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Volumn 91, Issue , 2013, Pages 101-133

Detecting DNA-protein interactions in living cells - ChIP approach

Author keywords

[No Author keywords available]

Indexed keywords

DNA; PROTEIN;

EID: 84879381892     PISSN: 18761623     EISSN: None     Source Type: Book Series    
DOI: 10.1016/B978-0-12-411637-5.00004-4     Document Type: Chapter
Times cited : (9)

References (84)
  • 2
    • 0036850346 scopus 로고    scopus 로고
    • Deciphering the transcriptional histone acetylation code for a human gene
    • T. Agalioti, G. Chen, and D. Thanos Deciphering the transcriptional histone acetylation code for a human gene Cell 111 3 2002 381 392
    • (2002) Cell , vol.111 , Issue.3 , pp. 381-392
    • Agalioti, T.1    Chen, G.2    Thanos, D.3
  • 3
    • 70350502843 scopus 로고    scopus 로고
    • Environmental education for providers and patients - What's a doctor to do?
    • P.S. Auerbach Environmental education for providers and patients - What's a doctor to do? Wilderness & Environmental Medicine 20 3 2009 197 198
    • (2009) Wilderness & Environmental Medicine , vol.20 , Issue.3 , pp. 197-198
    • Auerbach, P.S.1
  • 4
    • 34249026300 scopus 로고    scopus 로고
    • High-resolution profiling of histone methylations in the human genome
    • A. Barski, S. Cuddapah, K. Cui, T.Y. Roh, D.E. Schones, and Z. Wang High-resolution profiling of histone methylations in the human genome Cell 129 4 2007 823 837
    • (2007) Cell , vol.129 , Issue.4 , pp. 823-837
    • Barski, A.1    Cuddapah, S.2    Cui, K.3    Roh, T.Y.4    Schones, D.E.5    Wang, Z.6
  • 7
    • 40649089223 scopus 로고    scopus 로고
    • Analysis of epigenetic modifications of chromatin at specific gene loci by native chromatin immunoprecipitation of nucleosomes isolated using hydroxyapatite chromatography
    • M. Brand, S. Rampalli, C.P. Chaturvedi, and F.J. Dilworth Analysis of epigenetic modifications of chromatin at specific gene loci by native chromatin immunoprecipitation of nucleosomes isolated using hydroxyapatite chromatography Nature Protocols 3 3 2008 398 409
    • (2008) Nature Protocols , vol.3 , Issue.3 , pp. 398-409
    • Brand, M.1    Rampalli, S.2    Chaturvedi, C.P.3    Dilworth, F.J.4
  • 8
    • 84856756676 scopus 로고    scopus 로고
    • Polycomb associates genome-wide with a specific RNA polymerase II variant, and regulates metabolic genes in ESCs
    • E. Brookes, I. de Santiago, D. Hebenstreit, K.J. Morris, T. Carroll, and S.Q. Xie Polycomb associates genome-wide with a specific RNA polymerase II variant, and regulates metabolic genes in ESCs Cell Stem Cell 10 2 2012 157 170
    • (2012) Cell Stem Cell , vol.10 , Issue.2 , pp. 157-170
    • Brookes, E.1    De Santiago, I.2    Hebenstreit, D.3    Morris, K.J.4    Carroll, T.5    Xie, S.Q.6
  • 9
    • 0033290964 scopus 로고    scopus 로고
    • An in vivo UV crosslinking assay that detects DNA binding by sequence-specific transcription factors
    • A. Carr, and M.D. Biggin An in vivo UV crosslinking assay that detects DNA binding by sequence-specific transcription factors Methods in Molecular Biology 119 1999 497 508
    • (1999) Methods in Molecular Biology , vol.119 , pp. 497-508
    • Carr, A.1    Biggin, M.D.2
  • 11
    • 2442695407 scopus 로고    scopus 로고
    • Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription
    • S. Chambeyron, and W.A. Bickmore Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription Genes & Development 18 10 2004 1119 1130
    • (2004) Genes & Development , vol.18 , Issue.10 , pp. 1119-1130
    • Chambeyron, S.1    Bickmore, W.A.2
  • 12
    • 44649117905 scopus 로고    scopus 로고
    • Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
    • X. Chen, H. Xu, P. Yuan, F. Fang, M. Huss, and V.B. Vega Integration of external signaling pathways with the core transcriptional network in embryonic stem cells Cell 133 6 2008 1106 1117
    • (2008) Cell , vol.133 , Issue.6 , pp. 1106-1117
    • Chen, X.1    Xu, H.2    Yuan, P.3    Fang, F.4    Huss, M.5    Vega, V.B.6
  • 13
    • 0036144598 scopus 로고    scopus 로고
    • Association of human TFIID-promoter complexes with silenced mitotic chromatin in vivo
    • R. Christova, and T. Oelgeschlager Association of human TFIID-promoter complexes with silenced mitotic chromatin in vivo Nature Cell Biology 4 1 2002 79 82
    • (2002) Nature Cell Biology , vol.4 , Issue.1 , pp. 79-82
    • Christova, R.1    Oelgeschlager, T.2
  • 14
    • 0033617334 scopus 로고    scopus 로고
    • Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle- and developmentally regulated promoter
    • M.P. Cosma, T. Tanaka, and K. Nasmyth Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle- and developmentally regulated promoter Cell 97 3 1999 299 311
    • (1999) Cell , vol.97 , Issue.3 , pp. 299-311
    • Cosma, M.P.1    Tanaka, T.2    Nasmyth, K.3
  • 15
    • 30044449116 scopus 로고    scopus 로고
    • Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)
    • G.E. Crawford, I.E. Holt, J. Whittle, B.D. Webb, D. Tai, and S. Davis Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS) Genome Research 16 1 2006 123 131
    • (2006) Genome Research , vol.16 , Issue.1 , pp. 123-131
    • Crawford, G.E.1    Holt, I.E.2    Whittle, J.3    Webb, B.D.4    Tai, D.5    Davis, S.6
  • 17
    • 79551509739 scopus 로고    scopus 로고
    • The next generation: Using new sequencing technologies to analyse gene regulation
    • R. Cullum, O. Alder, and P.A. Hoodless The next generation: Using new sequencing technologies to analyse gene regulation Respirology 16 2 2011 210 222
    • (2011) Respirology , vol.16 , Issue.2 , pp. 210-222
    • Cullum, R.1    Alder, O.2    Hoodless, P.A.3
  • 18
    • 44949138461 scopus 로고    scopus 로고
    • A rapid micro chromatin immunoprecipitation assay (microChIP)
    • J.A. Dahl, and P. Collas A rapid micro chromatin immunoprecipitation assay (microChIP) Nature Protocols 3 6 2008 1032 1045
    • (2008) Nature Protocols , vol.3 , Issue.6 , pp. 1032-1045
    • Dahl, J.A.1    Collas, P.2
  • 19
    • 0037083376 scopus 로고    scopus 로고
    • Capturing chromosome conformation
    • J. Dekker, K. Rippe, M. Dekker, and N. Kleckner Capturing chromosome conformation Science 295 5558 2002 1306 1311
    • (2002) Science , vol.295 , Issue.5558 , pp. 1306-1311
    • Dekker, J.1    Rippe, K.2    Dekker, M.3    Kleckner, N.4
  • 20
    • 84865761246 scopus 로고    scopus 로고
    • Modeling gene expression using chromatin features in various cellular contexts
    • X. Dong, M.C. Greven, A. Kundaje, S. Djebali, J.B. Brown, and C. Cheng Modeling gene expression using chromatin features in various cellular contexts Genome Biology 13 9 2012 R53
    • (2012) Genome Biology , vol.13 , Issue.9 , pp. 53
    • Dong, X.1    Greven, M.C.2    Kundaje, A.3    Djebali, S.4    Brown, J.B.5    Cheng, C.6
  • 21
    • 46949098742 scopus 로고    scopus 로고
    • A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
    • T.A. Down, V.K. Rakyan, D.J. Turner, P. Flicek, H. Li, and E. Kulesha A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis Nature Biotechnology 26 7 2008 779 785
    • (2008) Nature Biotechnology , vol.26 , Issue.7 , pp. 779-785
    • Down, T.A.1    Rakyan, V.K.2    Turner, D.J.3    Flicek, P.4    Li, H.5    Kulesha, E.6
  • 22
  • 23
    • 68949213578 scopus 로고    scopus 로고
    • Insights from genomic profiling of transcription factors
    • P.J. Farnham Insights from genomic profiling of transcription factors Nature Reviews Genetics 10 9 2009 605 616
    • (2009) Nature Reviews Genetics , vol.10 , Issue.9 , pp. 605-616
    • Farnham, P.J.1
  • 24
    • 63849091245 scopus 로고    scopus 로고
    • Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses
    • M.J. Fullwood, C.L. Wei, E.T. Liu, and Y. Ruan Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses Genome Research 19 4 2009 521 532
    • (2009) Genome Research , vol.19 , Issue.4 , pp. 521-532
    • Fullwood, M.J.1    Wei, C.L.2    Liu, E.T.3    Ruan, Y.4
  • 26
    • 67649524640 scopus 로고    scopus 로고
    • Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements)
    • P.G. Giresi, and J.D. Lieb Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements) Methods 48 3 2009 233 239
    • (2009) Methods , vol.48 , Issue.3 , pp. 233-239
    • Giresi, P.G.1    Lieb, J.D.2
  • 27
    • 62249133709 scopus 로고    scopus 로고
    • Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
    • M. Guttman, I. Amit, M. Garber, C. French, M.F. Lin, and D. Feldser Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals Nature 458 7235 2009 223 227
    • (2009) Nature , vol.458 , Issue.7235 , pp. 223-227
    • Guttman, M.1    Amit, I.2    Garber, M.3    French, C.4    Lin, M.F.5    Feldser, D.6
  • 28
    • 77952148742 scopus 로고    scopus 로고
    • Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
    • M. Guttman, M. Garber, J.Z. Levin, J. Donaghey, J. Robinson, and X. Adiconis Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs Nature Biotechnology 28 5 2010 503 510
    • (2010) Nature Biotechnology , vol.28 , Issue.5 , pp. 503-510
    • Guttman, M.1    Garber, M.2    Levin, J.Z.3    Donaghey, J.4    Robinson, J.5    Adiconis, X.6
  • 29
    • 34548565667 scopus 로고    scopus 로고
    • Quantitative analysis of chromosome conformation capture assays (3C-qPCR)
    • H. Hagege, P. Klous, C. Braem, E. Splinter, J. Dekker, and G. Cathala Quantitative analysis of chromosome conformation capture assays (3C-qPCR) Nature Protocols 2 7 2007 1722 1733
    • (2007) Nature Protocols , vol.2 , Issue.7 , pp. 1722-1733
    • Hagege, H.1    Klous, P.2    Braem, C.3    Splinter, E.4    Dekker, J.5    Cathala, G.6
  • 30
    • 0036923739 scopus 로고    scopus 로고
    • Dynamics of enhancer-promoter communication during differentiation- induced gene activation
    • P. Hatzis, and I. Talianidis Dynamics of enhancer-promoter communication during differentiation-induced gene activation Molecular cell 10 6 2002 1467 1477
    • (2002) Molecular Cell , vol.10 , Issue.6 , pp. 1467-1477
    • Hatzis, P.1    Talianidis, I.2
  • 31
    • 77953808473 scopus 로고    scopus 로고
    • Next-generation genomics: An integrative approach
    • R.D. Hawkins, G.C. Hon, and B. Ren Next-generation genomics: An integrative approach Nature Reviews Genetics 11 7 2010 476 486
    • (2010) Nature Reviews Genetics , vol.11 , Issue.7 , pp. 476-486
    • Hawkins, R.D.1    Hon, G.C.2    Ren, B.3
  • 32
    • 0024003456 scopus 로고
    • A direct link between core histone acetylation and transcriptionally active chromatin
    • T.R. Hebbes, A.W. Thorne, and C. Crane-Robinson A direct link between core histone acetylation and transcriptionally active chromatin The EMBO journal 7 5 1988 1395 1402
    • (1988) The EMBO Journal , vol.7 , Issue.5 , pp. 1395-1402
    • Hebbes, T.R.1    Thorne, A.W.2    Crane-Robinson, C.3
  • 34
    • 84934437354 scopus 로고    scopus 로고
    • CLIP: Crosslinking and immunoprecipitation of in vivo RNA targets of RNA-binding proteins
    • K.B. Jensen, and R.B. Darnell CLIP: Crosslinking and immunoprecipitation of in vivo RNA targets of RNA-binding proteins Methods in Molecular Biology 488 2008 85 98
    • (2008) Methods in Molecular Biology , vol.488 , pp. 85-98
    • Jensen, K.B.1    Darnell, R.B.2
  • 35
    • 55749094855 scopus 로고    scopus 로고
    • An integrated software system for analyzing ChIP-chip and ChIP-seq data
    • H. Ji, H. Jiang, W. Ma, D.S. Johnson, R.M. Myers, and W.H. Wong An integrated software system for analyzing ChIP-chip and ChIP-seq data Nature Biotechnology 26 11 2008 1293 1300
    • (2008) Nature Biotechnology , vol.26 , Issue.11 , pp. 1293-1300
    • Ji, H.1    Jiang, H.2    Ma, W.3    Johnson, D.S.4    Myers, R.M.5    Wong, W.H.6
  • 37
    • 79955838994 scopus 로고    scopus 로고
    • A short survey of computational analysis methods in analysing ChIP-seq data
    • H. Kim, J. Kim, H. Selby, D. Gao, T. Tong, and T.L. Phang A short survey of computational analysis methods in analysing ChIP-seq data Human Genomics 5 2 2011 117 123
    • (2011) Human Genomics , vol.5 , Issue.2 , pp. 117-123
    • Kim, H.1    Kim, J.2    Selby, H.3    Gao, D.4    Tong, T.5    Phang, T.L.6
  • 38
    • 0033542436 scopus 로고    scopus 로고
    • Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme
    • L. Kuras, and K. Struhl Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme Nature 399 6736 1999 609 613
    • (1999) Nature , vol.399 , Issue.6736 , pp. 609-613
    • Kuras, L.1    Struhl, K.2
  • 40
  • 41
    • 84655173624 scopus 로고    scopus 로고
    • Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells
    • B.K. Lee, A.A. Bhinge, A. Battenhouse, R.M. McDaniell, Z. Liu, and L. Song Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells Genome Research 22 1 2012 9 24
    • (2012) Genome Research , vol.22 , Issue.1 , pp. 9-24
    • Lee, B.K.1    Bhinge, A.A.2    Battenhouse, A.3    McDaniell, R.M.4    Liu, Z.5    Song, L.6
  • 42
    • 84866108697 scopus 로고    scopus 로고
    • Genome-wide studies of CCCTC-binding factor (CTCF) and cohesin provide insight into chromatin structure and regulation
    • B.K. Lee, and V.R. Iyer Genome-wide studies of CCCTC-binding factor (CTCF) and cohesin provide insight into chromatin structure and regulation The Journal of Biological Chemistry 287 37 2012 30906 30913
    • (2012) The Journal of Biological Chemistry , vol.287 , Issue.37 , pp. 30906-30913
    • Lee, B.K.1    Iyer, V.R.2
  • 43
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • H. Li, J. Ruan, and R. Durbin Mapping short DNA sequencing reads and calling variants using mapping quality scores Genome Research 18 11 2008 1851 1858
    • (2008) Genome Research , vol.18 , Issue.11 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 44
    • 70349873824 scopus 로고    scopus 로고
    • Comprehensive mapping of long-range interactions reveals folding principles of the human genome
    • E. Lieberman-Aiden, N.L. van Berkum, L. Williams, M. Imakaev, T. Ragoczy, and A. Telling Comprehensive mapping of long-range interactions reveals folding principles of the human genome Science 326 5950 2009 289 293
    • (2009) Science , vol.326 , Issue.5950 , pp. 289-293
    • Lieberman-Aiden, E.1    Van Berkum, N.L.2    Williams, L.3    Imakaev, M.4    Ragoczy, T.5    Telling, A.6
  • 45
    • 79957448422 scopus 로고    scopus 로고
    • The analysis of ChIP-Seq data
    • W. Ma, and W.H. Wong The analysis of ChIP-Seq data Methods in Enzymology 497 2011 51 73
    • (2011) Methods in Enzymology , vol.497 , pp. 51-73
    • Ma, W.1    Wong, W.H.2
  • 47
    • 2642544592 scopus 로고    scopus 로고
    • Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter
    • R. Metivier, G. Penot, M.R. Hubner, G. Reid, H. Brand, and M. Kos Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter Cell 115 6 2003 751 763
    • (2003) Cell , vol.115 , Issue.6 , pp. 751-763
    • Metivier, R.1    Penot, G.2    Hubner, M.R.3    Reid, G.4    Brand, H.5    Kos, M.6
  • 48
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies - The next generation
    • M.L. Metzker Sequencing technologies - The next generation Nature Reviews Genetics 11 1 2010 31 46
    • (2010) Nature Reviews Genetics , vol.11 , Issue.1 , pp. 31-46
    • Metzker, M.L.1
  • 50
    • 33644853802 scopus 로고    scopus 로고
    • Histone modifications: Signalling receptors and potential elements of a heritable epigenetic code
    • K.P. Nightingale, L.P. O'Neill, and B.M. Turner Histone modifications: Signalling receptors and potential elements of a heritable epigenetic code Current Opinion in Genetics & Development 16 2 2006 125 136
    • (2006) Current Opinion in Genetics & Development , vol.16 , Issue.2 , pp. 125-136
    • Nightingale, K.P.1    O'Neill, L.P.2    Turner, B.M.3
  • 51
    • 79959360046 scopus 로고    scopus 로고
    • Application of ChIP-Seq and related techniques to the study of immune function
    • D.L. Northrup, and K. Zhao Application of ChIP-Seq and related techniques to the study of immune function Immunity 34 6 2011 830 842
    • (2011) Immunity , vol.34 , Issue.6 , pp. 830-842
    • Northrup, D.L.1    Zhao, K.2
  • 52
    • 0041668072 scopus 로고    scopus 로고
    • Immunoprecipitation of native chromatin: NChIP
    • L.P. O'Neill, and B.M. Turner Immunoprecipitation of native chromatin: NChIP Methods 31 1 2003 76 82
    • (2003) Methods , vol.31 , Issue.1 , pp. 76-82
    • O'Neill, L.P.1    Turner, B.M.2
  • 53
    • 33745549658 scopus 로고    scopus 로고
    • Epigenetic characterization of the early embryo with a chromatin immunoprecipitation protocol applicable to small cell populations
    • L.P. O'Neill, M.D. VerMilyea, and B.M. Turner Epigenetic characterization of the early embryo with a chromatin immunoprecipitation protocol applicable to small cell populations Nature Genetics 38 7 2006 835 841
    • (2006) Nature Genetics , vol.38 , Issue.7 , pp. 835-841
    • O'Neill, L.P.1    Vermilyea, M.D.2    Turner, B.M.3
  • 54
    • 0034161329 scopus 로고    scopus 로고
    • Mapping chromosomal proteins in vivo by formaldehyde-crosslinked- chromatin immunoprecipitation
    • V. Orlando Mapping chromosomal proteins in vivo by formaldehyde- crosslinked-chromatin immunoprecipitation Trends in Biochemical Sciences 25 3 2000 99 104
    • (2000) Trends in Biochemical Sciences , vol.25 , Issue.3 , pp. 99-104
    • Orlando, V.1
  • 55
    • 0031080378 scopus 로고    scopus 로고
    • Analysis of chromatin structure by in vivo formaldehyde cross-linking
    • V. Orlando, H. Strutt, and R. Paro Analysis of chromatin structure by in vivo formaldehyde cross-linking Methods 11 2 1997 205 214
    • (1997) Methods , vol.11 , Issue.2 , pp. 205-214
    • Orlando, V.1    Strutt, H.2    Paro, R.3
  • 57
    • 70349312354 scopus 로고    scopus 로고
    • ChIP-seq: Advantages and challenges of a maturing technology
    • P.J. Park ChIP-seq: Advantages and challenges of a maturing technology Nature Reviews Genetics 10 10 2009 669 680
    • (2009) Nature Reviews Genetics , vol.10 , Issue.10 , pp. 669-680
    • Park, P.J.1
  • 58
    • 38449084678 scopus 로고    scopus 로고
    • Analysis of RNA:protein interactions in vivo: Identification of RNA-binding partners of nuclear factor 90
    • A.M. Parrott, M.R. Walsh, and M.B. Mathews Analysis of RNA:protein interactions in vivo: Identification of RNA-binding partners of nuclear factor 90 Methods in Enzymology 429 2007 243 260
    • (2007) Methods in Enzymology , vol.429 , pp. 243-260
    • Parrott, A.M.1    Walsh, M.R.2    Mathews, M.B.3
  • 59
    • 0025740935 scopus 로고
    • Crosslinking proteins to nucleic acids by ultraviolet laser irradiation
    • I.G. Pashev, S.I. Dimitrov, and D. Angelov Crosslinking proteins to nucleic acids by ultraviolet laser irradiation Trends in Biochemical Sciences 16 9 1991 323 326
    • (1991) Trends in Biochemical Sciences , vol.16 , Issue.9 , pp. 323-326
    • Pashev, I.G.1    Dimitrov, S.I.2    Angelov, D.3
  • 60
    • 84873020117 scopus 로고    scopus 로고
    • ChIP-exo method for identifying genomic location of DNA-binding proteins with near-single-nucleotide accuracy
    • H.S. Rhee, and B.F. Pugh ChIP-exo method for identifying genomic location of DNA-binding proteins with near-single-nucleotide accuracy Current Protocols in Molecular Biology 100 2012 21.24.1 21.24.14
    • (2012) Current Protocols in Molecular Biology , vol.100 , pp. 21241-212414
    • Rhee, H.S.1    Pugh, B.F.2
  • 61
    • 34547633677 scopus 로고    scopus 로고
    • Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing
    • G. Robertson, M. Hirst, M. Bainbridge, M. Bilenky, Y. Zhao, and T. Zeng Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing Nature Methods 4 8 2007 651 657
    • (2007) Nature Methods , vol.4 , Issue.8 , pp. 651-657
    • Robertson, G.1    Hirst, M.2    Bainbridge, M.3    Bilenky, M.4    Zhao, Y.5    Zeng, T.6
  • 62
    • 84856008906 scopus 로고    scopus 로고
    • Differential oestrogen receptor binding is associated with clinical outcome in breast cancer
    • C.S. Ross-Innes, R. Stark, A.E. Teschendorff, K.A. Holmes, H.R. Ali, and M.J. Dunning Differential oestrogen receptor binding is associated with clinical outcome in breast cancer Nature 481 7381 2012 389 393
    • (2012) Nature , vol.481 , Issue.7381 , pp. 389-393
    • Ross-Innes, C.S.1    Stark, R.2    Teschendorff, A.E.3    Holmes, K.A.4    Ali, H.R.5    Dunning, M.J.6
  • 64
    • 61849139645 scopus 로고    scopus 로고
    • Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts
    • J.R. Sanford, X. Wang, M. Mort, N. Vanduyn, D.N. Cooper, and S.D. Mooney Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts Genome Research 19 3 2009 381 394
    • (2009) Genome Research , vol.19 , Issue.3 , pp. 381-394
    • Sanford, J.R.1    Wang, X.2    Mort, M.3    Vanduyn, N.4    Cooper, D.N.5    Mooney, S.D.6
  • 65
    • 84865800494 scopus 로고    scopus 로고
    • The long-range interaction landscape of gene promoters
    • A. Sanyal, B.R. Lajoie, G. Jain, and J. Dekker The long-range interaction landscape of gene promoters Nature 489 7414 2012 109 113
    • (2012) Nature , vol.489 , Issue.7414 , pp. 109-113
    • Sanyal, A.1    Lajoie, B.R.2    Jain, G.3    Dekker, J.4
  • 66
    • 84862777766 scopus 로고    scopus 로고
    • Inhibition of the LSD1 (KDM1A) demethylase reactivates the all-trans-retinoic acid differentiation pathway in acute myeloid leukemia
    • T. Schenk, W.C. Chen, S. Gollner, L. Howell, L. Jin, and K. Hebestreit Inhibition of the LSD1 (KDM1A) demethylase reactivates the all-trans-retinoic acid differentiation pathway in acute myeloid leukemia Nature Medicine 18 4 2012 605 611
    • (2012) Nature Medicine , vol.18 , Issue.4 , pp. 605-611
    • Schenk, T.1    Chen, W.C.2    Gollner, S.3    Howell, L.4    Jin, L.5    Hebestreit, K.6
  • 67
    • 77449127799 scopus 로고    scopus 로고
    • MBD-isolated Genome Sequencing provides a high-throughput and comprehensive survey of DNA methylation in the human genome
    • D. Serre, B.H. Lee, and A.H. Ting MBD-isolated Genome Sequencing provides a high-throughput and comprehensive survey of DNA methylation in the human genome Nucleic Acids Research 38 2 2010 391 399
    • (2010) Nucleic Acids Research , vol.38 , Issue.2 , pp. 391-399
    • Serre, D.1    Lee, B.H.2    Ting, A.H.3
  • 69
    • 0023948705 scopus 로고
    • Mapping protein-DNA interactions in vivo with formaldehyde: Evidence that histone H4 is retained on a highly transcribed gene
    • M.J. Solomon, P.L. Larsen, and A. Varshavsky Mapping protein-DNA interactions in vivo with formaldehyde: Evidence that histone H4 is retained on a highly transcribed gene Cell 53 6 1988 937 947
    • (1988) Cell , vol.53 , Issue.6 , pp. 937-947
    • Solomon, M.J.1    Larsen, P.L.2    Varshavsky, A.3
  • 70
    • 80053539409 scopus 로고    scopus 로고
    • Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
    • L. Song, Z. Zhang, L.L. Grasfeder, A.P. Boyle, P.G. Giresi, and B.K. Lee Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity Genome Research 21 10 2011 1757 1767
    • (2011) Genome Research , vol.21 , Issue.10 , pp. 1757-1767
    • Song, L.1    Zhang, Z.2    Grasfeder, L.L.3    Boyle, A.P.4    Giresi, P.G.5    Lee, B.K.6
  • 71
    • 0024848016 scopus 로고
    • Laser-induced crosslinking of histones to DNA in chromatin and core particles: Implications in studying histone-DNA interactions
    • V. Stefanovsky, S.I. Dimitrov, V.R. Russanova, D. Angelov, and I.G. Pashev Laser-induced crosslinking of histones to DNA in chromatin and core particles: Implications in studying histone-DNA interactions Nucleic Acids Research 17 23 1989 10069 10081
    • (1989) Nucleic Acids Research , vol.17 , Issue.23 , pp. 10069-10081
    • Stefanovsky, V.1    Dimitrov, S.I.2    Russanova, V.R.3    Angelov, D.4    Pashev, I.G.5
  • 73
    • 66149192669 scopus 로고    scopus 로고
    • How to map billions of short reads onto genomes
    • C. Trapnell, and S.L. Salzberg How to map billions of short reads onto genomes Nature Biotechnology 27 5 2009 455 457
    • (2009) Nature Biotechnology , vol.27 , Issue.5 , pp. 455-457
    • Trapnell, C.1    Salzberg, S.L.2
  • 74
    • 79959859350 scopus 로고    scopus 로고
    • Environmental sensing by chromatin: An epigenetic contribution to evolutionary change
    • B.M. Turner Environmental sensing by chromatin: An epigenetic contribution to evolutionary change FEBS Letters 585 13 2011 2032 2040
    • (2011) FEBS Letters , vol.585 , Issue.13 , pp. 2032-2040
    • Turner, B.M.1
  • 75
  • 77
    • 84866346035 scopus 로고    scopus 로고
    • Chromatin immunoprecipitation: Advancing analysis of nuclear hormone signaling
    • A. Vinckevicius, and D. Chakravarti Chromatin immunoprecipitation: Advancing analysis of nuclear hormone signaling Journal of Molecular Endocrinology 49 2 2012 R113 R123
    • (2012) Journal of Molecular Endocrinology , vol.49 , Issue.2
    • Vinckevicius, A.1    Chakravarti, D.2
  • 78
    • 46249112085 scopus 로고    scopus 로고
    • Combinatorial patterns of histone acetylations and methylations in the human genome
    • Z. Wang, C. Zang, J.A. Rosenfeld, D.E. Schones, A. Barski, and S. Cuddapah Combinatorial patterns of histone acetylations and methylations in the human genome Nature Genetics 40 7 2008 897 903
    • (2008) Nature Genetics , vol.40 , Issue.7 , pp. 897-903
    • Wang, Z.1    Zang, C.2    Rosenfeld, J.A.3    Schones, D.E.4    Barski, A.5    Cuddapah, S.6
  • 79
    • 0036024955 scopus 로고    scopus 로고
    • Identification of unknown target genes of human transcription factors using chromatin immunoprecipitation
    • A.S. Weinmann, and P.J. Farnham Identification of unknown target genes of human transcription factors using chromatin immunoprecipitation Methods 26 1 2002 37 47
    • (2002) Methods , vol.26 , Issue.1 , pp. 37-47
    • Weinmann, A.S.1    Farnham, P.J.2
  • 80
    • 0037080674 scopus 로고    scopus 로고
    • Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis
    • A.S. Weinmann, P.S. Yan, M.J. Oberley, T.H. Huang, and P.J. Farnham Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis Genes & Development 16 2 2002 235 244
    • (2002) Genes & Development , vol.16 , Issue.2 , pp. 235-244
    • Weinmann, A.S.1    Yan, P.S.2    Oberley, M.J.3    Huang, T.H.4    Farnham, P.J.5
  • 81
    • 84862171106 scopus 로고    scopus 로고
    • High throughput automated chromatin immunoprecipitation as a platform for drug screening and antibody validation
    • A.R. Wu, T.L. Kawahara, N.A. Rapicavoli, J. van Riggelen, E.H. Shroff, and L. Xu High throughput automated chromatin immunoprecipitation as a platform for drug screening and antibody validation Lab on a Chip 12 12 2012 2190 2198
    • (2012) Lab on A Chip , vol.12 , Issue.12 , pp. 2190-2198
    • Wu, A.R.1    Kawahara, T.L.2    Rapicavoli, N.A.3    Van Riggelen, J.4    Shroff, E.H.5    Xu, L.6
  • 82
    • 48949099045 scopus 로고    scopus 로고
    • Inferring causal relationships among different histone modifications and gene expression
    • H. Yu, S. Zhu, B. Zhou, H. Xue, and J.D. Han Inferring causal relationships among different histone modifications and gene expression Genome Research 18 8 2008 1314 1324
    • (2008) Genome Research , vol.18 , Issue.8 , pp. 1314-1324
    • Yu, H.1    Zhu, S.2    Zhou, B.3    Xue, H.4    Han, J.D.5
  • 83
    • 34047198759 scopus 로고    scopus 로고
    • In vivo dual cross-linking for identification of indirect DNA-associated proteins by chromatin immunoprecipitation
    • 696, 698
    • P.Y. Zeng, C.R. Vakoc, Z.C. Chen, G.A. Blobel, and S.L. Berger In vivo dual cross-linking for identification of indirect DNA-associated proteins by chromatin immunoprecipitation BioTechniques 41 6 2006 694 696, 698
    • (2006) BioTechniques , vol.41 , Issue.6 , pp. 694
    • Zeng, P.Y.1    Vakoc, C.R.2    Chen, Z.C.3    Blobel, G.A.4    Berger, S.L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.