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Volumn 12, Issue 2, 2012, Pages 259-266

Pyrosequencing of prey DNA in reptile faeces: Analysis of earthworm consumption by slow worms

Author keywords

Anguis fragilis; Molecular diagnostics; Next generation sequencing; Prey choice; Reptile diets

Indexed keywords

ANIMAL; ARTICLE; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; EATING; EVALUATION; FECES; FEEDING BEHAVIOR; GENETICS; METHODOLOGY; MOLECULAR GENETICS; OLIGOCHAETA; PHYLOGENY; PHYSIOLOGY; REPTILE;

EID: 84856712298     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/j.1755-0998.2011.03098.x     Document Type: Article
Times cited : (66)

References (45)
  • 1
    • 0344237218 scopus 로고    scopus 로고
    • Collembola as alternative prey sustaining spiders in arable ecosystems: prey detection within predators using molecular markers
    • Agustí N, Shayler SP, Harwood JD, Vaughan IP, Sunderland KD, Symondson WOC (2003) Collembola as alternative prey sustaining spiders in arable ecosystems: prey detection within predators using molecular markers. Molecular Ecology, 12, 3467-3475.
    • (2003) Molecular Ecology , vol.12 , pp. 3467-3475
    • Agustí, N.1    Shayler, S.P.2    Harwood, J.D.3    Vaughan, I.P.4    Sunderland, K.D.5    Symondson, W.O.C.6
  • 3
    • 34548129672 scopus 로고    scopus 로고
    • Inefficiency of mustard extraction technique for assessing size and structure of earthworm communities in UK pasture
    • Bartlett MD, Harris JA, James IT, Ritz K (2006) Inefficiency of mustard extraction technique for assessing size and structure of earthworm communities in UK pasture. Soil Biology and Biochemistry, 38, 2990-2992.
    • (2006) Soil Biology and Biochemistry , vol.38 , pp. 2990-2992
    • Bartlett, M.D.1    Harris, J.A.2    James, I.T.3    Ritz, K.4
  • 5
    • 79959397022 scopus 로고    scopus 로고
    • Molecular diet analysis of two African free-tailed bats (Molossidae) using high throughput sequencing
    • Bohmann K, Monadjem A, Lehmkuhl Noer C et al. (2011) Molecular diet analysis of two African free-tailed bats (Molossidae) using high throughput sequencing. PLoS ONE, 6, e21441.
    • (2011) PLoS ONE , vol.6
    • Bohmann, K.1    Monadjem, A.2    Lehmkuhl Noer, C.3
  • 6
    • 84856749583 scopus 로고    scopus 로고
    • Molecular analysis of the trophic interactions of British reptiles. PhD Thesis, Cardiff University.
    • Brown DS (2011) Molecular analysis of the trophic interactions of British reptiles. PhD Thesis, Cardiff University.
    • (2011)
    • Brown, D.S.1
  • 8
    • 0002117776 scopus 로고    scopus 로고
    • Factors affecting earthworm abundance in soils
    • (ed. Edwards CA) St. Lucie Press, USA.
    • Curry JP (1998) Factors affecting earthworm abundance in soils. In: Earthworm Ecology (ed. Edwards CA), pp. 37-64. St. Lucie Press, USA.
    • (1998) Earthworm Ecology , pp. 37-64
    • Curry, J.P.1
  • 9
    • 34247605387 scopus 로고    scopus 로고
    • Quantitative analysis of prey DNA in pinniped faeces: potential to estimate diet composition
    • Deagle BE, Tollit DJ (2007) Quantitative analysis of prey DNA in pinniped faeces: potential to estimate diet composition. Conservation Genetics, 8, 743-747.
    • (2007) Conservation Genetics , vol.8 , pp. 743-747
    • Deagle, B.E.1    Tollit, D.J.2
  • 10
    • 18244362349 scopus 로고    scopus 로고
    • Molecular scatology as a tool to study diet: analysis of prey DNA in scats from captive Stellar sea lions
    • Deagle BE, Tollit DJ, Jarman SN, Hindell MA, Trites AW, Gales NJ (2005) Molecular scatology as a tool to study diet: analysis of prey DNA in scats from captive Stellar sea lions. Molecular Ecology, 14, 1831-1842.
    • (2005) Molecular Ecology , vol.14 , pp. 1831-1842
    • Deagle, B.E.1    Tollit, D.J.2    Jarman, S.N.3    Hindell, M.A.4    Trites, A.W.5    Gales, N.J.6
  • 11
    • 38849163396 scopus 로고    scopus 로고
    • Studying seabird diet through genetic analysis of faeces: a case study on macaroni penguins (Eudyptes chrysolophus)
    • Deagle BE, Gales NJ, Evans K et al. (2007) Studying seabird diet through genetic analysis of faeces: a case study on macaroni penguins (Eudyptes chrysolophus). PLoS ONE, 2, e831.
    • (2007) PLoS ONE , vol.2
    • Deagle, B.E.1    Gales, N.J.2    Evans, K.3
  • 12
    • 65449140394 scopus 로고    scopus 로고
    • Analysis of Australian fur seal diet by pyrosequencing prey DNA in faeces
    • Deagle BE, Kirkwood R, Jarman SN (2009) Analysis of Australian fur seal diet by pyrosequencing prey DNA in faeces. Molecular Ecology, 18, 2022-2038.
    • (2009) Molecular Ecology , vol.18 , pp. 2022-2038
    • Deagle, B.E.1    Kirkwood, R.2    Jarman, S.N.3
  • 13
    • 77956879874 scopus 로고    scopus 로고
    • Pyrosequencing faecal DNA to determine diet of little penguins: is what goes in what comes out?
    • Deagle BE, Chiaradia A, McInnes J, Jarman SN (2010) Pyrosequencing faecal DNA to determine diet of little penguins: is what goes in what comes out? Conservation Genetics, 11, 2039-2048.
    • (2010) Conservation Genetics , vol.11 , pp. 2039-2048
    • Deagle, B.E.1    Chiaradia, A.2    McInnes, J.3    Jarman, S.N.4
  • 14
    • 33746326826 scopus 로고    scopus 로고
    • An adapted method for sampling earthworms at night in wildlife studies
    • Duriez O, Ferrand Y, Binet F (2006) An adapted method for sampling earthworms at night in wildlife studies. The Journal of Wildlife Management, 70, 852-858.
    • (2006) The Journal of Wildlife Management , vol.70 , pp. 852-858
    • Duriez, O.1    Ferrand, Y.2    Binet, F.3
  • 15
    • 0025956481 scopus 로고
    • Methods for assessing populations of soil-inhabiting invertebrates
    • Edwards CA (1991) Methods for assessing populations of soil-inhabiting invertebrates. Agriculture, Ecosystems and Environment, 34, 145-176.
    • (1991) Agriculture, Ecosystems and Environment , vol.34 , pp. 145-176
    • Edwards, C.A.1
  • 16
    • 0028528103 scopus 로고
    • DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates
    • Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294-299.
    • (1994) Molecular Marine Biology and Biotechnology , vol.3 , pp. 294-299
    • Folmer, O.1    Black, M.2    Hoeh, W.3    Lutz, R.4    Vrijenhoek, R.5
  • 17
    • 0002203367 scopus 로고
    • The distribution and population density of earthworms Lumbricidae. in Scottish pasture fields
    • Guild WJMCL (1951) The distribution and population density of earthworms Lumbricidae. in Scottish pasture fields. Journal of Animal Ecology, 20, 88-97.
    • (1951) Journal of Animal Ecology , vol.20 , pp. 88-97
    • Guild, W.J.M.C.L.1
  • 18
    • 14844302832 scopus 로고    scopus 로고
    • Rapid screening of invertebrate predators for multiple prey DNA targets
    • Harper GL, King RA, Dodd CS et al. (2005) Rapid screening of invertebrate predators for multiple prey DNA targets. Molecular Ecology, 14, 819-827.
    • (2005) Molecular Ecology , vol.14 , pp. 819-827
    • Harper, G.L.1    King, R.A.2    Dodd, C.S.3
  • 19
    • 1942517869 scopus 로고    scopus 로고
    • Group-specific polymerase chain reaction for DNA-based analysis of species diversity and identity in dietary samples
    • Jarman SN, Deagle BE, Gales NJ (2004) Group-specific polymerase chain reaction for DNA-based analysis of species diversity and identity in dietary samples. Molecular Ecology, 13, 1313-1322.
    • (2004) Molecular Ecology , vol.13 , pp. 1313-1322
    • Jarman, S.N.1    Deagle, B.E.2    Gales, N.J.3
  • 20
    • 38849100922 scopus 로고    scopus 로고
    • Molecular analysis of predation: a review of best practice for DNA-based approaches
    • King RA, Read DS, Traugott M, Symondson WOC (2008a) Molecular analysis of predation: a review of best practice for DNA-based approaches. Molecular Ecology, 17, 947-963.
    • (2008) Molecular Ecology , vol.17 , pp. 947-963
    • King, R.A.1    Read, D.S.2    Traugott, M.3    Symondson, W.O.C.4
  • 21
    • 54849432953 scopus 로고    scopus 로고
    • Opening a can of worms: unprecedented sympatric cryptic diversity within British lumbricid earthworms
    • King RA, Tibble AL, Symondson WOC (2008b) Opening a can of worms: unprecedented sympatric cryptic diversity within British lumbricid earthworms. Molecular Ecology, 17, 4684-4698.
    • (2008) Molecular Ecology , vol.17 , pp. 4684-4698
    • King, R.A.1    Tibble, A.L.2    Symondson, W.O.C.3
  • 22
    • 77950240195 scopus 로고    scopus 로고
    • Prey choice by carabid beetles feeding on an earthworm community analysed using species- and lineage-specific PCR primers
    • King AR, Vaughan IP, Bell JR, Bohan DA, Symondson WOC (2010) Prey choice by carabid beetles feeding on an earthworm community analysed using species- and lineage-specific PCR primers. Molecular Ecology, 19, 1721-1732.
    • (2010) Molecular Ecology , vol.19 , pp. 1721-1732
    • King, A.R.1    Vaughan, I.P.2    Bell, J.R.3    Bohan, D.A.4    Symondson, W.O.C.5
  • 23
    • 78651471796 scopus 로고    scopus 로고
    • Influence of management practices on large herbivore diet-Case of European bison in Białowieza Primeval Forest (Poland)
    • Kowalczyka R, Taberlet P, Coissac E et al. (2011) Influence of management practices on large herbivore diet-Case of European bison in Białowieza Primeval Forest (Poland). Forest Ecology and Management, 261, 821-828.
    • (2011) Forest Ecology and Management , vol.261 , pp. 821-828
    • Kowalczyka, R.1    Taberlet, P.2    Coissac, E.3
  • 24
    • 0004246283 scopus 로고    scopus 로고
    • Kluwer Academic Publishers, Dordrecht, The Netherlands.
    • Lavelle P, Spain AV (2001) Soil Ecology. Kluwer Academic Publishers, Dordrecht, The Netherlands.
    • (2001) Soil Ecology
    • Lavelle, P.1    Spain, A.V.2
  • 25
    • 84856737394 scopus 로고    scopus 로고
    • Growth rate of Ailsa Craig slow-worms Anguis fragilis: prey preference and temperature effects
    • Lavery C, Downie JR, Livingstone SR (2004) Growth rate of Ailsa Craig slow-worms Anguis fragilis: prey preference and temperature effects. Glasgow Naturalist, 24, 79-85.
    • (2004) Glasgow Naturalist , vol.24 , pp. 79-85
    • Lavery, C.1    Downie, J.R.2    Livingstone, S.R.3
  • 28
    • 0344776986 scopus 로고
    • The diet of the slow worm, Anguis f. fragilis Linnaeus, 1758, in the Tarvisio Forest (Carnic Alps, NE Italy)
    • Luiselli L (1992) The diet of the slow worm, Anguis f. fragilis Linnaeus, 1758, in the Tarvisio Forest (Carnic Alps, NE Italy). Herpetozoa, 5, 91-94.
    • (1992) Herpetozoa , vol.5 , pp. 91-94
    • Luiselli, L.1
  • 29
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies M, Egholm M, Altman WE et al. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature, 437, 376-380.
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1    Egholm, M.2    Altman, W.E.3
  • 30
    • 67650948273 scopus 로고    scopus 로고
    • DNA evidence of whale sharks (Rhincodon typus) feeding on red crab (Gecarcoidea natalis) larvae at Christmas Island, Australia
    • Meekan MG, Jarman SN, McLean C, Schultz MB (2009) DNA evidence of whale sharks (Rhincodon typus) feeding on red crab (Gecarcoidea natalis) larvae at Christmas Island, Australia. Marine and Freshwater Research, 60, 607-609.
    • (2009) Marine and Freshwater Research , vol.60 , pp. 607-609
    • Meekan, M.G.1    Jarman, S.N.2    McLean, C.3    Schultz, M.B.4
  • 31
    • 0032839489 scopus 로고    scopus 로고
    • The role of earthworms for assessment of sustainability and as bioindicators
    • Paoletti MG (1999) The role of earthworms for assessment of sustainability and as bioindicators. Agriculture, Ecosystems and Environment, 74, 137-155.
    • (1999) Agriculture, Ecosystems and Environment , vol.74 , pp. 137-155
    • Paoletti, M.G.1
  • 33
    • 69149096155 scopus 로고    scopus 로고
    • A method of obtaining dietary data for slow worms (Anguis fragilis) by means of non-harmful cooling and results from a Danish population
    • Pedersen IL, Jensen JK, Toft S (2009) A method of obtaining dietary data for slow worms (Anguis fragilis) by means of non-harmful cooling and results from a Danish population. Journal of Natural History, 43, 1011-1025.
    • (2009) Journal of Natural History , vol.43 , pp. 1011-1025
    • Pedersen, I.L.1    Jensen, J.K.2    Toft, S.3
  • 34
    • 33750323926 scopus 로고    scopus 로고
    • Nota sobre la alimentacion de Pleurdodema bufonina Bell, 1843 (Anura: Leptodactylidae)
    • Pincheira-Donoso D (2002) Nota sobre la alimentacion de Pleurdodema bufonina Bell, 1843 (Anura: Leptodactylidae). Gayana, 66, 77-80.
    • (2002) Gayana , vol.66 , pp. 77-80
    • Pincheira-Donoso, D.1
  • 36
    • 0037310350 scopus 로고    scopus 로고
    • The correlation between rDNA copy number and genome size in eukaryotes
    • Prokopowich CD, Gregory TR, Crease TJ (2003) The correlation between rDNA copy number and genome size in eukaryotes. Genome, 46, 48-50.
    • (2003) Genome , vol.46 , pp. 48-50
    • Prokopowich, C.D.1    Gregory, T.R.2    Crease, T.J.3
  • 37
    • 0001611253 scopus 로고
    • Earthworm population studies: a comparison of sampling methods
    • Raw F (1960) Earthworm population studies: a comparison of sampling methods. Nature, 187, 257.
    • (1960) Nature , vol.187 , pp. 257
    • Raw, F.1
  • 38
    • 57449091536 scopus 로고    scopus 로고
    • Digestive physiology of the Burmese python: broad regulation of integrated performance
    • Secor SM (2008) Digestive physiology of the Burmese python: broad regulation of integrated performance. The Journal of Experimental Biology, 211, 3767-3774.
    • (2008) The Journal of Experimental Biology , vol.211 , pp. 3767-3774
    • Secor, S.M.1
  • 39
    • 84856737392 scopus 로고
    • The ecology of the slow worm (Anguis fragilis L.) in Southern England. MPhil Thesis, University of Southampton.
    • Smith ND (1990) The ecology of the slow worm (Anguis fragilis L.) in Southern England. MPhil Thesis, University of Southampton.
    • (1990)
    • Smith, N.D.1
  • 40
    • 70349272591 scopus 로고    scopus 로고
    • Analysing diet of small herbivores: the efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures
    • Soininen EM, Valentini A, Coissac E et al. (2009) Analysing diet of small herbivores: the efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures. Frontiers in Zoology, 6, 16.
    • (2009) Frontiers in Zoology , vol.6 , pp. 16
    • Soininen, E.M.1    Valentini, A.2    Coissac, E.3
  • 41
    • 0036010821 scopus 로고    scopus 로고
    • Molecular identification of prey in predator diets
    • Symondson WOC (2002) Molecular identification of prey in predator diets. Molecular Ecology, 11, 627-641.
    • (2002) Molecular Ecology , vol.11 , pp. 627-641
    • Symondson, W.O.C.1
  • 42
    • 0027968068 scopus 로고
    • ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673-4680.
    • (1994) Nucleic Acids Research , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 43
    • 58949104467 scopus 로고    scopus 로고
    • New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: the trnL approach
    • Valentini A, Miquel C, Nawaz MA et al. (2009a) New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: the trnL approach. Molecular Ecology Resources, 9, 51-60.
    • (2009) Molecular Ecology Resources , vol.9 , pp. 51-60
    • Valentini, A.1    Miquel, C.2    Nawaz, M.A.3
  • 45
    • 42249087308 scopus 로고    scopus 로고
    • The complete genome of an individual by massively parallel DNA sequencing
    • Wheeler DA, Srinivasan M, Egholm M et al. (2008) The complete genome of an individual by massively parallel DNA sequencing. Nature, 452, 872-876.
    • (2008) Nature , vol.452 , pp. 872-876
    • Wheeler, D.A.1    Srinivasan, M.2    Egholm, M.3


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