DNA nanoarchitectonics: Assembled DNA at interfaces

Langmuir

Volumn 29, Issue 24, 2013, Pages 7344-7353

  Howorka, Stefan ^a  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

INTERFACIAL LAYER; NANOARCHITECTURES; NANOPARTICLE LATTICE; NANOPATTERNING; NANOSCALE BUILDING BLOCKS; POSSIBLE FUTURES; RESEARCH DEVELOPMENT; SUBSTRATE INTERFACE;

BIOLOGICAL MATERIALS; CYTOLOGY; INTERFACES (MATERIALS); NANOTECHNOLOGY; SURFACE PROPERTIES;

DNA;

DNA; NANOMATERIAL;

CHEMISTRY; REVIEW;

DNA; NANOSTRUCTURES;

EID: 84879177405     PISSN: 07437463     EISSN: 15205827     Source Type: Journal    
DOI: 10.1021/la3045785     Document Type: Review

References (153)

1. Sakakibara, K.; Hill, J. P.; Ariga, K. Thin-film-based nanoarchitectures for soft matter: controlled assemblies into two-dimensional worlds Small 2011, 7, 1288-1308
2. Hazen, R. M.; Sholl, D. S. Chiral selection on inorganic crystalline surfaces Nat. Mater. 2003, 2, 367-374
3. Love, J. C.; Estroff, L. A.; Kriebel, J. K.; Nuzzo, R. G.; Whitesides, G. M. Self-assembled monolayers of thiolates on metals as a form of nanotechnology Chem. Rev. 2005, 105, 1103-1169
4. Tong, W.; Song, X.; Gao, C. Layer-by-layer assembly of microcapsules and their biomedical applications Chem. Soc. Rev. 2012, 41, 6103-6124
5. Brubaker, C. E.; Messersmith, P. B. The present and future of biologically inspired adhesive interfaces and materials Langmuir 2012, 28, 2200-2205
6. Bermudez, V. M.; Berry, A. D.; Kim, H.; Pique, A. Functionalization of indium tin oxide Langmuir 2006, 22, 11113-11125
7. Zharnikov, M.; Golzhauser, A.; Grunze, M. Preparation and characterization of self-assembled monolayers on indium tin oxide Langmuir 2000, 16, 6208-6215
8. Yan, C.; Zharnikov, M.; Golzhauser, A.; Grunze, M. Preparation and characterization of self-assembled monolayers on indium tin oxide Langmuir 2000, 16, 6208-6215
9. Appleyard, S. F. J.; Day, S. R.; Pickford, R. D.; Willis, M. R. Organic electroluminescent devices: enhanced carrier injection using SAM derivatized ITO electrodes J. Mater. Chem. 2000, 10, 169-173
10. Baker, L. A.; Bird, S. P. Nanopores: a makeover for membranes Nat. Nanotechnol. 2008, 3, 73-74
11. McPherson, T.; Kidane, A.; Szleifer, I.; Park, K. Prevention of protein adsorption by tethered poly(ethylene oxide) layers: experiments and single-chain mean-field analysis Langmuir 1998, 14, 176-186
12. Delamarche, E.; Donzel, C.; Kamounah, F. S.; Wolf, H.; Geissler, M.; Stutz, R.; Schmidt-Winkel, P.; Michel, B.; Mathieu, H. J.; Schaumburg, K. Microcontact printing using poly(dimethylsiloxane) stamps hydrophilized by poly(ethylene oxide) silanes Langmuir 2003, 19, 8749-8758
13. Papra, A.; Bernard, A.; Juncker, D.; Larsen, N. B.; Michel, B.; Delamarche, E. Microfluidic networks made of poly(dimethylsiloxane), Si, and Au coated with polyethylene glycol for patterning proteins onto surfaces Langmuir 2001, 17, 4090-4095
14. Germanier, Y.; Tosatti, S.; Broggini, N.; Textor, G.; Buser, D. Enhanced bone apposition around biofunctionalized sandblasted and acid-etched titanium implant surfaces. A histomorphometric study in miniature pigs Clin. Oral Implants Res. 2006, 17, 251-257
15. Pike, D. B.; Cai, S.; Pomraning, K. R.; Firpo, M. A.; Fisher, R. J.; Shu, X. Z.; Prestwich, G. D.; Peattie, R. A. Heparin-regulated release of growth factors in vitro and angiogenic response in vivo to implanted hyaluronan hydrogels containing VEGF and bFGF Biomaterials 2006, 27, 5242-5251
16. Caro, A.; Humblot, V.; Methivier, C.; Minier, M.; Salmain, M.; Pradier, C. M. Grafting of lysozyme and/or poly(ethylene glycol) to prevent biofilm growth on stainless steel surfaces J. Phys. Chem. B 2009, 113, 2101-2109
17. Anikin, K.; Rocker, C.; Wittemann, A.; Wiedenmann, J.; Ballauff, M.; Nienhaus, G. U. Polyelectrolyte-mediated protein adsorption: fluorescent protein binding to individual polyelectrolyte nanospheres J. Phys. Chem. B 2005, 109, 5418-5420
18. Schlapak, R.; Pammer, P.; Armitage, D.; Zhu, R.; Hinterdorfer, P.; Vaupel, M.; Fruhwirth, T.; Howorka, S. Glass surfaces grafted with high-density poly(ethylene glycol) as substrates for DNA oligonucleotide microarrays Langmuir 2006, 22, 277-285
19. Schlapak, R.; Armitage, D.; Saucedo-Zeni, N.; Hohage, M.; Howorka, S. Dense passivating poly(ethylene glycol) films on indium tin oxide substrates Langmuir 2007, 23, 10244-10253
20. Mirkin, C. A.; Niemeyer, C. M. Nanobiotechnology II: More Concepts and Applications; John Wiley & Sons: Chichester, U.K., 2007.
21. Niemeyer, C. M.; Mirkin, C. A. Nanobiotechnology: Concepts, Applications and Perspectives; John Wiley & Sons: Chichester, U.K., 2004.
22. Christman, K. L.; Enriquez-Rios, V. D.; Maynard, H. D. Nanopatterning proteins and peptides Soft Matter 2006, 2, 928-939
23. Ariga, K.; Lee, M. V.; Mori, T.; Yu, X. Y.; Hill, J. P. Two-dimensional nanoarchitectonics based on self-assembly Adv. Colloid Interface Sci. 2010, 154, 20-29
24. Biswas, A.; Bayer, I. S.; Biris, A. S.; Wang, T.; Dervishi, E.; Faupel, F. Advances in top-down and bottom-up surface nanofabrication: techniques, applications & future prospects Adv. Colloid Interface Sci. 2012, 170, 2-27
25. Rothemund, P. W. Folding DNA to create nanoscale shapes and patterns Nature 2006, 440, 297-302
26. Andersen, E. S.; Dong, M.; Nielsen, M. M.; Jahn, K.; Subramani, R.; Mamdouh, W.; Golas, M. M.; Sander, B.; Stark, H.; Oliveira, C. L.; Pedersen, J. S.; Birkedal, V.; Besenbacher, F.; Gothelf, K. V.; Kjems, J. Self-assembly of a nanoscale DNA box with a controllable lid Nature 2009, 459, 73-76
27. Nangreave, J.; Han, D. R.; Liu, Y.; Yan, H. DNA origami: a history and current perspective Curr. Opin. Chem. Biol. 2010, 14, 608-615
28. Seeman, N. C. Nanomaterials based on DNA Annu. Rev. Biochem. 2010, 79, 65-87
29. Sacca, B.; Niemeyer, C. M. DNA origami: the art of folding DNA Angew. Chem., Int. Ed. 2012, 51, 58-66
30. Teller, C.; Willner, I. Functional nucleic acid nanostructures and DNA machines Curr. Opin. Biotechnol. 2010, 21, 376-391
31. Lin, C.; Yan, H. DNA nanotechnology: a cascade of activity Nat. Nanotechnol. 2009, 4, 249-254
32. Wilner, O. I.; Weizmann, Y.; Gill, R.; Lioubashevski, O.; Freeman, R.; Willner, I. Enzyme cascades activated on topologically programmed DNA scaffolds Nat. Nanotechnol. 2009, 4, 249-254
33. Aldaye, F. A.; Palmer, A. L.; Sleiman, H. F. Assembling materials with DNA as the guide Science 2008, 321, 1795-1799
34. Wickham, S. F.; Bath, J.; Katsuda, Y.; Endo, M.; Hidaka, K.; Sugiyama, H.; Turberfield, A. J. A DNA-based molecular motor that can navigate a network of tracks Nat. Nanotechnol. 2012, 7, 169-173
35. Fu, J. L.; Liu, M. H.; Liu, Y.; Yan, H. Spatially-interactive biomolecular networks organized by nucleic acid nanostructures Acc. Chem. Res. 2012, 45, 1215-1226
36. Hung, A. M.; Noh, H.; Cha, J. N. Recent advances in DNA-based directed assembly on surfaces Nanoscale 2010, 2, 2530-2537
37. Moyano, D. F.; Rotello, V. M. Nano meets biology: structure and function at the nanoparticle interface Langmuir 2011, 27, 10376-10385
38. Bellini, T.; Cerbino, R.; Zanchetta, G. DNA-based soft phases Top. Curr. Chem. 2012, 318, 225-279
39. Howorka, S. Rationally engineering natural protein assemblies in nanobiotechnology Curr. Opin. Biotechnol. 2011, 22, 485-491
40. Tomalia, D. A.; Naylor, A. M.; Goddard, W. A. Starburst dendrimers: molecular-level control of size, shape, surface chemistry, topology, and flexibility from atoms to macroscopic matter Angew. Chem., Int. Ed. 2003, 29, 138-175
41. Lee, C. C.; MacKay, J. A.; Frechet, J. M.; Szoka, F. C. Designing dendrimers for biological applications Nat. Biotechnol. 2005, 23, 1517-1526
42. Douglas, S. M.; Marblestone, A. H.; Teerapittayanon, S.; Vazquez, A.; Church, G. M.; Shih, W. M. Rapid prototyping of 3D DNA-origami shapes with caDNAno Nucleic Acids Res. 2009, 37, 5001-5006
43. Nel, A. E.; Madler, L.; Velegol, D.; Xia, T.; Hoek, E. M. V.; Somasundaran, P.; Klaessig, F.; Castranova, V.; Thompson, M. Understanding biophysicochemical interactions at the nano-bio interface Nat. Mater. 2009, 8, 543-557
44. Vainrub, A.; Pettitt, B. M. Accurate prediction of binding thermodynamics for DNA on surfaces J. Phys. Chem. B 2011, 115, 13300-13303
45. Mirmomtaz, E.; Castronovo, M.; Grunwald, C.; Bano, F.; Scaini, D.; Ensafi, A. A.; Scoles, G.; Casalis, L. Quantitative study of the effect of coverage on the hybridization efficiency of surface-bound DNA nanostructures Nano Lett. 2008, 8, 4134-4139
46. Lindahl, T.; Nyberg, B. Rate of depurination of native deoxyribonucleic acid Biochemistry 1972, 11, 3610-3618
47. Schlapak, R.; Armitage, D.; Saucedo-Zeni, N.; Chrzanowski, W.; Hohage, M.; Caruana, D.; Howorka, S. Selective and tunable passivation of surfaces Soft Matt. 2009, 5, 613-621
48. Qamhieh, K.; Nylander, T.; Ainalem, M.-L. Analytical model study of dendrimer/DNA complexes Biomacromolecules 2009, 10, 1720-1726
49. Banwell, E. F.; Abelardo, E. S.; Adams, D. J.; Birchall, M. A.; Corrigan, A.; Donald, A. M.; Kirkland, M.; Serpell, L. C.; Butler, M. F.; Woolfson, D. N. Rational design and application of responsive alpha-helical peptide hydrogels Nat. Mater. 2009, 8, 596-600
50. Padilla, J. E.; Colovos, C.; Yeates, T. O. Nanohedra: using symmetry to design self assembling protein cages, layers, crystals, and filaments Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 2217-2221
51. Papapostolou, D.; Howorka, S. Engineering and exploiting protein assemblies in synthetic biology Mol. BioSyst. 2009, 5, 723-732
52. Jeon, S. I.; Andrade, J. D. Protein surface interactions in the presence of polyethylene oxide 0.2. Effect of protein size J. Colloid Interface Sci. 1991, 142, 159-166
53. Jeon, S. I.; Lee, J. H.; Andrade, J. D.; Degennes, P. G. Protein surface interactions in the presence of polyethylene oxide 0.1. Simplified theory J. Colloid Interface Sci. 1991, 142, 149-158
54. Schlapak, R.; Caruana, D.; Armitage, D.; Howorka, S. Semipermeable poly(ethylene glycol) films: the relationship between permeability and molecular structure of polymer chains Soft Matter 2009, 5, 4104-4112
55. Satulovsky, J.; Carignano, M. A.; Szleifer, I. Kinetic and thermodynamic control of protein adsorption Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 9037-9041
56. Liu, M.; Liu, G. Y. Hybridization with nanostructures of single-stranded DNA Langmuir 2005, 21, 1972-1978
57. Peterson, A. W.; Wolf, L. K.; Georgiadis, R. M. Hybridization of mismatched or partially matched DNA at surfaces J. Am. Chem. Soc. 2002, 124, 14601-14607
58. Castronovo, M.; Radovic, S.; Grunwald, C.; Casalis, L.; Morgante, M.; Scoles, G. Control of steric hindrance on restriction enzyme reactions with surface-bound DNA nanostructures Nano Lett. 2008, 8, 4140-4145
59. Mitchell, N.; Schlapak, R.; Kastner, M.; Armitage, D.; Chrzanowski, W.; Riener, J.; Hinterdorfer, P.; Ebner, A.; Howorka, S. A DNA nanostructure for the functional assembly of chemical groups at tuneable stoichiometry and defined nanoscale geometry Angew. Chem., Int. Ed. 2009, 48, 525-527
60. Schlapak, R.; Danzberger, J.; Armitage, D.; Morgan, D.; Ebner, A.; Hinterdorfer, P.; Pollheimer, P.; Gruber, H. J.; Schaffler, F.; Howorka, S. Nanoscale DNA tetrahedra improve biomolecular recognition on patterned surfaces Small 2012, 8, 89-97
61. Pei, H.; Wan, Y.; Li, J.; Hu, H. Y.; Su, Y.; Huang, Q.; Fan, C. H. Regenerable electrochemical immunological sensing at DNA nanostructure-decorated gold surfaces Chem. Commun. 2011, 47, 6254-6256
62. Wen, Y. L.; Pei, H.; Wan, Y.; Su, Y.; Huang, Q.; Song, S. P.; Fan, C. H. DNA nanostructure-decorated surfaces for enhanced aptamer-target binding and electrochemical cocaine sensors Anal. Chem. 2011, 83, 7418-7423
63. Goodman, R. P.; Berry, R. M.; Turberfield, A. J. The single-step synthesis of a DNA tetrahedron Chem. Commun. 2004, 1372-1373
64. Goodman, R. P.; Schaap, I. A.; Tardin, C. F.; Erben, C. M.; Berry, R. M.; Schmidt, C. F.; Turberfield, A. J. Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication Science 2005, 310, 1661-1665
65. Leitner, M.; Mitchell, N.; Kastner, M.; Schlapak, R.; Gruber, H. J.; Hinterdorfer, P.; Howorka, S.; Ebner, A. Single-molecule AFM characterization of individual chemically tagged DNA tetrahedra ACS Nano 2011, 5, 7048-7054
66. Lu, N.; Pei, H.; Ge, Z. L.; Simmons, C. R.; Yan, H.; Fan, C. H. Charge transport within a three-dimensional DNA nanostructure framework J. Am. Chem. Soc. 2012, 134, 13148-13151
67. Zhang, C.; Tian, C.; Li, X.; Qian, H.; Hao, C. H.; Jiang, W.; Mao, C. D. Reversibly switching the surface porosity of a DNA tetrahedron J. Am. Chem. Soc. 2012, 134, 11998-12001
68. Schmidtke, D. W.; Taylor, Z. R.; Patel, K.; Spain, T. G.; Keay, J. C.; Jernigen, J. D.; Sanchez, E. S.; Grady, B. P.; Johnson, M. B. Fabrication of protein dot arrays via particle lithography Langmuir 2009, 25, 10932-10938
69. Mendes, P. M.; Yeung, C. L.; Preece, J. A. Bio-nanopatterning of surfaces Nanoscale Res. Lett. 2007, 2, 373-384
70. Ding, J. D.; Huang, J. H.; Grater, S. V.; Corbellinl, F.; Rinck, S.; Bock, E.; Kemkemer, R.; Kessler, H.; Spatz, J. P. Impact of order and disorder in RGD nanopatterns on cell adhesion Nano Lett. 2009, 9, 1111-1116
71. Agheli, H.; Malmstrom, J.; Larrson, E. M.; Textor, M.; Sutherland, D. S. Large area protein nanopatterning for biological applications Nano Lett. 2006, 6, 1165-1171
72. Xu, W.; Wang, J. G.; Jacobsen, M. F.; Mura, M.; Yu, M.; Kelly, R. E. A.; Meng, Q. Q.; Laegsgaard, E.; Stensgaard, I.; Linderoth, T. R.; Kjems, J.; Kantorovich, L. N.; Gothelf, K. V.; Besenbacher, F. Supramolecular porous network formed by molecular recognition between chemically modified nucleobases guanine and cytosine Angew. Chem., Int. Ed. 2010, 49, 9373-9377
73. Bald, I.; Wang, Y. G.; Dong, M. D.; Rosen, C. B.; Ravnsbaek, J. B.; Zhuang, G. L.; Gothelf, K. V.; Wang, J. G.; Besenbacher, F. Control of self-assembled 2D nanostructures by methylation of guanine Small 2011, 7, 939-949
74. Qing, G. Y.; Xiong, H.; Seela, F.; Sun, T. L. Spatially Controlled DNA nanopatterns by ″click″ chemistry using oligonucleotides with different anchoring sites J. Am. Chem. Soc. 2010, 132, 15228-15232
75. Carneiro, K. M. M.; Aldaye, F. A.; Sleiman, H. F. Long-range assembly of DNA into nanofibers and highly ordered networks using a block copolymer approach J. Am. Chem. Soc. 2010, 132, 679-685
76. Fujibayashi, K.; Hariadi, R.; Park, S. H.; Winfree, E.; Murata, S. Toward reliable algorithmic self-assembly of DNA tiles: a fixed-width cellular automaton pattern Nano Lett. 2008, 8, 1791-1797
77. Le, J. D.; Pinto, Y.; Seeman, N. C.; Musier-Forsyth, K.; Taton, T. A.; Kiehl, R. A. DNA-templated self-assembly of metallic nanocomponent arrays on a surface Nano Lett. 2004, 4, 2343-2347
78. Zhang, J. P.; Liu, Y.; Ke, Y. G.; Yan, H. Periodic square-like gold nanoparticle arrays templated by self-assembled 2D DNA nanogrids on a surface Nano Lett. 2006, 6, 248-251
79. Sharma, J.; Ke, Y. G.; Lin, C. X.; Chhabra, R.; Wang, Q. B.; Nangreave, J.; Liu, Y.; Yan, H. DNA-tile-directed self-assembly of quantum dots into two-dimensional nanopatterns Angew. Chem., Int. Ed. 2008, 47, 5157-5159
80. Pinto, Y. Y.; Le, J. D.; Seeman, N. C.; Musier-Forsyth, K.; Taton, T. A.; Kiehl, R. A. Sequence-encoded self-assembly of multiple-nanocomponent arrays by 2D DNA scaffolding Nano Lett. 2005, 5, 2399-2402
81. Zheng, J. W.; Constantinou, P. E.; Micheel, C.; Alivisatos, A. P.; Kiehl, R. A.; Seeman, N. C. Two-dimensional nanoparticle arrays show the organizational power of robust DNA motifs Nano Lett. 2006, 6, 1502-1504
82. Park, S. H.; Yin, P.; Liu, Y.; Reif, J. H.; LaBean, T. H.; Yan, H. Programmable DNA self-assemblies for nanoscale organization of ligands and proteins Nano Lett. 2005, 5, 729-733
83. He, Y.; Tian, Y.; Ribbe, A. E.; Mao, C. D. Antibody nanoarrays with a pitch of similar to 20 nm J. Am. Chem. Soc. 2006, 128, 12664-12665
84. Chhabra, R.; Sharma, J.; Ke, Y. G.; Liu, Y.; Rinker, S.; Lindsay, S.; Yan, H. Spatially addressable multiprotein nanoarrays templated by aptamer-tagged DNA nanoarchitectures J. Am. Chem. Soc. 2007, 129, 10304-10305
85. Williams, B. A. R.; Lund, K.; Liu, Y.; Yan, H.; Chaput, J. C. Self-assembled peptide nanoarrays: an approach to studying protein-protein interactions Angew. Chem., Int. Ed. 2007, 46, 3051-3054
86. Park, S. H.; Pistol, C.; Ahn, S. J.; Reif, J. H.; Lebeck, A. R.; Dwyer, C.; LaBean, T. H. Finite-size, fully addressable DNA tile lattices formed by hierarchical assembly procedures Angew. Chem., Int. Ed. 2006, 43, 735-739
87. Tørring, T.; Voigt, N. V.; Nangreave, J.; Yan, H.; Gothelf, K. V. DNA origami: a quantum leap for self-assembly of complex structures Chem. Soc. Rev. 2011, 40, 5636-5646
88. Rinker, S.; Ke, Y. G.; Liu, Y.; Chhabra, R.; Yan, H. Self-assembled DNA nanostructures for distance-dependent multivalent ligand-protein binding Nat. Nanotechnol. 2008, 3, 418-422
89. Helmig, S.; Rotaru, A.; Arian, D.; Kovbasyuk, L.; Arnbjerg, J.; Ogilby, P. R.; Kjems, J.; Mokhir, A.; Besenbacher, F.; Gothelf, K. V. Single molecule atomic force microscopy studies of photosensitized singlet oxygen behavior on a DNA origami template ACS Nano 2010, 4, 7475-7480
90. Stephanopoulos, N.; Liu, M. H.; Tong, G. J.; Li, Z.; Liu, Y.; Yan, H.; Francis, M. B. Immobilization and one-dimensional arrangement of virus capsids with nanoscale precision using DNA origami Nano Lett. 2010, 10, 2714-2720
91. Sharma, J.; Chhabra, R.; Andersen, C. S.; Gothelf, K. V.; Yan, H.; Liu, Y. Toward reliable gold nanoparticle patterning on self-assembled DNA nanoscaffold J. Am. Chem. Soc. 2008, 130, 7820-7821
92. Shen, W. Q.; Zhong, H.; Neff, D.; Norton, M. L. NTA directed protein nanopatterning on DNA origami nanoconstructs J. Am. Chem. Soc. 2009, 131, 6660-6661
93. Sacca, B.; Meyer, R.; Erkelenz, M.; Kiko, K.; Arndt, A.; Schroeder, H.; Rabe, K. S.; Niemeyer, C. M. Orthogonal protein decoration of DNA origami Angew. Chem., Int. Ed. 2010, 49, 9378-9383
94. Gu, H. Z.; Chao, J.; Xiao, S. J.; Seeman, N. C. Dynamic patterning programmed by DNA tiles captured on a DNA origami substrate Nat. Nanotechnol. 2009, 4, 245-248
95. Lund, K.; Manzo, A. J.; Dabby, N.; Michelotti, N.; Johnson-Buck, A.; Nangreave, J.; Taylor, S.; Pei, R. J.; Stojanovic, M. N.; Walter, N. G.; Winfree, E.; Yan, H. Molecular robots guided by prescriptive landscapes Nature 2010, 465, 206-210
96. Wickham, S. F.; Endo, M.; Katsuda, Y.; Hidaka, K.; Bath, J.; Sugiyama, H.; Turberfield, A. J. Direct observation of stepwise movement of a synthetic molecular transporter Nat. Nanotechnol. 2011, 6, 166-169
97. Yun, J. M.; Kim, K. N.; Kim, J. Y.; Shin, D. O.; Lee, W. J.; Lee, S. H.; Lieberman, M.; Kim, S. O. DNA origami nanopatterning on chemically modified graphene Angew. Chem., Int. Ed. 2012, 51, 912-915
98. Gietl, A.; Holzmeister, P.; Grohmann, D.; Tinnefeld, P. DNA origami as biocompatible surface to match single-molecule and ensemble experiments Nucleic Acids Res. 2012, 40, e110
99. Zhao, Z.; Liu, Y.; Yan, H. Organizing DNA origami tiles into larger structures using preformed scaffold frames Nano Lett. 2011, 11, 2997-3002
100. Endo, M.; Sugita, T.; Katsuda, Y.; Hidaka, K.; Sugiyama, H. Programmed-assembly system using DNA jigsaw pieces Chem.-Eur. J. 2010, 16, 5362-5368
101. Rundqvist, J.; Hoh, J. H.; Haviland, D. B. Directed immobilization of protein-coated nanospheres to nanometer-scale patterns fabricated by electron beam lithography of poly(ethylene glycol) self-assembled monolayers Langmuir 2006, 22, 5100-5107
102. Michel, R.; Reviakine, I.; Sutherland, D.; Fokas, C.; Csucs, G.; Danuser, G.; Spencer, N. D.; Textor, M. A novel approach to produce biologically relevant chemical patterns at the nanometer scale: selective molecular assembly patterning combined with colloidal lithography Langmuir 2002, 18, 8580-8586
103. Reynolds, N.; Tucker, J. D.; Davison, P. A.; Timney, J. A.; Hunter, C. N.; Leggett, G. J. Site-specific immobilization and micrometer and nanometer scale photopatterning of yellow fluorescent protein on glass surfaces J. Am. Chem. Soc. 2009, 131, 896-897
104. Lata, S.; Reichel, A.; Brock, R.; Tampe, R.; Piehler, J. High-affinity adaptors for switchable recognition of histidine-tagged proteins J. Am. Chem. Soc. 2005, 127, 10205-10215
105. Schlapak, R.; Danzberger, J.; Haselgrubler, T.; Hinterdorfer, P.; Schaffler, F.; Howorka, S. Painting with biomolecules at the nanoscale: biofunctionalization with tunable surface densities Nano Lett. 2012, 12, 1983-1989
106. Truskett, V. N.; Watts, M. P. C. Trends in imprint lithography for biological applications Trends Biotechnol. 2006, 24, 312-317
107. Huck, W. T. S.; Li, H. W.; Muir, B. V. O.; Fichet, G. Nanocontact printing: a route to sub-50-nm-scale chemical and biological patterning Langmuir 2003, 19, 1963-1965
108. Schmid, H.; Michel, B. Siloxane polymers for high-resolution, high-accuracy soft lithography Macromolecules 2000, 33, 3042-3049
109. Mirkin, C. A.; Ginger, D. S.; Zhang, H. The evolution of dip-pen nanolithography Angew. Chem., Int. Ed. 2004, 43, 30-45
110. Valiokas, R.; Rakickas, T.; Gavutis, M.; Reichel, A.; Piehler, J.; Liedberg, B. Protein-protein interactions in reversibly assembled nanopatterns Nano Lett. 2008, 8, 3369-3375
111. Lenhert, S.; Sekula, S.; Fuchs, J.; Weg-Remers, S.; Nagel, P.; Schuppler, S.; Fragala, J.; Theilacker, N.; Franueb, M.; Wingren, C.; Ellmark, P.; Borrebaeck, C. A. K.; Mirkin, C. A.; Fuchs, H. Multiplexed lipid dip-pen nanolithography on subcellular scales for the templating of functional proteins and cell culture Small 2008, 4, 1785-1793
112. Tinazli, A.; Piehler, J.; Beuttler, M.; Guckenberger, R.; Tampe, R. Native protein nanolithography that can write, read and erase Nat. Nanotechnol. 2007, 2, 220-225
113. Bruckbauer, A.; Ying, L.; Rothery, A. M.; Shevchuk, A. I.; Abell, C.; Korchev, Y. E.; Klenerman, D. Writing with DNA and protein using a nanopipet for controlled delivery J. Am. Chem. Soc. 2002, 124, 8810-8811
114. Kufer, S. K.; Puchner, E. M.; Gumpp, H.; Liedl, T.; Gaub, H. E. Single-molecule cut-and-paste surface assembly Science 2008, 319, 594-596
115. Moller, M.; Spatz, J. P.; Herzog, T.; Mossmer, S.; Ziemann, P. Micellar inorganic-polymer hybrid systems-a tool for nanolithography Adv. Mater. 1999, 11, 149-153
116. Pammer, P.; Schlapak, R.; Sonnleitner, M.; Ebner, A.; Zhu, R.; Hinterdorfer, P.; Höglinger, O.; Schindler, H. G.; Howorka, S. Nanopatterning of biomolecules with microscale beads ChemPhysChem 2005, 6, 900-903
117. Park, S. Y.; Lytton-Jean, A. K. R.; Lee, B.; Weigand, S.; Schatz, G. C.; Mirkin, C. A. DNA-programmable nanoparticle crystallization Nature 2008, 451, 553-556
118. Kim, H. J.; Roh, Y.; Hong, B. Selective formation of a latticed nanostructure with the precise alignment of DNA-templated gold nanowires Langmuir 2010, 26, 18315-18319
119. Kershner, R. J.; Bozano, L. D.; Micheel, C. M.; Hung, A. M.; Fornof, A. R.; Cha, J. N.; Rettner, C. T.; Bersani, M.; Frommer, J.; Rothemund, P. W. K.; Wallraff, G. M. Placement and orientation of individual DNA shapes on lithographically patterned surfaces Nat. Nanotechnol. 2009, 4, 557-561
120. Hung, A. M.; Micheel, C. M.; Bozano, L. D.; Osterbur, L. W.; Wallraff, G. M.; Cha, J. N. Large-area spatially ordered arrays of gold nanoparticles directed by lithographically confined DNA origami Nat. Nanotechnol. 2010, 5, 121-126
121. Grainger, D. W. Geometric sorting boards Nat. Nanotechnol. 2009, 4, 543-544
122. Pearson, A. C.; Pound, E.; Woolley, A. T.; Linford, M. R.; Harb, J. N.; Davis, R. C. Chemical alignment of DNA origami to block copolymer patterned arrays of 5 nm gold nanoparticles Nano Lett. 2011, 11, 1981-1987
123. Ding, B. Q.; Wu, H.; Xu, W.; Zhao, Z. A.; Liu, Y.; Yu, H. B.; Yan, H. Interconnecting gold islands with DNA origami nanotubes Nano Lett. 2010, 10, 5065-5069
124. Nykypanchuk, D.; Maye, M. M.; van der Lelie, D.; Gang, O. DNA-guided crystallization of colloidal nanoparticles Nature 2008, 451, 549-552
125. Browne, K. P.; Grzybowski, B. A. Controlling the properties of self-assembled monolayers by substrate curvature Langmuir 2011, 27, 1246-1250
126. Kira, A.; Kim, H.; Yasuda, K. Contribution of nanoscale curvature to number density of immobilized DNA on gold nanoparticles Langmuir 2009, 25, 1285-1288
127. Prigodich, A. E.; Lee, O. S.; Daniel, W. L.; Seferos, D. S.; Schatz, G. C.; Mirkin, C. A. Tailoring DNA structure to increase target hybridization kinetics on surfaces J. Am. Chem. Soc. 2010, 132, 16296-16296
128. Suzuki, K.; Hosokawa, K.; Maeda, M. Controlling the number and positions of oligonucleotides on gold nanoparticle surfaces J. Am. Chem. Soc. 2009, 131, 7518-7519
129. Cutler, J. I.; Zhang, K.; Zheng, D.; Auyeung, E.; Prigodich, A. E.; Mirkin, C. A. Polyvalent nucleic acid nanostructures J. Am. Chem. Soc. 2011, 133, 9254-9257
130. Pu, S. Y.; Zinchenko, A. A.; Murata, S. DNA-assisted ″double- templating″ approach for the construction of hollow meshed inorganic nanoshells Langmuir 2011, 27, 5009-5013
131. Fan, J. A.; He, Y.; Bao, K.; Wu, C. H.; Bao, J. M.; Schade, N. B.; Manoharan, V. N.; Shvets, G.; Nordlander, P.; Liu, D. R.; Capasso, F. DNA-enabled self-assembly of plasmonic nanoclusters Nano Lett. 2011, 11, 4859-4864
132. Cigler, P.; Lytton-Jean, A. K. R.; Anderson, D. G.; Finn, M. G.; Park, S. Y. DNA-controlled assembly of a NaTl lattice structure from gold nanoparticles and protein nanoparticles Nat. Mater. 2010, 9, 918-922
133. Noh, H.; Hung, A. M.; Cha, J. N. Surface-driven DNA assembly of binary cubic 3D nanocrystal superlattices Small 2011, 7, 3021-3025
134. Lalander, C. H.; Zheng, Y.; Dhuey, S.; Cabrini, S.; Bach, U. DNA-directed self-assembly of gold nanoparticles onto nanopatterned surfaces: controlled placement of individual nanoparticles into regular arrays ACS Nano 2010, 4, 6153-6161
135. Onses, M. S.; Pathak, P.; Liu, C. C.; Cerrina, F.; Nealey, P. F. Localization of multiple DNA sequences on nanopatterns ACS Nano 2011, 5, 7899-7909
136. Hill, H. D.; Hurst, S. J.; Mirkin, C. A. Curvature-induced base pair ″slipping″ effects in DNA-nanoparticle hybridization Nano Lett. 2009, 9, 1283-1283
137. Kim, A. J.; Scarlett, R.; Biancaniello, P. L.; Sinno, T.; Crocker, J. C. Probing interfacial equilibration in microsphere crystals formed by DNA-directed assembly Nat. Mater. 2009, 8, 52-55
138. Ma, N.; Sargent, E. H.; Kelley, S. O. One-step DNA-programmed growth of luminescent and biofunctionalized nanocrystals Nat. Nanotechnol. 2009, 4, 121-125
139. Liu, M.; Zentgraf, T.; Liu, Y.; Bartal, G.; Zhang, X. Light-driven nanoscale plasmonic motors Nat. Nanotechnol. 2010, 5, 570-573
140. Goodman, R. P.; Heilemann, M.; Doose, S.; Erben, C. M.; Kapanidis, A. N.; Turberfield, A. J. Reconfigurable, braced, three-dimensional DNA nanostructures Nat. Nanotechnol. 2008, 3, 93-96
141. Yang, Y.; Liu, G.; Liu, H. J.; Li, D.; Fan, C. H.; Liu, D. S. An Electrochemically actuated reversible DNA switch Nano Lett. 2010, 10, 1393-1397
142. Nandivadaa, H.; Rossb, A. M.; Lahanna, J. Special issue on stimuli-responsive materials Prog. Polym. Sci. 2009, 35, 141-154
143. Kaiser, W.; Rant, U. Conformations of end-tethered DNA molecules on gold surfaces: influences of applied electric potential, electrolyte screening, and temperature J. Am. Chem. Soc. 2010, 132, 7935-7945
144. Kelley, S. O.; Barton, J. K.; Jackson, N. M.; McPherson, L. D.; Potter, A. B.; Spain, E. M.; Allen, M. J.; Hill, M. G. Orienting DNA helices on gold using applied electric fields Langmuir 1998, 13, 6781-6784
145. Ge, B.; Huang, Y. C.; Sen, D.; Yu, H.-Z. A Robust electronic switch made of immobilized duplex/quadruplex DNA Angew. Chem., Int. Ed. 2010, 49, 9965-9967
146. Yang, X.; Wang, Q.; Wang, K.; Tan, W.; Yao, J.; Li, H. Electrical switching of DNA monolayers investigated by surface plasmon resonance Langmuir 2006, 22, 5654-5659
147. Y., M.; Luo, C.; Deng, W.; Jin, G.; Yu, X.; Zhang, Z.; Ouyang, Q.; Chen, R.; D., Y. Reversibly switchable DNA nanocompartment on surfaces Nucleic Acids Res. 2004, 32, e144
148. Koyfman, A. Y.; Braun, G. B.; Reich, N. O. Cell-targeted self-assembled DNA nanostructures J. Am. Chem. Soc. 2009, 131, 14237-14239
149. Mei, Q.; Wei, X.; Su, F.; Liu, Y.; Youngbull, C.; Johnson, R.; Lindsay, S.; Yan, H.; Meldrum, D. Stability of DNA origami nanoarrays in cell lysate Nano Lett. 2011, 11, 1477-1482
150. Borjesson, K.; Lundberg, E. P.; Woller, J. G.; Norden, B.; Albinsson, B. Soft-surface DNA nanotechnology: DNA constructs anchored and aligned to lipid membrane Angew. Chem., Int. Ed. 2011, 50, 8312-8315
151. Cui, L.; Chen, D. Y.; Zhu, L. Conformation transformation determined by different self-assembled phases in a DNA complex with cationic polyhedral oligomeric silsesquioxane lipid ACS Nano 2008, 2, 921-927
152. Chhabra, R.; Sharma, J.; Liu, Y.; Rinker, S.; Yan, H. DNA self-assembly for nanomedicine Adv. Drug Delivery Rev. 2010, 62, 617-625
153. Ke, Y.; Lindsay, S.; Chang, Y.; Liu, Y.; Yan, H. Self-assembled water-soluble nucleic acid probe tiles for label-free RNA hybridization assays Science 2008, 319, 180-183