Proteomics 2010, 9, 1567-1577
    • (2010) Mol. Cell Proteomics , vol.9 , pp. 1567-1577
    • Bicho, C.C.1    De Lima Alves, F.2    Chen, Z.A.3    Rappsilber, J.4    Sawin, K.E.5
  • 68
    • 34247396011 scopus 로고    scopus 로고
    • A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC)
    • Ong, S.-E.; Mann, M. A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC) Nat Protoc 2006, 1, 2650-2660
    • (2006) Nat Protoc , vol.1 , pp. 2650-2660
    • Ong, S.-E.1    Mann, M.2
  • 69
    • 33846184752 scopus 로고    scopus 로고
    • Nanog and transcriptional networks in embryonic stem cell pluripotency
    • Pan, G.; Thomson, J. A. Nanog and transcriptional networks in embryonic stem cell pluripotency Cell Res. 2007, 17, 42-49
    • (2007) Cell Res. , vol.17 , pp. 42-49
    • Pan, G.1    Thomson, J.A.2
  • 70
    • 33847634889 scopus 로고    scopus 로고
    • The TRA-1-60 and TRA-1-81 human pluripotent stem cell markers are expressed on podocalyxin in embryonal carcinoma
    • Schopperle, W. M.; DeWolf, W. C. The TRA-1-60 and TRA-1-81 human pluripotent stem cell markers are expressed on podocalyxin in embryonal carcinoma STEM CELLS 2007, 25, 723-730
    • (2007) STEM CELLS , vol.25 , pp. 723-730
    • Schopperle, W.M.1    Dewolf, W.C.2
  • 73
    • 84856057191 scopus 로고    scopus 로고
    • Dedifferentiation of foetal CNS stem cells to mesendoderm-like cells through an EMT process
    • Ber, S.; Lee, C.; Voiculescu, O.; Surani, M. A. Dedifferentiation of foetal CNS stem cells to mesendoderm-like cells through an EMT process PLoS ONE 2012, 7, e30759
    • (2012) PLoS ONE , vol.7 , pp. 30759
    • Ber, S.1    Lee, C.2    Voiculescu, O.3    Surani, M.A.4
  • 77
    • 0343283809 scopus 로고
    • Expression of the alpha subunit of human chorionic gonadotropin is specifically correlated with tumorigenic expression in human cell hybrids
    • Stanbridge, E. J.; Rosen, S. W.; Sussman, H. H. Expression of the alpha subunit of human chorionic gonadotropin is specifically correlated with tumorigenic expression in human cell hybrids Proc. Natl. Acad. Sci. U. S. A. 1982, 79, 6242-6245
    • (1982) Proc. Natl. Acad. Sci. U. S. A. , vol.79 , pp. 6242-6245
    • Stanbridge, E.J.1    Rosen, S.W.2    Sussman, H.H.3
  • 80
    • 44049088472 scopus 로고    scopus 로고
    • Requirement of Nanog dimerization for stem cell self-renewal and pluripotency
    • Wang, J.; Levasseur, D. N.; Orkin, S. H. Requirement of Nanog dimerization for stem cell self-renewal and pluripotency Proc. Natl. Acad. Sci. U. S. A. 2008, 105, 6326-6331
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , pp. 6326-6331
    • Wang, J.1    Levasseur, D.N.2    Orkin, S.H.3
  • 82
    • 24044513966 scopus 로고    scopus 로고
    • Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations
    • Elias, J. E.; Haas, W.; Faherty, B. K.; Gygi, S. P. Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations Nat. Methods 2005, 2, 667-675
    • (2005) Nat. Methods , vol.2 , pp. 667-675
    • Elias, J.E.1    Haas, W.2    Faherty, B.K.3    Gygi, S.P.4
  • 83
    • 77956399506 scopus 로고    scopus 로고
    • Matrigel: A complex protein mixture required for optimal growth of cell culture
    • Hughes, C. S.; Postovit, L. M.; Lajoie, G. A. Matrigel: A complex protein mixture required for optimal growth of cell culture Proteomics 2010, 10, 1886-1890
    • (2010) Proteomics , vol.10 , pp. 1886-1890
    • Hughes, C.S.1    Postovit, L.M.2    Lajoie, G.A.3
  • 85
    • 58149378334 scopus 로고    scopus 로고
    • Genome-wide analysis reveals Sall4 to be a major regulator of pluripotency in murine-embryonic stem cells
    • Yang, J.; Chai, L.; Fowles, T. C.; Alipio, Z.; Xu, D.; Fink, L. M.; Ward, D. C.; Ma, Y. Genome-wide analysis reveals Sall4 to be a major regulator of pluripotency in murine-embryonic stem cells Proc. Natl. Acad. Sci. U. S. A. 2008, 105, 19756-19761
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , pp. 19756-19761
    • Yang, J.1    Chai, L.2    Fowles, T.C.3    Alipio, Z.4    Xu, D.5    Fink, L.M.6    Ward, D.C.7    Ma, Y.8
  • 87
    • 35548946632 scopus 로고    scopus 로고
    • A UTF1-based selection system for stable homogeneously pluripotent human embryonic stem cell cultures
    • Tan, S. M.; Wang, S. T.; Hentze, H.; Dröge, P. A UTF1-based selection system for stable homogeneously pluripotent human embryonic stem cell cultures Nucleic Acids Res. 2007, 35, e118
    • (2007) Nucleic Acids Res. , vol.35 , pp. 118
    • Tan, S.M.1    Wang, S.T.2    Hentze, H.3    Dröge, P.4
  • 88
    • 0032797827 scopus 로고    scopus 로고
    • The gene for the embryonic stem cell coactivator UTF1 carries a regulatory element which selectively interacts with a complex composed of Oct-3/4 and Sox-2
    • Nishimoto, M.; Fukushima, A.; Okuda, A.; Muramatsu, M. The gene for the embryonic stem cell coactivator UTF1 carries a regulatory element which selectively interacts with a complex composed of Oct-3/4 and Sox-2 Mol. Cell. Biol. 1999, 19, 5453-5465
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 5453-5465
    • Nishimoto, M.1    Fukushima, A.2    Okuda, A.3    Muramatsu, M.4
  • 95
  • 97
    • 39149130361 scopus 로고    scopus 로고
    • Stem cells, the molecular circuitry of pluripotency and nuclear reprogramming
    • Jaenisch, R.; Young, R. Stem cells, the molecular circuitry of pluripotency and nuclear reprogramming Cell 2008, 132, 567-582
    • (2008) Cell , vol.132 , pp. 567-582
    • Jaenisch, R.1    Young, R.2
  • 98
    • 84874762979 scopus 로고    scopus 로고
    • The Proteomics Identifications (PRIDE) database and associated tools: Status in 2013
    • Vizcaino, J. A. The Proteomics Identifications (PRIDE) database and associated tools: status in 2013 Nucleic Acids Res. 2013, 41(D1):D1063-9
    • (2013) Nucleic Acids Res.
    • Vizcaino, J.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.