A hybrid next generation transcript sequencing-based approach to identify allelic and homeolog-specific single nucleotide polymorphisms in allotetraploid white clover

BMC Genomics

Volumn 14, Issue 1, 2013, Pages

  Nagy, Istvan ^a,b   Barth, Susanne ^a   Mehenni Ciz, Jeanne ^a   Abberton, Michael T ^c,d   Milbourne, Dan ^a  

^a TEAGASC   (Ireland)

^b AARHUS UNIVERSITY   (Denmark)

^c ABERYSTWYTH UNIVERSITY   (United Kingdom)

^d INTERNATIONAL INSTITUTE OF TROPICAL AGRICULTURE   (Nigeria)

Author keywords

Allelic variants; Allotetraploid; Haplotype reconstruction; Next generation sequencing; Single nucleotide polymorphisms; Sub genome; Transcript assembly; Trifolium; White clover

Indexed keywords

ACYL COENZYME A OXIDASE; BINDING PROTEIN; DEHYDRATION RESPONSIVE ELEMENT BINDING PROTEIN; UNCLASSIFIED DRUG;

ALLOTETRAPLOIDY; ARTICLE; EXPRESSED SEQUENCE TAG; GENOTYPE; HAPLOTYPE; HOMOZYGOSITY; INBRED STRAIN; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GENE; PLANT GENOME; PYROSEQUENCING; SINGLE NUCLEOTIDE POLYMORPHISM; TETRAPLOIDY; WHITE CLOVER;

ALLELES; EXPRESSED SEQUENCE TAGS; HAPLOTYPES; HOMOZYGOTE; INBREEDING; POLYMORPHISM, SINGLE NUCLEOTIDE; RNA, MESSENGER; SEQUENCE ANALYSIS, RNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; TETRAPLOIDY; TRIFOLIUM;

EID: 84879414655     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-100     Document Type: Article

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