The effects of contig length and depth on the estimation of SNP frequencies, and the relative abundance of SNPs in protein-coding and non-coding transcripts of tiger salamanders (Ambystoma tigrinum)

BMC Genomics

Volumn 13, Issue 1, 2012, Pages

  Eo, Soo H ^a,c   DeWoody, J A ^a,b  

^a Purdue University ^*  (United States)

^b PURDUE UNIVERSITY   (United States)

^c UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

454 sequencing; Contig depth; Contig length; Model selection; SNP frequency; Transcriptome

Indexed keywords

COMPLEMENTARY DNA; MESSENGER RNA; SMALL UNTRANSLATED RNA; TRANSCRIPTOME; PROTEIN;

AMBYSTOMA; AMBYSTOMA TIGRINUM; ANIMAL TISSUE; ARTICLE; GENE FREQUENCY; GENETIC CODE; GENETIC MODEL; NONHUMAN; OPEN READING FRAME; PREDICTION; PYROSEQUENCING; QUALITY CONTROL; RNA EXTRACTION; SINGLE NUCLEOTIDE POLYMORPHISM; ANIMAL; BIOLOGICAL MODEL; CONTIG MAPPING; DNA SEQUENCE; GENETICS; GENOTYPE; METABOLISM;

AMBYSTOMA TIGRINUM; AMBYSTOMA TIGRINUM TIGRINUM;

AMBYSTOMA; ANIMALS; CONTIG MAPPING; GENE FREQUENCY; GENOTYPE; MODELS, GENETIC; POLYMORPHISM, SINGLE NUCLEOTIDE; PROTEINS; SEQUENCE ANALYSIS, DNA; TRANSCRIPTOME;

EID: 84862313166     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-259     Document Type: Article

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