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Volumn 13, Issue 4, 2013, Pages 551-558

Of contigs and quagmires: Next-generation sequencing pitfalls associated with transcriptomic studies

Author keywords

454; Genomics; Illumina; Next generation sequencing; RNA seq; Transcriptomics

Indexed keywords

TRANSCRIPTOME;

EID: 84879413303     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/1755-0998.12107     Document Type: Article
Times cited : (21)

References (70)
  • 1
    • 79951867889 scopus 로고    scopus 로고
    • Effective teaching of science in an undergraduate course; knowledge, discipline and dedication yield scientists
    • World Conference on Learning, Teaching and Administration Papers
    • Amleh A, Abou El-Soud M, Kamel S (2010) Effective teaching of science in an undergraduate course; knowledge, discipline and dedication yield scientists. Procedia-Social and Behavioral Sciences, World Conference on Learning, Teaching and Administration Papers, 9, 890-902.
    • (2010) Procedia-Social and Behavioral Sciences , vol.9 , pp. 890-902
    • Amleh, A.1    Abou El-Soud, M.2    Kamel, S.3
  • 2
    • 84858739096 scopus 로고    scopus 로고
    • Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II
    • Archer J, Baillie G, Watson SJ et al. (2012) Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II. BMC Bioinformatics, 13, 47.
    • (2012) BMC Bioinformatics , vol.13 , pp. 47
    • Archer, J.1    Baillie, G.2    Watson, S.J.3
  • 3
    • 84863393432 scopus 로고    scopus 로고
    • Coverage-based consensus calling (Cbcc) of short sequence reads and comparison of Cbcc results to identify SNPs in chickpea (Cicer Arietinum; Fabaceae), a crop species without a reference genome
    • Azam S, Thakur V, Ruperao P et al. (2012) Coverage-based consensus calling (Cbcc) of short sequence reads and comparison of Cbcc results to identify SNPs in chickpea (Cicer Arietinum; Fabaceae), a crop species without a reference genome. American Journal of Botany, 99, 186-192.
    • (2012) American Journal of Botany , vol.99 , pp. 186-192
    • Azam, S.1    Thakur, V.2    Ruperao, P.3
  • 4
    • 77954975104 scopus 로고    scopus 로고
    • Next-generation sequencing: adjusting to data overload
    • Baker M (2010) Next-generation sequencing: adjusting to data overload. Nature Methods, 7, 495-499.
    • (2010) Nature Methods , vol.7 , pp. 495-499
    • Baker, M.1
  • 5
    • 84860442894 scopus 로고    scopus 로고
    • Effect of Cry1Ab protein on Rhizobacterial communities of Bt-maize over a four-year cultivation period
    • Barriuso J, Valverde JR, Mellado RP (2012) Effect of Cry1Ab protein on Rhizobacterial communities of Bt-maize over a four-year cultivation period. PLoS One, 7, e35481.
    • (2012) PLoS One , vol.7
    • Barriuso, J.1    Valverde, J.R.2    Mellado, R.P.3
  • 6
    • 84863394534 scopus 로고    scopus 로고
    • High throughput sequencing of the Parhyale hawaiensis mRNAs and microRNAs to aid comparative developmental studies
    • Blythe MJ, Malla S, Everall R et al. (2012) High throughput sequencing of the Parhyale hawaiensis mRNAs and microRNAs to aid comparative developmental studies. PLoS One, 7, e33784.
    • (2012) PLoS One , vol.7
    • Blythe, M.J.1    Malla, S.2    Everall, R.3
  • 7
    • 84860483735 scopus 로고    scopus 로고
    • Next-generation sequencing reveals significant bacterial diversity of botrytized wine
    • Bokulich NA, Joseph CML, Allen G, Benson AK, Mills DA (2012) Next-generation sequencing reveals significant bacterial diversity of botrytized wine. PLoS One, 7, e36357.
    • (2012) PLoS One , vol.7
    • Bokulich, N.A.1    Joseph, C.M.L.2    Allen, G.3    Benson, A.K.4    Mills, D.A.5
  • 8
    • 34247878618 scopus 로고    scopus 로고
    • The aims of science laboratory courses: a survey of students, graduates and practising scientists
    • Boud DJ, Dunn J, Kennedy T, Thorley R (2007) The aims of science laboratory courses: a survey of students, graduates and practising scientists. European Journal of Science Education, 2, 415-428.
    • (2007) European Journal of Science Education , vol.2 , pp. 415-428
    • Boud, D.J.1    Dunn, J.2    Kennedy, T.3    Thorley, R.4
  • 9
    • 84856712298 scopus 로고    scopus 로고
    • Pyrosequencing of prey DNA in reptile faeces: analysis of earthworm consumption by slow worms
    • Brown DS, Jarman SN, Symondson WOC (2012) Pyrosequencing of prey DNA in reptile faeces: analysis of earthworm consumption by slow worms. Molecular Ecology Resources, 12, 259-266.
    • (2012) Molecular Ecology Resources , vol.12 , pp. 259-266
    • Brown, D.S.1    Jarman, S.N.2    Symondson, W.O.C.3
  • 10
    • 77950946551 scopus 로고    scopus 로고
    • Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping
    • Buggs RJA, Chamala S, Wu W et al. (2010) Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping. Molecular Ecology, 19, 132-146.
    • (2010) Molecular Ecology , vol.19 , pp. 132-146
    • Buggs, R.J.A.1    Chamala, S.2    Wu, W.3
  • 11
    • 84863597153 scopus 로고    scopus 로고
    • Enrichment of genomic DNA for polymorphism detection in a non-model highly polyploid crop plant
    • Bundock PC, Casu RE, Henry RJ (2012) Enrichment of genomic DNA for polymorphism detection in a non-model highly polyploid crop plant. Plant Biotechnology Journal, 10, 657-667.
    • (2012) Plant Biotechnology Journal , vol.10 , pp. 657-667
    • Bundock, P.C.1    Casu, R.E.2    Henry, R.J.3
  • 12
    • 84856411877 scopus 로고    scopus 로고
    • Decoding cell lineage from acquired mutations using arbitrary deep sequencing
    • Carlson CA, Kas A, Kirkwood R et al. (2012) Decoding cell lineage from acquired mutations using arbitrary deep sequencing. Nature Methods, 9, 78-80.
    • (2012) Nature Methods , vol.9 , pp. 78-80
    • Carlson, C.A.1    Kas, A.2    Kirkwood, R.3
  • 13
    • 84857725402 scopus 로고    scopus 로고
    • Exploiting the mutanome for tumor vaccination
    • Castle JC, Kreiter S, Diekmann J et al. (2012) Exploiting the mutanome for tumor vaccination. Cancer Research, 72, 1081-1091.
    • (2012) Cancer Research , vol.72 , pp. 1081-1091
    • Castle, J.C.1    Kreiter, S.2    Diekmann, J.3
  • 14
    • 84859576058 scopus 로고    scopus 로고
    • De novo characterization of the Timema cristinae transcriptome facilitates marker discovery and inference of genetic divergence
    • Comeault AA, Sommers M, Schwander T et al. (2012) De novo characterization of the Timema cristinae transcriptome facilitates marker discovery and inference of genetic divergence. Molecular Ecology Resources, 12, 549-561.
    • (2012) Molecular Ecology Resources , vol.12 , pp. 549-561
    • Comeault, A.A.1    Sommers, M.2    Schwander, T.3
  • 15
    • 84858174122 scopus 로고    scopus 로고
    • Genetic divergence between freshwater and marine morphs of alewife (Alosa pseudoharengus): a 'next-generation' sequencing analysis
    • Czesny S, Epifanio J, Michalak P (2012) Genetic divergence between freshwater and marine morphs of alewife (Alosa pseudoharengus): a 'next-generation' sequencing analysis. PLoS One, 7, e31803.
    • (2012) PLoS One , vol.7
    • Czesny, S.1    Epifanio, J.2    Michalak, P.3
  • 17
    • 84863421330 scopus 로고    scopus 로고
    • Whole-genome sequencing and genetic variant analysis of a quarter horse mare
    • Doan R, Cohen ND, Sawyer J et al. (2012) Whole-genome sequencing and genetic variant analysis of a quarter horse mare. BMC Genomics, 13, 78.
    • (2012) BMC Genomics , vol.13 , pp. 78
    • Doan, R.1    Cohen, N.D.2    Sawyer, J.3
  • 19
    • 84862313166 scopus 로고    scopus 로고
    • The effects of contig length and depth on the estimation of SNP frequencies, and the relative abundance of SNPs in protein-coding and non-coding transcripts
    • Eo SH, DeWoody JA (2012) The effects of contig length and depth on the estimation of SNP frequencies, and the relative abundance of SNPs in protein-coding and non-coding transcripts. BMC Genomics, 13, 259.
    • (2012) BMC Genomics , vol.13 , pp. 259
    • Eo, S.H.1    DeWoody, J.A.2
  • 20
    • 84655169743 scopus 로고    scopus 로고
    • Comparative transcriptomics and gene expression in larval tiger salamander (Ambystoma tigrinum) gill and lung tissues as revealed by pyrosequencing
    • Eo SH, Doyle JM, Hale MC, Marra NJ, Ruhl JD, DeWoody JA (2012) Comparative transcriptomics and gene expression in larval tiger salamander (Ambystoma tigrinum) gill and lung tissues as revealed by pyrosequencing. Gene, 492, 329-338.
    • (2012) Gene , vol.492 , pp. 329-338
    • Eo, S.H.1    Doyle, J.M.2    Hale, M.C.3    Marra, N.J.4    Ruhl, J.D.5    DeWoody, J.A.6
  • 21
    • 84859063337 scopus 로고    scopus 로고
    • De novo sequencing and characterization of Picrorhiza kurrooa transcriptome at two temperatures showed major transcriptome adjustments
    • Gahlan P, Singh HR, Shankar R et al. (2012) De novo sequencing and characterization of Picrorhiza kurrooa transcriptome at two temperatures showed major transcriptome adjustments. BMC Genomics, 13, 126.
    • (2012) BMC Genomics , vol.13 , pp. 126
    • Gahlan, P.1    Singh, H.R.2    Shankar, R.3
  • 22
    • 84864437050 scopus 로고    scopus 로고
    • Next-generation sequencing fails to identify human virus sequences in cutaneous squamous cell carcinoma
    • Ganzenmueller T, Yakushko Y, Kluba J et al. (2012) Next-generation sequencing fails to identify human virus sequences in cutaneous squamous cell carcinoma. International Journal of Cancer, 131, E1173-E1179.
    • (2012) International Journal of Cancer , vol.131
    • Ganzenmueller, T.1    Yakushko, Y.2    Kluba, J.3
  • 23
    • 84858710282 scopus 로고    scopus 로고
    • The complete mitogenome of Cylindrus obtusus (Helicidae, Ariantinae) using Illumina next generation sequencing
    • Groenenberg DSJ, Pirovano W, Gittenberger E, Schilthuizen M (2012) The complete mitogenome of Cylindrus obtusus (Helicidae, Ariantinae) using Illumina next generation sequencing. BMC Genomics, 13, 114.
    • (2012) BMC Genomics , vol.13 , pp. 114
    • Groenenberg, D.S.J.1    Pirovano, W.2    Gittenberger, E.3    Schilthuizen, M.4
  • 24
    • 35548993280 scopus 로고    scopus 로고
    • Basal clades and molecular systematics of heteromyid rodents
    • Hafner JC, Light JE, Hafner DJ et al. (2007) Basal clades and molecular systematics of heteromyid rodents. Journal of Mammalogy, 88, 1129-1145.
    • (2007) Journal of Mammalogy , vol.88 , pp. 1129-1145
    • Hafner, J.C.1    Light, J.E.2    Hafner, D.J.3
  • 25
    • 66349087005 scopus 로고    scopus 로고
    • Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery
    • Hale MC, McCormick CR, Jackson JR, DeWoody JA (2009) Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery. BMC Genomics, 10, 203.
    • (2009) BMC Genomics , vol.10 , pp. 203
    • Hale, M.C.1    McCormick, C.R.2    Jackson, J.R.3    DeWoody, J.A.4
  • 26
    • 77953475815 scopus 로고    scopus 로고
    • Discovery and evaluation of candidate sex-determining genes and xenobiotics in the gonads of lake sturgeon (Acipenser fulvescens)
    • Hale MC, Jackson JR, DeWoody JA (2010) Discovery and evaluation of candidate sex-determining genes and xenobiotics in the gonads of lake sturgeon (Acipenser fulvescens). Genetica, 138, 745-756.
    • (2010) Genetica , vol.138 , pp. 745-756
    • Hale, M.C.1    Jackson, J.R.2    DeWoody, J.A.3
  • 27
    • 84859982570 scopus 로고    scopus 로고
    • Going solo: discovery of the first parthenogenetic Gordiid (Nematomorpha: Gordiida)
    • Hanelt B, Bolek MG, Schmidt-Rhaesa A (2012) Going solo: discovery of the first parthenogenetic Gordiid (Nematomorpha: Gordiida). PLoS One, 7, e34472.
    • (2012) PLoS One , vol.7
    • Hanelt, B.1    Bolek, M.G.2    Schmidt-Rhaesa, A.3
  • 28
    • 84863587776 scopus 로고    scopus 로고
    • High-throughput and parallel SNP discovery in selected candidate genes in Eucalyptus camaldulensis using Illumina NGS platform
    • Hendre PS, Kamalakannan R, Varghese M (2012) High-throughput and parallel SNP discovery in selected candidate genes in Eucalyptus camaldulensis using Illumina NGS platform. Plant Biotechnology Journal, 10, 646-656.
    • (2012) Plant Biotechnology Journal , vol.10 , pp. 646-656
    • Hendre, P.S.1    Kamalakannan, R.2    Varghese, M.3
  • 29
    • 84859619825 scopus 로고    scopus 로고
    • Plant species richness belowground: higher richness and new patterns revealed by next-generation sequencing
    • Hiiesalu I, Opik M, Metsis M et al. (2012) Plant species richness belowground: higher richness and new patterns revealed by next-generation sequencing. Molecular Ecology, 21, 2004-2016.
    • (2012) Molecular Ecology , vol.21 , pp. 2004-2016
    • Hiiesalu, I.1    Opik, M.2    Metsis, M.3
  • 31
    • 84856467364 scopus 로고    scopus 로고
    • Identification of putative miRNAs from the deep-branching unicellular flagellates
    • Huang PJ, Lin WC, Chen SC et al. (2012) Identification of putative miRNAs from the deep-branching unicellular flagellates. Genomics, 99, 101-107.
    • (2012) Genomics , vol.99 , pp. 101-107
    • Huang, P.J.1    Lin, W.C.2    Chen, S.C.3
  • 32
    • 84863244338 scopus 로고    scopus 로고
    • Genome features of "Dark-Fly", a Drosophila line reared long-term in a dark environment
    • Izutsu M, Zhou J, Sugiyama Y et al. (2012) Genome features of "Dark-Fly", a Drosophila line reared long-term in a dark environment. PLoS One, 7, e33288.
    • (2012) PLoS One , vol.7
    • Izutsu, M.1    Zhou, J.2    Sugiyama, Y.3
  • 33
    • 84863338497 scopus 로고    scopus 로고
    • Ultra-barcoding in Cacao (Theobroma Spp.; Malvaceae) using whole chloroplast genomes and nuclear ribosomal DNA
    • Kane N, Sveinsson S, Dempewolf H et al. (2012) Ultra-barcoding in Cacao (Theobroma Spp.; Malvaceae) using whole chloroplast genomes and nuclear ribosomal DNA. American Journal of Botany, 99, 320-329.
    • (2012) American Journal of Botany , vol.99 , pp. 320-329
    • Kane, N.1    Sveinsson, S.2    Dempewolf, H.3
  • 34
    • 84865476327 scopus 로고    scopus 로고
    • Common misperceptions in molecular ecology: echoes of the modern synthesis
    • Karl SA, Toonen RJ, Grant WS, Bowen BW (2012) Common misperceptions in molecular ecology: echoes of the modern synthesis. Molecular Ecology, 21, 4171-4189.
    • (2012) Molecular Ecology , vol.21 , pp. 4171-4189
    • Karl, S.A.1    Toonen, R.J.2    Grant, W.S.3    Bowen, B.W.4
  • 35
    • 84860994450 scopus 로고    scopus 로고
    • Genomic sequencing and comparative analysis of Epstein-Barr virus genome isolated from primary nasopharyngeal carcinoma biopsy
    • Kwok H, Tong AHY, Lin CH et al. (2012) Genomic sequencing and comparative analysis of Epstein-Barr virus genome isolated from primary nasopharyngeal carcinoma biopsy. PLoS One, 7, e36939.
    • (2012) PLoS One , vol.7
    • Kwok, H.1    Tong, A.H.Y.2    Lin, C.H.3
  • 36
    • 84863596169 scopus 로고    scopus 로고
    • Single nucleotide polymorphism discovery from wheat next-generation sequence data
    • Lai KT, Duran C, Berkman PJ et al. (2012) Single nucleotide polymorphism discovery from wheat next-generation sequence data. Plant Biotechnology Journal, 10, 743-749.
    • (2012) Plant Biotechnology Journal , vol.10 , pp. 743-749
    • Lai, K.T.1    Duran, C.2    Berkman, P.J.3
  • 38
    • 84855827864 scopus 로고    scopus 로고
    • Isoform diversity and regulation in peripheral and central neurons revealed through RNA-Seq
    • Lerch JK, Kuo F, Motti D et al. (2012) Isoform diversity and regulation in peripheral and central neurons revealed through RNA-Seq. PLoS One, 7, e30417.
    • (2012) PLoS One , vol.7
    • Lerch, J.K.1    Kuo, F.2    Motti, D.3
  • 39
    • 84856229136 scopus 로고    scopus 로고
    • A comprehensive survey of maternal plasma miRNAs expression profiles using high-throughput sequencing
    • Li HL, Guo L, Wu Q et al. (2012a) A comprehensive survey of maternal plasma miRNAs expression profiles using high-throughput sequencing. Clinica Chimica Acta, 413, 568-576.
    • (2012) Clinica Chimica Acta , vol.413 , pp. 568-576
    • Li, H.L.1    Guo, L.2    Wu, Q.3
  • 40
    • 84862822882 scopus 로고    scopus 로고
    • Identification of long non-protein coding RNAs in chicken skeletal muscle using next generation sequencing
    • Li TT, Wang SY, Wu RM et al. (2012b) Identification of long non-protein coding RNAs in chicken skeletal muscle using next generation sequencing. Genomics, 99, 292-298.
    • (2012) Genomics , vol.99 , pp. 292-298
    • Li, T.T.1    Wang, S.Y.2    Wu, R.M.3
  • 41
    • 84861094252 scopus 로고    scopus 로고
    • Next-generation small RNA sequencing for microRNAs profiling in Apis mellifera: comparison between nurses and foragers
    • Liu F, Peng W, Li Z et al. (2012) Next-generation small RNA sequencing for microRNAs profiling in Apis mellifera: comparison between nurses and foragers. Insect Molecular Biology, 21, 297-303.
    • (2012) Insect Molecular Biology , vol.21 , pp. 297-303
    • Liu, F.1    Peng, W.2    Li, Z.3
  • 42
    • 84856770811 scopus 로고    scopus 로고
    • Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample
    • Luo CW, Tsementzi D, Kyrpides N, Read T, Konstantinidis KT (2012) Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample. PLoS One, 7, e30087.
    • (2012) PLoS One , vol.7
    • Luo, C.W.1    Tsementzi, D.2    Kyrpides, N.3    Read, T.4    Konstantinidis, K.T.5
  • 43
    • 84857837913 scopus 로고    scopus 로고
    • The transcriptome analysis of Strongyloides stercoralis L3i larvae reveals targets for intervention in a neglected disease
    • Marcilla A, Garg G, Bernal D et al. (2012) The transcriptome analysis of Strongyloides stercoralis L3i larvae reveals targets for intervention in a neglected disease. PloS Neglected Tropical Diseases, 6, e1513.
    • (2012) PloS Neglected Tropical Diseases , vol.6
    • Marcilla, A.1    Garg, G.2    Bernal, D.3
  • 44
    • 84870243299 scopus 로고    scopus 로고
    • A priori and a posteriori approaches for finding genes of evolutionary interest in non-model species: osmoregulatory genes in the kidney transcriptome of the desert rodent Dipodomys spectabilis (banner-tailed kangaroo rat)
    • Marra NJ, Eo SH, Hale MC, Waser PM, DeWoody JA (2012) A priori and a posteriori approaches for finding genes of evolutionary interest in non-model species: osmoregulatory genes in the kidney transcriptome of the desert rodent Dipodomys spectabilis (banner-tailed kangaroo rat). Comparative Biochemistry and Physiology Part D, 7, 328-339.
    • (2012) Comparative Biochemistry and Physiology Part D , vol.7 , pp. 328-339
    • Marra, N.J.1    Eo, S.H.2    Hale, M.C.3    Waser, P.M.4    DeWoody, J.A.5
  • 45
    • 84863725818 scopus 로고    scopus 로고
    • Tandem duplication of chromosomal segments is common in ovarian and breast cancer genomes
    • McBride DJ, Etemadmoghadam D, Cooke SL, et al. (2012) Tandem duplication of chromosomal segments is common in ovarian and breast cancer genomes. Journal of Pathology, 227, 446-455.
    • (2012) Journal of Pathology , vol.227 , pp. 446-455
    • McBride, D.J.1    Etemadmoghadam, D.2    Cooke, S.L.3
  • 47
    • 83655201166 scopus 로고    scopus 로고
    • Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences
    • McCormack JE, Maley JM, Hird SM et al. (2012b) Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences. Molecular Phylogenetics and Evolution, 62, 397-406.
    • (2012) Molecular Phylogenetics and Evolution , vol.62 , pp. 397-406
    • McCormack, J.E.1    Maley, J.M.2    Hird, S.M.3
  • 48
    • 84862491799 scopus 로고    scopus 로고
    • Murine gut microbiota is defined by host genetics and modulates variation of metabolic traits
    • McKnite AM, Perez-Munoz ME, Lu L et al. (2012) Murine gut microbiota is defined by host genetics and modulates variation of metabolic traits. PLoS One, 7, e39191.
    • (2012) PLoS One , vol.7
    • McKnite, A.M.1    Perez-Munoz, M.E.2    Lu, L.3
  • 49
    • 84879414655 scopus 로고    scopus 로고
    • A hybrid next-generation transcript sequencing-based approach to identify allelic and homeolog-specific single nucleotide polymorphisms in allotetraploid white clover
    • doi: 10.1186/1471-2164-14-100.
    • Nagy I, Barth S, Mehenni-Ciz J, Abberton MT, Milbourne D (2013) A hybrid next-generation transcript sequencing-based approach to identify allelic and homeolog-specific single nucleotide polymorphisms in allotetraploid white clover. BMC Genomics, 14, 100. doi: 10.1186/1471-2164-14-100.
    • (2013) BMC Genomics , vol.14 , pp. 100
    • Nagy, I.1    Barth, S.2    Mehenni-Ciz, J.3    Abberton, M.T.4    Milbourne, D.5
  • 50
    • 84858003171 scopus 로고    scopus 로고
    • The bacterial community associated with the marine polychaete Ophelina sp.1 (Annelida: Opheliidae) is altered by copper and zinc contamination in sediments
    • Neave MJ, Streten-Joyce C, Glasby CJ et al. (2012) The bacterial community associated with the marine polychaete Ophelina sp.1 (Annelida: Opheliidae) is altered by copper and zinc contamination in sediments. Microbial Ecology, 63, 639-650.
    • (2012) Microbial Ecology , vol.63 , pp. 639-650
    • Neave, M.J.1    Streten-Joyce, C.2    Glasby, C.J.3
  • 51
    • 84855282079 scopus 로고    scopus 로고
    • Application of high-throughput sequencing to measure the performance of commonly used selective cultivation methods for the foodborne pathogen Campylobacter
    • Oakley BB, Morales CA, Line JE, Seal BS, Hiett KL (2012) Application of high-throughput sequencing to measure the performance of commonly used selective cultivation methods for the foodborne pathogen Campylobacter. Fems Microbiology Ecology, 79, 327-336.
    • (2012) Fems Microbiology Ecology , vol.79 , pp. 327-336
    • Oakley, B.B.1    Morales, C.A.2    Line, J.E.3    Seal, B.S.4    Hiett, K.L.5
  • 52
    • 84872864542 scopus 로고    scopus 로고
    • Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salamander (Ambystoma tigrinum) species complex
    • O'Neill EM, Schwartz R, Bullock TC et al. (2012) Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salamander (Ambystoma tigrinum) species complex. Molecular Ecology, 22, 111-129.
    • (2012) Molecular Ecology , vol.22 , pp. 111-129
    • O'Neill, E.M.1    Schwartz, R.2    Bullock, T.C.3
  • 53
    • 84862009871 scopus 로고    scopus 로고
    • Genome-wide association genetics of an adaptive trait in lodgepole pine
    • Parchman TL, Gompert Z, Mudge J et al. (2012) Genome-wide association genetics of an adaptive trait in lodgepole pine. Molecular Ecology, 21, 2991-3005.
    • (2012) Molecular Ecology , vol.21 , pp. 2991-3005
    • Parchman, T.L.1    Gompert, Z.2    Mudge, J.3
  • 54
    • 84861840955 scopus 로고    scopus 로고
    • Systematic analysis and functional annotation of variations in the genome of an Indian individual
    • Patowary A, Purkanti R, Singh M et al. (2012) Systematic analysis and functional annotation of variations in the genome of an Indian individual. Human Mutation, 33, 1133-1140.
    • (2012) Human Mutation , vol.33 , pp. 1133-1140
    • Patowary, A.1    Purkanti, R.2    Singh, M.3
  • 55
    • 84861338860 scopus 로고    scopus 로고
    • Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing
    • Pelaez P, Trejo MS, Iniguez LP et al. (2012) Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing. BMC Genomics, 13, 83.
    • (2012) BMC Genomics , vol.13 , pp. 83
    • Pelaez, P.1    Trejo, M.S.2    Iniguez, L.P.3
  • 56
    • 84859170563 scopus 로고    scopus 로고
    • Next-generation phylogeography: a targeted approach for multilocus sequencing of non-model organisms
    • Puritz JB, Addison JA, Toonen RJ (2012) Next-generation phylogeography: a targeted approach for multilocus sequencing of non-model organisms. PLoS One, 7, e34241.
    • (2012) PLoS One , vol.7
    • Puritz, J.B.1    Addison, J.A.2    Toonen, R.J.3
  • 57
    • 84859794057 scopus 로고    scopus 로고
    • Development of TILLING by sequencing platform towards enhanced leaf yield in tobacco
    • Reddy TV, Dwivedi S, Sharma NK (2012) Development of TILLING by sequencing platform towards enhanced leaf yield in tobacco. Industrial Crops and Products, 40, 324-335.
    • (2012) Industrial Crops and Products , vol.40 , pp. 324-335
    • Reddy, T.V.1    Dwivedi, S.2    Sharma, N.K.3
  • 58
    • 84857669365 scopus 로고    scopus 로고
    • Prey preference of snow leopard (Panthera uncia) in South Gobi, Mongolia
    • Shehzad W, McCarthy TM, Pompanon F et al. (2012) Prey preference of snow leopard (Panthera uncia) in South Gobi, Mongolia. PLoS One, 7, e32104.
    • (2012) PLoS One , vol.7
    • Shehzad, W.1    McCarthy, T.M.2    Pompanon, F.3
  • 59
    • 81855194113 scopus 로고    scopus 로고
    • Identification of transcriptome SNPs between Xiphophorus lines and species for assessing allele specific gene expression within F-1 interspecies hybrids
    • Shen YJ, Catchen J, Garcia T et al. (2012) Identification of transcriptome SNPs between Xiphophorus lines and species for assessing allele specific gene expression within F-1 interspecies hybrids. Comparative Biochemistry and Physiology Part C-Toxicology & Pharmacology, 155, 102-108.
    • (2012) Comparative Biochemistry and Physiology Part C-Toxicology & Pharmacology , vol.155 , pp. 102-108
    • Shen, Y.J.1    Catchen, J.2    Garcia, T.3
  • 60
    • 84859295400 scopus 로고    scopus 로고
    • A key role for EZH2 and associated genes in mouse and human adult T-cell acute leukemia
    • Simon C, Chagraoui J, Krosl J et al. (2012) A key role for EZH2 and associated genes in mouse and human adult T-cell acute leukemia. Genes & Development, 26, 651-656.
    • (2012) Genes & Development , vol.26 , pp. 651-656
    • Simon, C.1    Chagraoui, J.2    Krosl, J.3
  • 61
    • 84864284594 scopus 로고    scopus 로고
    • Variations in the exome of the LNCaP prostate cancer cell line
    • Spans L, Atak ZK, Van Nieuwerburgh F et al. (2012) Variations in the exome of the LNCaP prostate cancer cell line. Prostate, 72, 1317-1327.
    • (2012) Prostate , vol.72 , pp. 1317-1327
    • Spans, L.1    Atak, Z.K.2    Van Nieuwerburgh, F.3
  • 62
    • 84860751168 scopus 로고    scopus 로고
    • Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA
    • Squires JE, Patel HR, Nousch M et al. (2012) Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA. Nucleic Acids Research, 40, 5023-5033.
    • (2012) Nucleic Acids Research , vol.40 , pp. 5023-5033
    • Squires, J.E.1    Patel, H.R.2    Nousch, M.3
  • 63
    • 84863565805 scopus 로고    scopus 로고
    • Genome-wide DNA polymorphisms in elite indica rice inbreds discovered by whole-genome sequencing
    • Subbaiyan GK, Waters DLE, Katiyar SK et al. (2012) Genome-wide DNA polymorphisms in elite indica rice inbreds discovered by whole-genome sequencing. Plant Biotechnology Journal, 10, 623-634.
    • (2012) Plant Biotechnology Journal , vol.10 , pp. 623-634
    • Subbaiyan, G.K.1    Waters, D.L.E.2    Katiyar, S.K.3
  • 64
    • 84879422508 scopus 로고    scopus 로고
    • BLASTer.
    • Thompson C, Raub B (2013) BLASTer. https://diagrid.org/resources/blastgui
    • (2013)
    • Thompson, C.1    Raub, B.2
  • 65
    • 84861472550 scopus 로고    scopus 로고
    • Sequence-Based Genotyping for Marker Discovery and Co-Dominant Scoring in Germplasm and Populations
    • Truong HT, Ramos AM, Yalcin F et al. (2012) Sequence-Based Genotyping for Marker Discovery and Co-Dominant Scoring in Germplasm and Populations. PLoS One, 7, e37565.
    • (2012) PLoS One , vol.7
    • Truong, H.T.1    Ramos, A.M.2    Yalcin, F.3
  • 66
    • 84862956715 scopus 로고    scopus 로고
    • Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers
    • Varshney RK, Chen WB, Li YP et al. (2012) Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology, 30, 83-89.
    • (2012) Nature Biotechnology , vol.30 , pp. 83-89
    • Varshney, R.K.1    Chen, W.B.2    Li, Y.P.3
  • 67
    • 41149167170 scopus 로고    scopus 로고
    • Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
    • Vera JC, Wheat CW, Fescemyer HW et al. (2008) Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing. Molecular Ecology, 17, 1636-1647.
    • (2008) Molecular Ecology , vol.17 , pp. 1636-1647
    • Vera, J.C.1    Wheat, C.W.2    Fescemyer, H.W.3
  • 68
    • 84859061827 scopus 로고    scopus 로고
    • Exploring the switchgrass transcriptome using second-generation sequencing technology
    • Wang YX, Zeng X, Iyer NJ et al. (2012) Exploring the switchgrass transcriptome using second-generation sequencing technology. PLoS One, 7, e34225.
    • (2012) PLoS One , vol.7
    • Wang, Y.X.1    Zeng, X.2    Iyer, N.J.3
  • 69
    • 84859885207 scopus 로고    scopus 로고
    • Transcriptome-wide analysis of small RNA expression in early zebrafish development
    • Wei CY, Salichos L, Wittgrove CM, Rokas A, Patton JG (2012) Transcriptome-wide analysis of small RNA expression in early zebrafish development. RNA, 18, 915-929.
    • (2012) RNA , vol.18 , pp. 915-929
    • Wei, C.Y.1    Salichos, L.2    Wittgrove, C.M.3    Rokas, A.4    Patton, J.G.5
  • 70
    • 84862807626 scopus 로고    scopus 로고
    • Multicentric carpotarsal osteolysis is caused by mutations clustering in the amino-terminal transcriptional activation domain of MAFB
    • Zankl A, Duncan EL, Leo PJ et al. (2012) Multicentric carpotarsal osteolysis is caused by mutations clustering in the amino-terminal transcriptional activation domain of MAFB. American Journal of Human Genetics, 90, 494-501.
    • (2012) American Journal of Human Genetics , vol.90 , pp. 494-501
    • Zankl, A.1    Duncan, E.L.2    Leo, P.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.