-
1
-
-
17444383490
-
A combination of AFLP and SSR markers provides extensive map coverage and identification of homo(eo)logous linkage groups in a sugarcane cultivar
-
Aitken, K.S., Jackson, P.A. and McIntyre, C.L. (2005) A combination of AFLP and SSR markers provides extensive map coverage and identification of homo(eo)logous linkage groups in a sugarcane cultivar. Theor. Appl. Genet. 110, 789-801.
-
(2005)
Theor. Appl. Genet.
, vol.110
, pp. 789-801
-
-
Aitken, K.S.1
Jackson, P.A.2
McIntyre, C.L.3
-
2
-
-
35748951614
-
Direct selection of human genomic loci by microarray hybridization
-
Albert, T.J., Molla, M.N., Muzny, D.M., Nazareth, L., Wheeler, D., Song, X.Z., Richmond, T.A., Middle, C.M., Rodesch, M.J., Packard, C.J., Weinstock, G.M. and Gibbs, R.A. (2007) Direct selection of human genomic loci by microarray hybridization. Nat. Methods, 4, 903-905.
-
(2007)
Nat. Methods
, vol.4
, pp. 903-905
-
-
Albert, T.J.1
Molla, M.N.2
Muzny, D.M.3
Nazareth, L.4
Wheeler, D.5
Song, X.Z.6
Richmond, T.A.7
Middle, C.M.8
Rodesch, M.J.9
Packard, C.J.10
Weinstock, G.M.11
Gibbs, R.A.12
-
3
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. (1990) Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
4
-
-
23644449057
-
Direct genomic selection
-
Bashiardes, S., Veile, R., Helms, C., Mardis, E.R., Bowcock, A.M. and Lovett, M. (2005) Direct genomic selection. Nat. Methods, 2, 63-69.
-
(2005)
Nat. Methods
, vol.2
, pp. 63-69
-
-
Bashiardes, S.1
Veile, R.2
Helms, C.3
Mardis, E.R.4
Bowcock, A.M.5
Lovett, M.6
-
5
-
-
0018887040
-
Sequence of the human insulin gene
-
Bell, G.I., Pictet, R.L., Rutter, W.J., Cordell, B., Tischer, E. and Goodman, H.M. (1980) Sequence of the human insulin gene. Nature, 284, 26-32.
-
(1980)
Nature
, vol.284
, pp. 26-32
-
-
Bell, G.I.1
Pictet, R.L.2
Rutter, W.J.3
Cordell, B.4
Tischer, E.5
Goodman, H.M.6
-
6
-
-
64749112341
-
Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing
-
Bundock, P.C., Eliott, F.G., Ablett, G., Benson, A.D., Casu, R.E., Aitken, K.S. and Henry, R.J. (2009) Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing. Plant Biotechnol. J. 7, 347-354.
-
(2009)
Plant Biotechnol. J.
, vol.7
, pp. 347-354
-
-
Bundock, P.C.1
Eliott, F.G.2
Ablett, G.3
Benson, A.D.4
Casu, R.E.5
Aitken, K.S.6
Henry, R.J.7
-
7
-
-
27244436950
-
Multiplex amplification enabled by selective circularization of large sets of genomic DNA fragments
-
Dahl, F., Gullberg, M., Stenberg, J., Landegren, U. and Nilsson, M. (2005) Multiplex amplification enabled by selective circularization of large sets of genomic DNA fragments. Nucleic Acids Res. 33 (8), e71.
-
(2005)
Nucleic Acids Res.
, vol.33
, Issue.8
-
-
Dahl, F.1
Gullberg, M.2
Stenberg, J.3
Landegren, U.4
Nilsson, M.5
-
8
-
-
34547170039
-
Multigene amplification and massively parallel sequencing for cancer mutation discovery
-
Dahl, F., Stenberg, J., Fredriksson, S., Welch, K., Zhang, M., Nilsson, M., Bicknell, D., Bodmer, W.F., Davis, R.W. and Ji, H. (2007) Multigene amplification and massively parallel sequencing for cancer mutation discovery. Proc. Natl Acad. Sci. USA, 104, 9387-9392.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 9387-9392
-
-
Dahl, F.1
Stenberg, J.2
Fredriksson, S.3
Welch, K.4
Zhang, M.5
Nilsson, M.6
Bicknell, D.7
Bodmer, W.F.8
Davis, R.W.9
Ji, H.10
-
9
-
-
77952865614
-
Repeat subtraction-mediated sequence capture from a complex genome
-
Fu, Y., Springer, N.M., Gerhardt, D.J., Ying, K., Yeh, C.T., Wu, W., Swanson-Wagner, R., D'Ascenzo, M., Millard, T., Freeberg, L., Aoyama, N., Kitzman, J., Burgess, D., Richmond, T., Albert, T.J., Barbazuk, W.B., Jeddeloh, J.A. and Schnable, P.S. (2010) Repeat subtraction-mediated sequence capture from a complex genome. Plant J. 62, 898-909.
-
(2010)
Plant J.
, vol.62
, pp. 898-909
-
-
Fu, Y.1
Springer, N.M.2
Gerhardt, D.J.3
Ying, K.4
Yeh, C.T.5
Wu, W.6
Swanson-Wagner, R.7
D'Ascenzo, M.8
Millard, T.9
Freeberg, L.10
Aoyama, N.11
Kitzman, J.12
Burgess, D.13
Richmond, T.14
Albert, T.J.15
Barbazuk, W.B.16
Jeddeloh, J.A.17
Schnable, P.S.18
-
10
-
-
59849113821
-
Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing
-
Gnirke, A., Melnikov, A., Maguire, J., Rogov, P., LeProust, E.M., Brockman, W., Fennell, T., Giannoukos, G., Fisher, S., Russ, C., Gabriel, S., Jaffe, D.B., Lander, E.S. and Nusbaum, C. (2009) Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing. Nat. Biotechnol. 27, 182-189.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 182-189
-
-
Gnirke, A.1
Melnikov, A.2
Maguire, J.3
Rogov, P.4
LeProust, E.M.5
Brockman, W.6
Fennell, T.7
Giannoukos, G.8
Fisher, S.9
Russ, C.10
Gabriel, S.11
Jaffe, D.B.12
Lander, E.S.13
Nusbaum, C.14
-
11
-
-
0000925040
-
Colony hybridization: a method for the isolation of cloned DNAs that contain a specific gene
-
Grunstein, M. and Hogness, D.S. (1975) Colony hybridization: a method for the isolation of cloned DNAs that contain a specific gene. Proc. Natl Acad. Sci. USA, 72, 3961-3965.
-
(1975)
Proc. Natl Acad. Sci. USA
, vol.72
, pp. 3961-3965
-
-
Grunstein, M.1
Hogness, D.S.2
-
12
-
-
0037685262
-
Multiplexed genotyping with sequence-tagged molecular inversion probes
-
Hardenbol, P., Baner, J., Jain, M., Nilsson, M., Namsaraev, E.A., Karlin Neumann, G.A., Fakhrai-Rad, H., Ronaghi, M., Willis, T.D., Landegren, U. and Davis, R.W. (2003) Multiplexed genotyping with sequence-tagged molecular inversion probes. Nat. Biotechnol. 21, 673-678.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 673-678
-
-
Hardenbol, P.1
Baner, J.2
Jain, M.3
Nilsson, M.4
Namsaraev, E.A.5
Karlin Neumann, G.A.6
Fakhrai-Rad, H.7
Ronaghi, M.8
Willis, T.D.9
Landegren, U.10
Davis, R.W.11
-
13
-
-
20044386880
-
Highly multiplexed molecular inversion probe genotyping: over 10,000 targeted SNPs genotyped in a single tube assay
-
Hardenbol, P., Yu, F.L., Belmont, J., MacKenzie, J., Bruckner, C., Brundage, T., Boudreau, A., Chow, S., Eberle, J., Erbilgin, A., Falkowski, M., Fitzgerald, R., Ghose, S., Iartchouk, O., Jain, M., Karlin-Neumann, G., Lu, X.H., Miao, X., Moore, B., Moorhead, M., Namsaraev, E., Pasternak, S., Prakash, E., Tran, K., Wang, Z.Y., Jones, H.B., Davis, R.W., Willis, T.D. and Gibbs, R.A. (2005) Highly multiplexed molecular inversion probe genotyping: over 10, 000 targeted SNPs genotyped in a single tube assay. Genome Res. 15, 269-275.
-
(2005)
Genome Res.
, vol.15
, pp. 269-275
-
-
Hardenbol, P.1
Yu, F.L.2
Belmont, J.3
MacKenzie, J.4
Bruckner, C.5
Brundage, T.6
Boudreau, A.7
Chow, S.8
Eberle, J.9
Erbilgin, A.10
Falkowski, M.11
Fitzgerald, R.12
Ghose, S.13
Iartchouk, O.14
Jain, M.15
Karlin-Neumann, G.16
Lu, X.H.17
Miao, X.18
Moore, B.19
Moorhead, M.20
Namsaraev, E.21
Pasternak, S.22
Prakash, E.23
Tran, K.24
Wang, Z.Y.25
Jones, H.B.26
Davis, R.W.27
Willis, T.D.28
Gibbs, R.A.29
more..
-
14
-
-
36549021060
-
Genome-wide in situ exon capture for selective resequencing
-
Hodges, E., Xuan, Z., Balija, V., Kramer, M., Molla, M.N., Smith, S.W., Middle, C.M., Rodesch, M.J., Albert, T.J., Hannon, G.J. and McCombie, W.R. (2007) Genome-wide in situ exon capture for selective resequencing. Nat. Genet. 39, 1522-1527.
-
(2007)
Nat. Genet.
, vol.39
, pp. 1522-1527
-
-
Hodges, E.1
Xuan, Z.2
Balija, V.3
Kramer, M.4
Molla, M.N.5
Smith, S.W.6
Middle, C.M.7
Rodesch, M.J.8
Albert, T.J.9
Hannon, G.J.10
McCombie, W.R.11
-
15
-
-
80955151523
-
Discovery of polymorphisms in starch related genes in rice germplasm by amplification of pooled DNA and deeply parallel sequencing
-
Kharabian-Masouleh, A., Waters, D.L.E., Reinke, R.F. and Henry, R.J. (2011) Discovery of polymorphisms in starch related genes in rice germplasm by amplification of pooled DNA and deeply parallel sequencing. Plant Biotechnol. J. 9, 1074-1085.
-
(2011)
Plant Biotechnol. J.
, vol.9
, pp. 1074-1085
-
-
Kharabian-Masouleh, A.1
Waters, D.L.E.2
Reinke, R.F.3
Henry, R.J.4
-
16
-
-
0026048571
-
Direct selection-a method for the isolation of cDNAs encoded by large genomic regions
-
Lovett, M., Kere, J. and Hinton, L.M. (1991) Direct selection-a method for the isolation of cDNAs encoded by large genomic regions. Proc. Natl Acad. Sci. USA, 88, 9628-9632.
-
(1991)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 9628-9632
-
-
Lovett, M.1
Kere, J.2
Hinton, L.M.3
-
17
-
-
80955158795
-
Characterizing homologues of crop domestication genes in poorly described wild relatives by high-throughput sequencing of whole genomes
-
Malory, S., Shapter, F.M., Elphinstone, M.S., Chivers, I.H. and Henry, R.J. (2011) Characterizing homologues of crop domestication genes in poorly described wild relatives by high-throughput sequencing of whole genomes. Plant Biotechnol. J. 9, 1131-1140.
-
(2011)
Plant Biotechnol. J.
, vol.9
, pp. 1131-1140
-
-
Malory, S.1
Shapter, F.M.2
Elphinstone, M.S.3
Chivers, I.H.4
Henry, R.J.5
-
18
-
-
77449121614
-
Target-enrichment strategies for next generation sequencing
-
Mamanova, L., Coffey, A.J., Scott, C.E., Kozarewa, I., Turner, E.H., Kumar, A., Howard, E., Shendure, J. and Turner, D.J. (2010) Target-enrichment strategies for next generation sequencing. Nat. Methods, 7, 111-118.
-
(2010)
Nat. Methods
, vol.7
, pp. 111-118
-
-
Mamanova, L.1
Coffey, A.J.2
Scott, C.E.3
Kozarewa, I.4
Turner, E.H.5
Kumar, A.6
Howard, E.7
Shendure, J.8
Turner, D.J.9
-
19
-
-
0026731946
-
The selective isolation of novel cDNAs encoded by the regions surrounding the human interleukin-4 and interleukin-5 genes
-
Morgan, J.G., Dolganov, G.M., Robbins, S.E., Hinton, L.M. and Lovett, M. (1992) The selective isolation of novel cDNAs encoded by the regions surrounding the human interleukin-4 and interleukin-5 genes. Nucleic Acids Res. 20, 5173-5179.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 5173-5179
-
-
Morgan, J.G.1
Dolganov, G.M.2
Robbins, S.E.3
Hinton, L.M.4
Lovett, M.5
-
20
-
-
0023461268
-
Specific synthesis of DNA in vitro via a polymerase-catalyzed chain-reaction
-
Mullis, K.B. and Faloona, F.A. (1987) Specific synthesis of DNA in vitro via a polymerase-catalyzed chain-reaction. Methods Enzymol. 155, 335-350.
-
(1987)
Methods Enzymol.
, vol.155
, pp. 335-350
-
-
Mullis, K.B.1
Faloona, F.A.2
-
21
-
-
70249111091
-
Targeted capture and massively parallel sequencing of 12 human exomes
-
Ng, S.B., Turner, E.H., Robertson, P.D., Flygare, S.D., Bigham, A.W., Lee, C., Shaffer, T., Wong, M., Bhattacharjee, A., Eichler, E.E., Bamshad, M., Nickerson, D.A. and Shendure, J. (2009) Targeted capture and massively parallel sequencing of 12 human exomes. Nature, 461, 272-276.
-
(2009)
Nature
, vol.461
, pp. 272-276
-
-
Ng, S.B.1
Turner, E.H.2
Robertson, P.D.3
Flygare, S.D.4
Bigham, A.W.5
Lee, C.6
Shaffer, T.7
Wong, M.8
Bhattacharjee, A.9
Eichler, E.E.10
Bamshad, M.11
Nickerson, D.A.12
Shendure, J.13
-
22
-
-
77956642100
-
Exome sequencing identifies MLL2 mutations as a cause of Kabuki syndrome
-
Ng, S.B., Bigham, A.W., Buckingham, K.J., Hannibal, M.C., McMillin, M.J., Gildersleeve, H.I., Beck, A.E., Tabor, H.K., Cooper, G.M., Mefford, H.C., Lee, C., Turner, E.H., Smith, J.D., Rieder, M.J., Yoshiura, K., Matsumoto, N., Ohta, T., Niikawa, N., Nickerson, D.A., Bamshad, M.J. and Shendure, J. (2010a) Exome sequencing identifies MLL2 mutations as a cause of Kabuki syndrome. Nat. Genet. 42, 790-793.
-
(2010)
Nat. Genet.
, vol.42
, pp. 790-793
-
-
Ng, S.B.1
Bigham, A.W.2
Buckingham, K.J.3
Hannibal, M.C.4
McMillin, M.J.5
Gildersleeve, H.I.6
Beck, A.E.7
Tabor, H.K.8
Cooper, G.M.9
Mefford, H.C.10
Lee, C.11
Turner, E.H.12
Smith, J.D.13
Rieder, M.J.14
Yoshiura, K.15
Matsumoto, N.16
Ohta, T.17
Niikawa, N.18
Nickerson, D.A.19
Bamshad, M.J.20
Shendure, J.21
more..
-
23
-
-
73349110071
-
Exome sequencing identifies the cause of a mendelian disorder
-
Ng, S.B., Buckingham, K.J., Lee, C., Bigham, A.W., Tabor, H.K., Dent, K.M., Huff, C.D., Shannon, P.T., Jabs, E.W., Nickerson, D.A., Shendure, J. and Bamshad, M.J. (2010b) Exome sequencing identifies the cause of a mendelian disorder. Nat. Genet. 42, 30-35.
-
(2010)
Nat. Genet.
, vol.42
, pp. 30-35
-
-
Ng, S.B.1
Buckingham, K.J.2
Lee, C.3
Bigham, A.W.4
Tabor, H.K.5
Dent, K.M.6
Huff, C.D.7
Shannon, P.T.8
Jabs, E.W.9
Nickerson, D.A.10
Shendure, J.11
Bamshad, M.J.12
-
24
-
-
35748959649
-
Microarray-based genomic selection for high-throughput resequencing
-
Okou, D.T., Steinberg, K.M., Middle, C., Cutler, D.J., Albert, T.J. and Zwick, M.E. (2007) Microarray-based genomic selection for high-throughput resequencing. Nat. Methods, 4, 907-909.
-
(2007)
Nat. Methods
, vol.4
, pp. 907-909
-
-
Okou, D.T.1
Steinberg, K.M.2
Middle, C.3
Cutler, D.J.4
Albert, T.J.5
Zwick, M.E.6
-
25
-
-
58449137410
-
The Sorghum bicolor genome and the diversification of grasses
-
Paterson, A.H., Bowers, J.E., Bruggmann, R., Dubchak, I., Grimwood, J., Gundlach, H., Haberer, G., Hellsten, U., Mitros, T., Poliakov, A., Schmutz, J., Spannagl, M., Tang, H., Wang, X., Wicker, T., Bharti, A.K., Chapman, J., Feltus, F.A., Gowik, U., Grigoriev, I.V., Lyons, E., Maher, C.A., Martis, M., Narechania, A., Otillar, R.P., Penning, B.W., Salamov, A.A., Wang, Y., Zhang, L., Carpita, N.C., Freeling, M., Gingle, A.R., Hash, C.T., Keller, B., Klein, P., Kresovich, S., McCann, M.C., Ming, R., Peterson, D.G., Mehboob-Ur-Rahman, Ware, D., Westhoff, P., Mayer, K.F., Messing, J. and Rokhsar, D.S. (2009) The Sorghum bicolor genome and the diversification of grasses. Nature, 457, 551-556.
-
(2009)
Nature
, vol.457
, pp. 551-556
-
-
Paterson, A.H.1
Bowers, J.E.2
Bruggmann, R.3
Dubchak, I.4
Grimwood, J.5
Gundlach, H.6
Haberer, G.7
Hellsten, U.8
Mitros, T.9
Poliakov, A.10
Schmutz, J.11
Spannagl, M.12
Tang, H.13
Wang, X.14
Wicker, T.15
Bharti, A.K.16
Chapman, J.17
Feltus, F.A.18
Gowik, U.19
Grigoriev, I.V.20
Lyons, E.21
Maher, C.A.22
Martis, M.23
Narechania, A.24
Otillar, R.P.25
Penning, B.W.26
Salamov, A.A.27
Wang, Y.28
Zhang, L.29
Carpita, N.C.30
Freeling, M.31
Gingle, A.R.32
Hash, C.T.33
Keller, B.34
Klein, P.35
Kresovich, S.36
McCann, M.C.37
Ming, R.38
Peterson, D.G.39
Mehboob-Ur-Rahman Ware, D.40
Westhoff, P.41
Mayer, K.F.42
Messing, J.43
Rokhsar, D.S.44
more..
-
26
-
-
82355173420
-
The sugarcane genome challenges: strategies for sequencing a highly complex genome
-
Souza, G.M., Berges, H., Bocs, S., Casu, R., D'Hont, A., Ferreira, J.E., Henry, R., Ming Potier, R.B., Van Sluys, M.A., Vincentz, M. and Paterson, A.H. (2011) The sugarcane genome challenges: strategies for sequencing a highly complex genome. Trop. Plant Biol. 4, 145-156.
-
(2011)
Trop. Plant Biol.
, vol.4
, pp. 145-156
-
-
Souza, G.M.1
Berges, H.2
Bocs, S.3
Casu, R.4
D'Hont, A.5
Ferreira, J.E.6
Henry, R.7
Ming Potier, R.B.8
Van Sluys, M.A.9
Vincentz, M.10
Paterson, A.H.11
-
27
-
-
75349097525
-
Enrichment of sequencing targets from the human genome by solution hybridization
-
Tewhey, R., Nakano, M., Wang, X.Y., Pabon-Pena, C., Novak, B., Giuffre, A., Lin, E., Happe, S., Roberts, D.N., LeProust, E.M., Topol, E.J., Harismendy, O. and Frazer, K.A. (2009a) Enrichment of sequencing targets from the human genome by solution hybridization. Genome Biol. 10, R116.
-
(2009)
Genome Biol.
, vol.10
-
-
Tewhey, R.1
Nakano, M.2
Wang, X.Y.3
Pabon-Pena, C.4
Novak, B.5
Giuffre, A.6
Lin, E.7
Happe, S.8
Roberts, D.N.9
LeProust, E.M.10
Topol, E.J.11
Harismendy, O.12
Frazer, K.A.13
-
28
-
-
70449339945
-
Microdroplet-based PCR enrichment for large-scale targeted sequencing
-
Tewhey, R., Warner, J.B., Nakano, M., Libby, B., Medkova, M., David, P.H., Kotsopoulos, S.K., Samuels, M.L., Hutchison, J.B., Larson, J.W., Topol, E.J., Weiner, M.P., Harismendy, O., Olson, J., Link, D.R. and Frazer, K.A. (2009b) Microdroplet-based PCR enrichment for large-scale targeted sequencing. Nat. Biotechnol. 27, 1025-1031.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 1025-1031
-
-
Tewhey, R.1
Warner, J.B.2
Nakano, M.3
Libby, B.4
Medkova, M.5
David, P.H.6
Kotsopoulos, S.K.7
Samuels, M.L.8
Hutchison, J.B.9
Larson, J.W.10
Topol, E.J.11
Weiner, M.P.12
Harismendy, O.13
Olson, J.14
Link, D.R.15
Frazer, K.A.16
-
29
-
-
67349179787
-
Massively parallel exon capture and library-free resequencing across 16 genomes
-
Turner, E.H., Lee, C.L., Ng, S.B., Nickerson, D.A. and Shendure, J. (2009) Massively parallel exon capture and library-free resequencing across 16 genomes. Nat. Methods, 6, 315-316.
-
(2009)
Nat. Methods
, vol.6
, pp. 315-316
-
-
Turner, E.H.1
Lee, C.L.2
Ng, S.B.3
Nickerson, D.A.4
Shendure, J.5
-
30
-
-
77955392793
-
Plant responses to cold: transcriptome analysis of wheat
-
Winfield, M.O., Lu, C.G., Wilson, I.D., Coghill, J.A. and Edwards, K.J. (2010) Plant responses to cold: transcriptome analysis of wheat. Plant Biotechnol. J. 8, 749-771.
-
(2010)
Plant Biotechnol. J.
, vol.8
, pp. 749-771
-
-
Winfield, M.O.1
Lu, C.G.2
Wilson, I.D.3
Coghill, J.A.4
Edwards, K.J.5
|