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Volumn 10, Issue 6, 2002, Pages 1467-1477

Dynamics of enhancer-promoter communication during differentiation-induced gene activation

Author keywords

[No Author keywords available]

Indexed keywords

DEOXYRIBONUCLEASE I; DNA; PROTEIN; RNA POLYMERASE II; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR HNF 4ALPHA; UNCLASSIFIED DRUG;

EID: 0036923739     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1097-2765(02)00786-4     Document Type: Article
Times cited : (185)

References (51)
  • 1
    • 0033681250 scopus 로고    scopus 로고
    • Ordered recruitment of chromatin modifying and general transcription factors to the IFN-β promoter
    • Agalioti T., Lomvardas S., Parekh B., Yie J., Maniatis T., Thanos D. Ordered recruitment of chromatin modifying and general transcription factors to the IFN-β promoter. Cell. 103:2000;667-678.
    • (2000) Cell , vol.103 , pp. 667-678
    • Agalioti, T.1    Lomvardas, S.2    Parekh, B.3    Yie, J.4    Maniatis, T.5    Thanos, D.6
  • 2
    • 0033969766 scopus 로고    scopus 로고
    • TAFs revisited: More data reveal new twists and confirm old ideas
    • Albright S.R., Tjian R. TAFs revisited. more data reveal new twists and confirm old ideas Gene. 242:2000;1-13.
    • (2000) Gene , vol.242 , pp. 1-13
    • Albright, S.R.1    Tjian, R.2
  • 3
    • 0035445820 scopus 로고    scopus 로고
    • An enhancer element 6 kb upstream of the mouse HNF4alpha1 promoter is activated by glucocorticoids and liver-enriched transcription factors
    • Bailly A., Torres-Padilla M.E., Tinel A.P., Weiss M.C. An enhancer element 6 kb upstream of the mouse HNF4alpha1 promoter is activated by glucocorticoids and liver-enriched transcription factors. Nucleic Acids Res. 29:2001;3495-3505.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 3495-3505
    • Bailly, A.1    Torres-Padilla, M.E.2    Tinel, A.P.3    Weiss, M.C.4
  • 4
    • 0033540266 scopus 로고    scopus 로고
    • Regulation of gene expression by multiple forms of TFIID and other novel TAFII-containing complexes
    • Bell B., Tora L. Regulation of gene expression by multiple forms of TFIID and other novel TAFII-containing complexes. Exp. Cell Res. 246:1999;11-19.
    • (1999) Exp. Cell Res. , vol.246 , pp. 11-19
    • Bell, B.1    Tora, L.2
  • 5
    • 0032479079 scopus 로고    scopus 로고
    • Going the distance: A current view of enhancer action
    • Blackwood E.M., Kadonaga J.T. Going the distance. a current view of enhancer action Science. 281:1998;61-63.
    • (1998) Science , vol.281 , pp. 61-63
    • Blackwood, E.M.1    Kadonaga, J.T.2
  • 6
    • 0033215443 scopus 로고    scopus 로고
    • Looping versus linking: Toward a model for long-distance gene activation
    • Bulger M., Groudine M. Looping versus linking. toward a model for long-distance gene activation Genes Dev. 13:1999;2465-2477.
    • (1999) Genes Dev. , vol.13 , pp. 2465-2477
    • Bulger, M.1    Groudine, M.2
  • 7
    • 0028148776 scopus 로고
    • Disruption of the HNF-4 gene, expressed in visceral endoderm, leads to cell death in embryonic ectoderm and impaired gastrulation of mouse embryos
    • Chen W.S., Manova K., Weinstein D.C., Duncan S.A., Plump A.S., Prezioso V.R., Bachvarova R.F., Darnell J.E. Jr. Disruption of the HNF-4 gene, expressed in visceral endoderm, leads to cell death in embryonic ectoderm and impaired gastrulation of mouse embryos. Genes Dev. 8:1994;2466-2477.
    • (1994) Genes Dev. , vol.8 , pp. 2466-2477
    • Chen, W.S.1    Manova, K.2    Weinstein, D.C.3    Duncan, S.A.4    Plump, A.S.5    Prezioso, V.R.6    Bachvarova, R.F.7    Darnell J.E., Jr.8
  • 8
    • 0033388099 scopus 로고    scopus 로고
    • An early developmental transcription factor complex that is more stable on nucleosome core particles than on free DNA
    • Cirillo L.A., Zaret K.S. An early developmental transcription factor complex that is more stable on nucleosome core particles than on free DNA. Mol. Cell. 4:1999;961-969.
    • (1999) Mol. Cell , vol.4 , pp. 961-969
    • Cirillo, L.A.1    Zaret, K.S.2
  • 9
    • 0036184236 scopus 로고    scopus 로고
    • Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4
    • Cirillo L.A., Lin F.R., Cuesta I., Friedman D., Jarnik M., Zaret K.S. Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4. Mol. Cell. 9:2002;279-289.
    • (2002) Mol. Cell , vol.9 , pp. 279-289
    • Cirillo, L.A.1    Lin, F.R.2    Cuesta, I.3    Friedman, D.4    Jarnik, M.5    Zaret, K.S.6
  • 11
    • 0033936743 scopus 로고    scopus 로고
    • Functional gene expression domains: Defining the functional unit of eukaryotic gene regulation
    • Dillon N., Sabbattini P. Functional gene expression domains. defining the functional unit of eukaryotic gene regulation Bioessays. 22:2000;657-665.
    • (2000) Bioessays , vol.22 , pp. 657-665
    • Dillon, N.1    Sabbattini, P.2
  • 13
    • 0032820999 scopus 로고    scopus 로고
    • Distant liaisons: Long-range enhancer-promoter interactions in Drosophila
    • Dorsett D. Distant liaisons. long-range enhancer-promoter interactions in Drosophila Curr. Opin. Genet. Dev. 9:1999;505-514.
    • (1999) Curr. Opin. Genet. Dev. , vol.9 , pp. 505-514
    • Dorsett, D.1
  • 14
    • 0032584567 scopus 로고    scopus 로고
    • Regulation of a transcription factor network required for differentiation and metabolism
    • Duncan S.A., Navas M.A., Dufort D., Rossant J., Stoffel M. Regulation of a transcription factor network required for differentiation and metabolism. Science. 281:1998;692-695.
    • (1998) Science , vol.281 , pp. 692-695
    • Duncan, S.A.1    Navas, M.A.2    Dufort, D.3    Rossant, J.4    Stoffel, M.5
  • 15
    • 0034598936 scopus 로고    scopus 로고
    • Looping, linking, and chromatin activity: New insights into β-globin locus regulation
    • Engel J.D., Tanimoto K. Looping, linking, and chromatin activity. new insights into β-globin locus regulation Cell. 100:2000;499-502.
    • (2000) Cell , vol.100 , pp. 499-502
    • Engel, J.D.1    Tanimoto, K.2
  • 16
    • 0035814925 scopus 로고    scopus 로고
    • Chromatin remodeling enzymes: Who's on first?
    • Fry C.J., Peterson C.L. Chromatin remodeling enzymes. who's on first? Curr. Biol. 11:2001;185-197.
    • (2001) Curr. Biol. , vol.11 , pp. 185-197
    • Fry, C.J.1    Peterson, C.L.2
  • 18
    • 0023663887 scopus 로고
    • Position-independent, high-level expression of the human β-globin gene in transgenic mice
    • Grosveld F., van Assendelft G.B., Greaves D.R., Kollias G. Position-independent, high-level expression of the human β-globin gene in transgenic mice. Cell. 51:1987;975-985.
    • (1987) Cell , vol.51 , pp. 975-985
    • Grosveld, F.1    Van Assendelft, G.B.2    Greaves, D.R.3    Kollias, G.4
  • 19
    • 0035937419 scopus 로고    scopus 로고
    • Histone acetyltransferase complexes stabilize swi/snf binding to promoter nucleosomes
    • Hassan A.H., Neely K.E., Workman J.L. Histone acetyltransferase complexes stabilize swi/snf binding to promoter nucleosomes. Cell. 104:2001;817-827.
    • (2001) Cell , vol.104 , pp. 817-827
    • Hassan, A.H.1    Neely, K.E.2    Workman, J.L.3
  • 20
    • 0034796563 scopus 로고    scopus 로고
    • Regulatory mechanisms controlling human hepatocyte nuclear factor 4alpha gene expression
    • Hatzis P., Talianidis I. Regulatory mechanisms controlling human hepatocyte nuclear factor 4alpha gene expression. Mol. Cell. Biol. 21:2001;7320-7330.
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 7320-7330
    • Hatzis, P.1    Talianidis, I.2
  • 21
    • 0035141324 scopus 로고    scopus 로고
    • Hepatocyte nuclear factor 4alpha (nuclear receptor 2A1) is essential for maintenance of hepatic gene expression and lipid homeostasis
    • Hayhurst G.P., Lee Y.H., Lambert G., Ward J.M., Gonzalez F.J. Hepatocyte nuclear factor 4alpha (nuclear receptor 2A1) is essential for maintenance of hepatic gene expression and lipid homeostasis. Mol. Cell. Biol. 21:2001;1393-1403.
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 1393-1403
    • Hayhurst, G.P.1    Lee, Y.H.2    Lambert, G.3    Ward, J.M.4    Gonzalez, F.J.5
  • 22
    • 0034717183 scopus 로고    scopus 로고
    • Structure and function of a human TAFII250 double bromodomain module
    • Jacobson R.H., Ladurner A.G., King D.S., Tjian R. Structure and function of a human TAFII250 double bromodomain module. Science. 288:2000;1422-1425.
    • (2000) Science , vol.288 , pp. 1422-1425
    • Jacobson, R.H.1    Ladurner, A.G.2    King, D.S.3    Tjian, R.4
  • 23
    • 0034854577 scopus 로고    scopus 로고
    • Distinct mechanisms control RNA polymerase II recruitment to a tissue-specific locus control region and downstream promoter
    • Johnson K.D., Christensen H.M., Zhao B., Bresnick E.H. Distinct mechanisms control RNA polymerase II recruitment to a tissue-specific locus control region and downstream promoter. Mol. Cell. 8:2001;465-471.
    • (2001) Mol. Cell , vol.8 , pp. 465-471
    • Johnson, K.D.1    Christensen, H.M.2    Zhao, B.3    Bresnick, E.H.4
  • 24
    • 0034307008 scopus 로고    scopus 로고
    • Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription
    • Komarnitsky P., Cho E.J., Buratowski S. Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription. Genes Dev. 14:2000;2452-2460.
    • (2000) Genes Dev. , vol.14 , pp. 2452-2460
    • Komarnitsky, P.1    Cho, E.J.2    Buratowski, S.3
  • 25
    • 0030848766 scopus 로고    scopus 로고
    • Modulation of hepatic gene expression by hepatocyte nuclear factor 1
    • Ktistaki E., Talianidis I. Modulation of hepatic gene expression by hepatocyte nuclear factor 1. Science. 277:1997;109-112.
    • (1997) Science , vol.277 , pp. 109-112
    • Ktistaki, E.1    Talianidis, I.2
  • 26
    • 0028820158 scopus 로고
    • Recruitment of hepatocyte nuclear factor 4 into specific intranuclear compartments depends on tyrosine phosphorylation that affects its DNA-binding and transactivation potential
    • Ktistaki E., Ktistakis N.T., Papadogeorgaki E., Talianidis I. Recruitment of hepatocyte nuclear factor 4 into specific intranuclear compartments depends on tyrosine phosphorylation that affects its DNA-binding and transactivation potential. Proc. Natl. Acad. Sci. USA. 92:1995;9876-9880.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 9876-9880
    • Ktistaki, E.1    Ktistakis, N.T.2    Papadogeorgaki, E.3    Talianidis, I.4
  • 27
    • 0034667792 scopus 로고    scopus 로고
    • Orchestrated response: A symphony of transcription factors for gene control
    • Lemon B., Tjian R. Orchestrated response. a symphony of transcription factors for gene control Genes Dev. 14:2000;2551-2569.
    • (2000) Genes Dev. , vol.14 , pp. 2551-2569
    • Lemon, B.1    Tjian, R.2
  • 28
    • 0033215140 scopus 로고    scopus 로고
    • Locus control regions: Coming of age at a decade plus
    • Li Q., Harju S., Peterson K.R. Locus control regions. coming of age at a decade plus Trends Genet. 15:1999;403-408.
    • (1999) Trends Genet. , vol.15 , pp. 403-408
    • Li, Q.1    Harju, S.2    Peterson, K.R.3
  • 29
    • 0034090310 scopus 로고    scopus 로고
    • Mammalian hepatocyte differentiation requires the transcription factor HNF-4alpha
    • Li J., Ning G., Duncan S.A. Mammalian hepatocyte differentiation requires the transcription factor HNF-4alpha. Genes Dev. 14:2000;464-474.
    • (2000) Genes Dev. , vol.14 , pp. 464-474
    • Li, J.1    Ning, G.2    Duncan, S.A.3
  • 30
    • 0035929147 scopus 로고    scopus 로고
    • Nucleosome sliding via TBP DNA binding in vivo
    • Lomvardas S., Thanos D. Nucleosome sliding via TBP DNA binding in vivo. Cell. 106:2001;685-696.
    • (2001) Cell , vol.106 , pp. 685-696
    • Lomvardas, S.1    Thanos, D.2
  • 31
    • 0037178777 scopus 로고    scopus 로고
    • Modifying gene expression programs by altering core promoter chromatin architecture
    • Lomvardas S., Thanos D. Modifying gene expression programs by altering core promoter chromatin architecture. Cell. 110:2002;261-271.
    • (2002) Cell , vol.110 , pp. 261-271
    • Lomvardas, S.1    Thanos, D.2
  • 32
    • 0037007221 scopus 로고    scopus 로고
    • GAGA can mediate enhancer function in trans by linking two separate DNA molecules
    • Mahmoudi T., Katsani K.R., Verrijzer C.P. GAGA can mediate enhancer function in trans by linking two separate DNA molecules. EMBO J. 21:2002;1775-1781.
    • (2002) EMBO J. , vol.21 , pp. 1775-1781
    • Mahmoudi, T.1    Katsani, K.R.2    Verrijzer, C.P.3
  • 33
    • 0030219342 scopus 로고    scopus 로고
    • Regulation of beta-globin gene expression: Straightening out the locus
    • Martin D.I., Fiering S., Groudine M. Regulation of beta-globin gene expression. straightening out the locus Curr. Opin. Genet. Dev. 6:1996;488-495.
    • (1996) Curr. Opin. Genet. Dev. , vol.6 , pp. 488-495
    • Martin, D.I.1    Fiering, S.2    Groudine, M.3
  • 34
    • 0032533241 scopus 로고    scopus 로고
    • GATA6 regulates HNF4 and is required for differentiation of visceral endoderm in the mouse embryo
    • Morrisey E.E., Tang Z., Sigrist K., Lu M.M., Jiang F., Ip H.S., Parmacek M.S. GATA6 regulates HNF4 and is required for differentiation of visceral endoderm in the mouse embryo. Genes Dev. 12:1998;3579-3590.
    • (1998) Genes Dev. , vol.12 , pp. 3579-3590
    • Morrisey, E.E.1    Tang, Z.2    Sigrist, K.3    Lu, M.M.4    Jiang, F.5    Ip, H.S.6    Parmacek, M.S.7
  • 35
    • 0037154963 scopus 로고    scopus 로고
    • Cooperation between complexes that regulate chromatin structure and transcription
    • Narlikar G.J., Fan H.Y., Kingston R.E. Cooperation between complexes that regulate chromatin structure and transcription. Cell. 108:2002;475-487.
    • (2002) Cell , vol.108 , pp. 475-487
    • Narlikar, G.J.1    Fan, H.Y.2    Kingston, R.E.3
  • 36
    • 0035839110 scopus 로고    scopus 로고
    • Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundaries
    • Noma K., Allis C.D., Grewal S.I. Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundaries. Science. 293:2001;1150-1155.
    • (2001) Science , vol.293 , pp. 1150-1155
    • Noma, K.1    Allis, C.D.2    Grewal, S.I.3
  • 38
    • 0027209304 scopus 로고
    • An in vitro model for the analysis of intestinal brush border assembly. II. Changes in expression and localization of brush border proteins during cell contact-induced brush border assembly in Caco-2BBe cells
    • Peterson M.D., Bement W.M., Mooseker M.S. An in vitro model for the analysis of intestinal brush border assembly. II. Changes in expression and localization of brush border proteins during cell contact-induced brush border assembly in Caco-2BBe cells. J. Cell Sci. 105:1993;461-472.
    • (1993) J. Cell Sci. , vol.105 , pp. 461-472
    • Peterson, M.D.1    Bement, W.M.2    Mooseker, M.S.3
  • 39
    • 0022447855 scopus 로고
    • Gene regulation by proteins acting nearby and at a distance
    • Ptashne M. Gene regulation by proteins acting nearby and at a distance. Nature. 322:1986;697-701.
    • (1986) Nature , vol.322 , pp. 697-701
    • Ptashne, M.1
  • 40
    • 0033485539 scopus 로고    scopus 로고
    • Quantitative comparison of DNA looping in vitro and in vivo: Chromatin increases effective DNA flexibility at short distances
    • Ringrose L., Chabanis S., Angrand P.O., Woodroofe C., Stewart A.F. Quantitative comparison of DNA looping in vitro and in vivo. chromatin increases effective DNA flexibility at short distances EMBO J. 18:1999;6630-6641.
    • (1999) EMBO J. , vol.18 , pp. 6630-6641
    • Ringrose, L.1    Chabanis, S.2    Angrand, P.O.3    Woodroofe, C.4    Stewart, A.F.5
  • 41
    • 0036208492 scopus 로고    scopus 로고
    • Formation of the androgen receptor transcription complex
    • Shang Y., Myers M., Brown M. Formation of the androgen receptor transcription complex. Mol. Cell. 9:2002;601-610.
    • (2002) Mol. Cell , vol.9 , pp. 601-610
    • Shang, Y.1    Myers, M.2    Brown, M.3
  • 42
    • 0025690311 scopus 로고
    • Liver-enriched transcription factor HNF-4 is a novel member of the steroid hormone receptor superfamily
    • Sladek F.M., Zhong W.M., Lai E., Darnell J.E. Jr. Liver-enriched transcription factor HNF-4 is a novel member of the steroid hormone receptor superfamily. Genes Dev. 4:1990;2353-2365.
    • (1990) Genes Dev. , vol.4 , pp. 2353-2365
    • Sladek, F.M.1    Zhong, W.M.2    Lai, E.3    Darnell J.E., Jr.4
  • 43
    • 0037040550 scopus 로고    scopus 로고
    • Coordination of PIC assembly and chromatin remodeling during differentiation-induced gene activation
    • Soutoglou E., Talianidis I. Coordination of PIC assembly and chromatin remodeling during differentiation-induced gene activation. Science. 295:2002;1901-1904.
    • (2002) Science , vol.295 , pp. 1901-1904
    • Soutoglou, E.1    Talianidis, I.2
  • 44
    • 0033636892 scopus 로고    scopus 로고
    • Acetylation regulates transcription factor activity at multiple levels
    • Soutoglou E., Katrakili N., Talianidis I. Acetylation regulates transcription factor activity at multiple levels. Mol. Cell. 5:2000;745-751.
    • (2000) Mol. Cell , vol.5 , pp. 745-751
    • Soutoglou, E.1    Katrakili, N.2    Talianidis, I.3
  • 45
    • 0035901512 scopus 로고    scopus 로고
    • Transcription factor-dependent regulation of CBP and P/CAF histone acetyltransferase activity
    • Soutoglou E., Viollet B., Vaxillaire M., Yaniv M., Pontoglio M., Talianidis I. Transcription factor-dependent regulation of CBP and P/CAF histone acetyltransferase activity. EMBO J. 20:2001;1984-1992.
    • (2001) EMBO J. , vol.20 , pp. 1984-1992
    • Soutoglou, E.1    Viollet, B.2    Vaxillaire, M.3    Yaniv, M.4    Pontoglio, M.5    Talianidis, I.6
  • 46
    • 0033601096 scopus 로고    scopus 로고
    • Putting boundaries on silence
    • Sun F.L., Elgin S.C. Putting boundaries on silence. Cell. 99:1999;459-462.
    • (1999) Cell , vol.99 , pp. 459-462
    • Sun, F.L.1    Elgin, S.C.2
  • 48
    • 0037087628 scopus 로고    scopus 로고
    • A unified nomenclature for TATA box binding protein (TBP)-associated factors (TAFs) involved in RNA polymerase II transcription
    • Tora L. A unified nomenclature for TATA box binding protein (TBP)-associated factors (TAFs) involved in RNA polymerase II transcription. Genes Dev. 16:2002;673-675.
    • (2002) Genes Dev. , vol.16 , pp. 673-675
    • Tora, L.1
  • 49
    • 0035694922 scopus 로고    scopus 로고
    • Purification and functional characterization of a histone H3-lysine 4-specific methyltransferase
    • Wang H., Cao R., Xia L., Erdjument-Bromage H., Borchers C., Tempst P., Zhang Y. Purification and functional characterization of a histone H3-lysine 4-specific methyltransferase. Mol. Cell. 8:2001;1207-1217.
    • (2001) Mol. Cell , vol.8 , pp. 1207-1217
    • Wang, H.1    Cao, R.2    Xia, L.3    Erdjument-Bromage, H.4    Borchers, C.5    Tempst, P.6    Zhang, Y.7
  • 50
    • 0036467996 scopus 로고    scopus 로고
    • Insulators: Many functions, many mechanisms
    • West A.G., Gaszner M., Felsenfeld G. Insulators. many functions, many mechanisms Genes Dev. 16:2002;271-288.
    • (2002) Genes Dev. , vol.16 , pp. 271-288
    • West, A.G.1    Gaszner, M.2    Felsenfeld, G.3
  • 51
    • 0027960532 scopus 로고
    • Tissue-specific regulation of mouse hepatocyte nuclear factor 4 expression
    • Zhong W., Mirkovitch J., Darnell J.E. Jr. Tissue-specific regulation of mouse hepatocyte nuclear factor 4 expression. Mol. Cell. Biol. 14:1994;7276-7284.
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 7276-7284
    • Zhong, W.1    Mirkovitch, J.2    Darnell J.E., Jr.3


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