Identification of spectral modifications occurring during reprogramming of somatic cells

PLoS ONE

Volumn 7, Issue 4, 2012, Pages

  Sandt, Christophe ^a   Féraud, Olivier ^b   Oudrhiri, Noufissa ^b,c   Bonnet, Marie Laure ^b,d   Meunier, Marie Claude ^b,d   Valogne, Yannick ^b   Bertrand, Angelina ^b,d   Raphaël, Martine ^c   Griscelli, Frank ^b,e   Turhan, Ali G ^b,d   Dumas, Paul ^a   Bennaceur Griscelli, Annelise ^b,c  

^a SYNCHROTRON SOLEIL   (France)

^b Centre National de la Recherche Scientifique   (France)

^c BICÊTRE HOSPITAL   (France)

^d UNIVERSITÉ DE POITIERS   (France)

^e UNIVERSITÉ PARIS DESCARTES   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTICAL PARAMETERS; ANIMAL CELL; ARTICLE; CELL COMPOSITION; CELL DIFFERENTIATION; CELL POPULATION; CONTROLLED STUDY; EMBRYO; EMBRYONIC STEM CELL; HUMAN; HUMAN CELL; INFRARED SPECTROSCOPY; MOUSE; NONHUMAN; NUCLEAR REPROGRAMMING; PLURIPOTENT STEM CELL; SENSITIVITY AND SPECIFICITY; SOMATIC CELL; SPECTRAL MODIFICATION; ANIMAL; CYTOLOGY; GENETICS; METABOLISM; PHYSIOLOGY;

ANIMALS; EMBRYONIC STEM CELLS; HUMANS; INDUCED PLURIPOTENT STEM CELLS; MICE; NUCLEAR REPROGRAMMING; SPECTROSCOPY, FOURIER TRANSFORM INFRARED;

EID: 84859707057     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0030743     Document Type: Article

References (23)

1. Thomson JA, Itskovitz-Eldor J, Shapiro SS, Waknitz MA, Swiergiel JJ, et al. (1998) Embryonic stem cell lines derived from human blastocysts. Science 282: 1145-7.
2. Takahashi K, Tanabe K, Ohnuki M, Narita M, Ichisaka T, et al. (2007) Induction of pluripotent stem cells from adult human fibroblasts by defined factors. Cell 131: 861-72.
3. Yu J, Vodyanik MA, Smuga-Otto K, Antosiewicz-Bourget J, Frane JL, et al. (2007) Induced pluripotent stem cell lines derived from human somatic cells. Science 318: 1917-20.
4. Chin MH, Mason MJ, Xie W, Volinia S, Singer M, et al. (2009) Induced pluripotent stem cells and embryonic stem cells are distinguished by gene expression signatures. Cell Stem Cell 5: 111-23.
5. Marchetto MC, Yeo GW, Kainohana O, Marsala M, Gage FH, et al. (2009) Transcriptional signature and memory retention of human-induced pluripotent stem cells. PLoS One 4: e7076.
6. Hu Q, Friedrich AM, Johnson LV, Clegg DO, (2010) Memory in induced pluripotent stem cells: reprogrammed human retinal-pigmented epithelial cells show tendency for spontaneous redifferentiation. Stem Cells 28: 1981-91.
7. Kim K, Doi A, Wen B, Ng K, Zhao R, et al. (2010) Epigenetic memory in induced pluripotent stem cells. Nature 467: 285-90.
8. Dumas P, Sockalingum GD, Sulé-Suso J, (2007) Adding synchrotron radiation to infrared microspectroscopy: what's new in biomedical applications? Trends Biotechnol 25: 40-4.
9. Giuliani M, Oudrhiri N, Noman ZM, Vernochet A, Chouaib S, et al. (2011) Human mesenchymal stem cells derived from induced pluripotent stem cells down-regulate NK-cell cytolytic machinery. Blood 118: 3254-62.
10. German MJ, Pollock HM, Zhao B, Tobin MJ, Hammiche A, et al. (2006) Characterization of putative stem cell populations in the cornea using synchrotron infrared microspectroscopy. Invest Ophthalmol Vis Sci 47: 2417-21.
11. Krafft C, Salzer R, Seitz S, Ern C, Schieker M, (2007) Differentiation of individual human mesenchymal stem cells probed by FTIR microscopic imaging. Analyst 132: 647-53.
12. Walsh MJ, Fellous TG, Hammiche A, Lin WR, Fullwood NJ, et al. (2008) Fourier transform infrared microspectroscopy identifies symmetric PO(2) (-) modifications as a marker of the putative stem cell region of human intestinal crypts. Stem Cells 26: 108-18.
13. Ami D, Neri T, Natalello A, Mereghetti P, Doglia SM, et al. (2008) Embryonic stem cell differentiation studied by FT-IR spectroscopy. Biochim Biophys Acta 1783: 98-106.
14. Heraud P, Ng ES, Caine S, Yu QC, Hirst C, et al. (2010) Fourier transform infrared microspectroscopy identifies early lineage commitment in differentiating human embryonic stem cells. Stem Cell Res 4: 140-7.
15. Pijanka JK, Kumar D, Dale T, Yousef I, Parkes G, et al. (2010) Vibrational spectroscopy differentiates between multipotent and pluripotent stem cells. Analyst 135: 3126-32.
16. Smith ZD, Nachman I, Regev A, Meissner A, (2010) Dynamic single-cell imaging of direct reprogramming reveals an early specifying event. Nat Biotechnol 28: 521-6.
17. Bieberich E, (2011) Ceramide in stem cell differentiation and embryo development: novel functions of a topological cell-signaling lipid and the concept of ceramide compartments. J Lipids 2011: 610306.
18. Lee MY, Ryu JM, Lee SH, Park JH, Han HJ, (2010) Lipid rafts play an important role for maintenance of embryonic stem cell self-renewal. J Lipid Res 51: 2082-9.
19. Salli U, Fox TE, Carkaci-Salli N, Sharma A, Robertson GP, et al. (2009) Propagation of undifferentiated human embryonic stem cells with nano-liposomal ceramide. Stem Cells Dev 18: 55-65.
20. Lefort N, Feyeux M, Bas C, Féraud O, Bennaceur-Griscelli A, et al. (2008) Human embryonic stem cells reveal recurrent genomic instability at 20q11.21. Nat Biotechnol 26: 1364-6.
21. Mourant JR, Yamada YR, Carpenter S, Dominique LR, Freyer JP, (2003) FTIR spectroscopy demonstrates biochemical differences in mammalian cell cultures at different growth stages. Biophys J 85: 1938-47.
22. Pacifico A, Chiriboga LA, Lasch P, Diem M, (2003) Infrared spectroscopy of cultured cells II. Spectra of exponentially growing, serum-deprived and confluent cells. Vib Spec 32: 107-115.
23. Boydston-White S, Romeo M, Chernenko T, Regina A, Miljković M, et al. (2006) Cell-cycle-dependent variations in FTIR micro-spectra of single proliferating HeLa cells: principal component and artificial neural network analysis. Biochim Biophys Acta 1758: 908-14.