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Volumn 21, Issue 4, 2010, Pages 376-391

Functional nucleic acid nanostructures and DNA machines

Author keywords

[No Author keywords available]

Indexed keywords

APTAMERS; BASE SEQUENCES; BIOSENSING; CATALYTIC PROPERTIES; DNA DEVICES; DNA STRUCTURE; DNAZYME; FUNCTIONAL INFORMATION; FUNCTIONAL PROPERTIES; G-QUADRUPLEXES; LOW MOLECULAR WEIGHT; MACROSCOPIC SURFACES; METAL-ION COMPLEXES; MICRO-OBJECTS; MOLECULAR TOOLS; SPECIFIC BINDING; STRUCTURAL INFORMATION; ULTRASENSITIVE DETECTION;

EID: 77956647571     PISSN: 09581669     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.copbio.2010.06.001     Document Type: Review
Times cited : (214)

References (74)
  • 1
    • 0036849582 scopus 로고    scopus 로고
    • Human telomeric DNA: G-quadruplex, i-motif and Watson-Crick double helix
    • Phan A.T., Mergny J. Human telomeric DNA: G-quadruplex, i-motif and Watson-Crick double helix. Nucleic Acids Res 2002, 30:4618-4625.
    • (2002) Nucleic Acids Res , vol.30 , pp. 4618-4625
    • Phan, A.T.1    Mergny, J.2
  • 5
    • 64349099137 scopus 로고    scopus 로고
    • Designer DNA nanoarchitectures
    • Lin C., Liu Y., Yan H. Designer DNA nanoarchitectures. Biochemistry 2009, 48:1663-1674.
    • (2009) Biochemistry , vol.48 , pp. 1663-1674
    • Lin, C.1    Liu, Y.2    Yan, H.3
  • 7
    • 63849279652 scopus 로고    scopus 로고
    • Aptamers as molecular tools for bioanalytical methods
    • Tombelli S., Mascini M. Aptamers as molecular tools for bioanalytical methods. Curr Opin Mol Ther 2009, 11:179-188.
    • (2009) Curr Opin Mol Ther , vol.11 , pp. 179-188
    • Tombelli, S.1    Mascini, M.2
  • 8
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • Ellington A.D., Szostak J.W. In vitro selection of RNA molecules that bind specific ligands. Nature 1990, 346:818-822.
    • (1990) Nature , vol.346 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 9
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk C., Gold L. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 1990, 249:505-510.
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 10
    • 70349786346 scopus 로고    scopus 로고
    • The chemical biology of aptamers
    • Mayer G. The chemical biology of aptamers. Angew Chem Int Ed 2009, 48:2672-2689.
    • (2009) Angew Chem Int Ed , vol.48 , pp. 2672-2689
    • Mayer, G.1
  • 11
    • 62649161589 scopus 로고    scopus 로고
    • Biologically inspired synthetic enzymes made from DNA
    • Schlosser K., Li Y. Biologically inspired synthetic enzymes made from DNA. Chem Biol 2009, 16:311-322.
    • (2009) Chem Biol , vol.16 , pp. 311-322
    • Schlosser, K.1    Li, Y.2
  • 12
    • 10044258525 scopus 로고    scopus 로고
    • Integrated nanoparticle-biomolecule hybrid systems: synthesis, properties, and applications
    • Katz E., Willner I. Integrated nanoparticle-biomolecule hybrid systems: synthesis, properties, and applications. Angew Chem Intl Ed 2004, 43:6042-6108.
    • (2004) Angew Chem Intl Ed , vol.43 , pp. 6042-6108
    • Katz, E.1    Willner, I.2
  • 13
    • 33846230982 scopus 로고    scopus 로고
    • Biomolecule-nanoparticle hybrids as functional units for nanobiotechnology
    • Baron R., Willner B., Willner I. Biomolecule-nanoparticle hybrids as functional units for nanobiotechnology. Chem Commun 2007, 323-332.
    • (2007) Chem Commun , pp. 323-332
    • Baron, R.1    Willner, B.2    Willner, I.3
  • 16
    • 66449109109 scopus 로고    scopus 로고
    • Self-assembly of enzymes on DNA scaffolds: en route to biocatalytic cascades and the synthesis of metallic nanowires
    • Wilner O.I., Shimron S., Weizmann Y., Wang Z., Willner I. Self-assembly of enzymes on DNA scaffolds: en route to biocatalytic cascades and the synthesis of metallic nanowires. Nano Lett 2009, 9:2040-2043.
    • (2009) Nano Lett , vol.9 , pp. 2040-2043
    • Wilner, O.I.1    Shimron, S.2    Weizmann, Y.3    Wang, Z.4    Willner, I.5
  • 18
    • 55549125931 scopus 로고    scopus 로고
    • Catch and release: DNA tweezers that can capture, hold, and release an object under control
    • Han X., Zhou Z., Yang F., Deng Z. Catch and release: DNA tweezers that can capture, hold, and release an object under control. J Am Chem Soc 2008, 130:14414-14415.
    • (2008) J Am Chem Soc , vol.130 , pp. 14414-14415
    • Han, X.1    Zhou, Z.2    Yang, F.3    Deng, Z.4
  • 19
    • 60349096938 scopus 로고    scopus 로고
    • Self-contained photonically-controlled dna tweezers
    • Ogura Y., Nishimura T., Tanida J. Self-contained photonically-controlled dna tweezers. Appl Phys Exp 2009, 2:025004.
    • (2009) Appl Phys Exp , vol.2 , pp. 025004
    • Ogura, Y.1    Nishimura, T.2    Tanida, J.3
  • 20
    • 71949128677 scopus 로고    scopus 로고
    • PH-stimulated concurrent mechanical activation of two DNA " Tweezers" A " SET-RESET" logic gate system
    • Elbaz J., Wang Z., Orbach R., Willner I. pH-stimulated concurrent mechanical activation of two DNA " Tweezers" A " SET-RESET" logic gate system. Nano Lett 2009, 9:4510-4514.
    • (2009) Nano Lett , vol.9 , pp. 4510-4514
    • Elbaz, J.1    Wang, Z.2    Orbach, R.3    Willner, I.4
  • 21
    • 4444298687 scopus 로고    scopus 로고
    • A synthetic DNA walker for molecular transport
    • Shin J., Pierce N.A. A synthetic DNA walker for molecular transport. J Am Chem Soc 2004, 126:10834-10835.
    • (2004) J Am Chem Soc , vol.126 , pp. 10834-10835
    • Shin, J.1    Pierce, N.A.2
  • 22
    • 67749084297 scopus 로고    scopus 로고
    • Mechanism for a directional. Processive, and reversible DNA motor
    • Bath J., Green S.J., Allen K.E., Turberfield A.J. Mechanism for a directional. Processive, and reversible DNA motor. Small 2009, 5:1513-1516.
    • (2009) Small , vol.5 , pp. 1513-1516
    • Bath, J.1    Green, S.J.2    Allen, K.E.3    Turberfield, A.J.4
  • 23
    • 64249145393 scopus 로고    scopus 로고
    • A Bipedal DNA Brownian motor with coordinated legs
    • Omabegho T., Sha R., Seeman N.C. A Bipedal DNA Brownian motor with coordinated legs. Science 2009, 324:67-71.
    • (2009) Science , vol.324 , pp. 67-71
    • Omabegho, T.1    Sha, R.2    Seeman, N.C.3
  • 24
    • 33744824673 scopus 로고    scopus 로고
    • Addressable molecular tweezers for DNA-templated coupling reactions
    • Chhabra R., Sharma J., Liu Y., Yan H. Addressable molecular tweezers for DNA-templated coupling reactions. Nano Lett 2006, 6:978-983.
    • (2006) Nano Lett , vol.6 , pp. 978-983
    • Chhabra, R.1    Sharma, J.2    Liu, Y.3    Yan, H.4
  • 26
    • 8444248943 scopus 로고    scopus 로고
    • Happy Hollidays: 40th anniversary of the Holliday junction
    • Liu Y., West S.C. Happy Hollidays: 40th anniversary of the Holliday junction. Nat Rev Mol Cell Biol 2004, 5:937-944.
    • (2004) Nat Rev Mol Cell Biol , vol.5 , pp. 937-944
    • Liu, Y.1    West, S.C.2
  • 29
    • 68249100234 scopus 로고    scopus 로고
    • Thermo-switchable charge transport and electrocatalysis using metal-ion-modified pNIPAM-functionalized electrodes
    • Riskin M., Tel-Vered R., Willner I. Thermo-switchable charge transport and electrocatalysis using metal-ion-modified pNIPAM-functionalized electrodes. Adv Funct Mater 2009, 19:2474-2480.
    • (2009) Adv Funct Mater , vol.19 , pp. 2474-2480
    • Riskin, M.1    Tel-Vered, R.2    Willner, I.3
  • 31
  • 32
    • 27544503005 scopus 로고    scopus 로고
    • Switching the conformation of a DNA molecule with a chemical oscillator
    • Liedl T., Simmel F.C. Switching the conformation of a DNA molecule with a chemical oscillator. Nano Lett 2005, 5:1894-1898.
    • (2005) Nano Lett , vol.5 , pp. 1894-1898
    • Liedl, T.1    Simmel, F.C.2
  • 35
    • 34250767800 scopus 로고    scopus 로고
    • Enthalpy-driven three-state switching of a superhydrophilic/superhydrophobic surface
    • Wang S., Liu H., Liu D., Ma X., Fang X., Jiang L. Enthalpy-driven three-state switching of a superhydrophilic/superhydrophobic surface. Angew Chem Intl Ed 2007, 46:3915-3917.
    • (2007) Angew Chem Intl Ed , vol.46 , pp. 3915-3917
    • Wang, S.1    Liu, H.2    Liu, D.3    Ma, X.4    Fang, X.5    Jiang, L.6
  • 37
    • 67650678151 scopus 로고    scopus 로고
    • U. a.: A biomimetic potassium responsive nanochannel: G-Quadruplex DNA conformational switching in a synthetic nanopore
    • Hou X., Guo W., Xia F., Nie F., Dong H., Tian Y., Wen L., Wang L., Cao L., Yang Y. u. a.: A biomimetic potassium responsive nanochannel: G-Quadruplex DNA conformational switching in a synthetic nanopore. J Am Chem Soc 2009, 22:7800-7805.
    • (2009) J Am Chem Soc , vol.22 , pp. 7800-7805
    • Hou, X.1    Guo, W.2    Xia, F.3    Nie, F.4    Dong, H.5    Tian, Y.6    Wen, L.7    Wang, L.8    Cao, L.9    Yang, Y.10
  • 39
    • 0032169981 scopus 로고    scopus 로고
    • DNA-enhanced peroxidase activity of a DNA aptamer-hemin complex
    • Travascio P., Li Y., Sen D. DNA-enhanced peroxidase activity of a DNA aptamer-hemin complex. Chem Biol 1998, 5:505-517.
    • (1998) Chem Biol , vol.5 , pp. 505-517
    • Travascio, P.1    Li, Y.2    Sen, D.3
  • 40
    • 66549124907 scopus 로고    scopus 로고
    • The structures of quadruplex nucleic acids and their drug complexes
    • Neidle S. The structures of quadruplex nucleic acids and their drug complexes. Curr Opin Struct Biol 2009, 19:239-250.
    • (2009) Curr Opin Struct Biol , vol.19 , pp. 239-250
    • Neidle, S.1
  • 41
    • 2442649768 scopus 로고    scopus 로고
    • Lighting up biochemiluminescence by the surface self-assembly of DNA-hemin complexes
    • Xiao Y., Pavlov V., Gill R., Bourenko T., Willner I. Lighting up biochemiluminescence by the surface self-assembly of DNA-hemin complexes. ChemBioChem 2004, 5:374-379.
    • (2004) ChemBioChem , vol.5 , pp. 374-379
    • Xiao, Y.1    Pavlov, V.2    Gill, R.3    Bourenko, T.4    Willner, I.5
  • 46
    • 47049118961 scopus 로고    scopus 로고
    • 2+ ions by oligonucleotide-gold-nanoparticle hybrids and DNA-based machines
    • 2+ ions by oligonucleotide-gold-nanoparticle hybrids and DNA-based machines. Angew Chem Intl Ed 2008, 47:3927-3931.
    • (2008) Angew Chem Intl Ed , vol.47 , pp. 3927-3931
    • Li, D.1    Wieckowska, A.2    Willner, I.3
  • 47
    • 72949097301 scopus 로고    scopus 로고
    • Inhibition of the in vitro replication of DNA by an aptamer-protein complex in an autonomous DNA machine
    • Zhu C., Wen Y., Li D., Wang L., Song S., Fan C., Willner I. Inhibition of the in vitro replication of DNA by an aptamer-protein complex in an autonomous DNA machine. Chem-Eur J 2009, 15:11898-11903.
    • (2009) Chem-Eur J , vol.15 , pp. 11898-11903
    • Zhu, C.1    Wen, Y.2    Li, D.3    Wang, L.4    Song, S.5    Fan, C.6    Willner, I.7
  • 48
    • 33846087722 scopus 로고    scopus 로고
    • Diagnosing viruses by the rolling circle amplified synthesis of DNAzymes
    • Cheglakov Z., Weizmann Y., Basnar B., Willner I. Diagnosing viruses by the rolling circle amplified synthesis of DNAzymes. Org Biomol Chem 2007, 5:223-225.
    • (2007) Org Biomol Chem , vol.5 , pp. 223-225
    • Cheglakov, Z.1    Weizmann, Y.2    Basnar, B.3    Willner, I.4
  • 49
    • 41849090724 scopus 로고    scopus 로고
    • Reversible electronic nanoswitch based on DNA G-quadruplex conformation: a platform for single-step, reagentless potassium detection
    • Wu Z., Chen C., Shen G., Yu R. Reversible electronic nanoswitch based on DNA G-quadruplex conformation: a platform for single-step, reagentless potassium detection. Biomaterials 2008, 29:2689-2696.
    • (2008) Biomaterials , vol.29 , pp. 2689-2696
    • Wu, Z.1    Chen, C.2    Shen, G.3    Yu, R.4
  • 50
    • 0022004980 scopus 로고
    • Electron transfers in chemistry and biology
    • Marcus R.A., Sutin N. Electron transfers in chemistry and biology. BBA - Rev Bioenergetics 1985, 811:265-322.
    • (1985) BBA - Rev Bioenergetics , vol.811 , pp. 265-322
    • Marcus, R.A.1    Sutin, N.2
  • 51
    • 76149144403 scopus 로고    scopus 로고
    • MNAzymes, a versatile new class of nucleic acid enzymes that can function as biosensors and molecular switches
    • Mokany E., Bone S.M., Young P.E., Doan T.B., Todd A.V. MNAzymes, a versatile new class of nucleic acid enzymes that can function as biosensors and molecular switches. J Am Chem Soc 2010, 132:1051-1059.
    • (2010) J Am Chem Soc , vol.132 , pp. 1051-1059
    • Mokany, E.1    Bone, S.M.2    Young, P.E.3    Doan, T.B.4    Todd, A.V.5
  • 52
    • 0028983570 scopus 로고
    • 2+-dependent RNA phosphoesterase activity
    • 2+-dependent RNA phosphoesterase activity. Chem Biol 1995, 2:655-660.
    • (1995) Chem Biol , vol.2 , pp. 655-660
    • Breaker, R.R.1    Joyce, G.F.2
  • 53
    • 36849002854 scopus 로고    scopus 로고
    • A binary deoxyribozyme for nucleic acid analysis
    • Kolpashchikov D.M. A binary deoxyribozyme for nucleic acid analysis. ChemBioChem 2007, 8:2039-2042.
    • (2007) ChemBioChem , vol.8 , pp. 2039-2042
    • Kolpashchikov, D.M.1
  • 54
    • 0034703734 scopus 로고    scopus 로고
    • Fluorescent sensors based on aptamer self-assembly
    • Stojanovic M.N., de Prada P., Landry D.W. Fluorescent sensors based on aptamer self-assembly. J Am Chem Soc 2000, 122:11547-11548.
    • (2000) J Am Chem Soc , vol.122 , pp. 11547-11548
    • Stojanovic, M.N.1    de Prada, P.2    Landry, D.W.3
  • 55
    • 0034813846 scopus 로고    scopus 로고
    • Aptamer-based folding fluorescent sensor for cocaine
    • Stojanovic M.N., de Prada P., Landry D.W. Aptamer-based folding fluorescent sensor for cocaine. J Am Chem Soc 2001, 123:4928-4931.
    • (2001) J Am Chem Soc , vol.123 , pp. 4928-4931
    • Stojanovic, M.N.1    de Prada, P.2    Landry, D.W.3
  • 56
    • 67849111859 scopus 로고    scopus 로고
    • Supramolecular cocaine-aptamer complexes activate biocatalytic cascades
    • Freeman R., Sharon E., Tel-Vered R., Willner I. Supramolecular cocaine-aptamer complexes activate biocatalytic cascades. J Am Chem Soc 2009, 131:5028-5029.
    • (2009) J Am Chem Soc , vol.131 , pp. 5028-5029
    • Freeman, R.1    Sharon, E.2    Tel-Vered, R.3    Willner, I.4
  • 57
    • 67149126605 scopus 로고    scopus 로고
    • Self-assembly of supramolecular aptamer structures for optical or electrochemical sensing
    • Freeman R., Li Y., Tel-Vered R., Sharon E., Elbaz J., Willner I. Self-assembly of supramolecular aptamer structures for optical or electrochemical sensing. Analyst 2009, 134:653-656.
    • (2009) Analyst , vol.134 , pp. 653-656
    • Freeman, R.1    Li, Y.2    Tel-Vered, R.3    Sharon, E.4    Elbaz, J.5    Willner, I.6
  • 58
    • 70149101545 scopus 로고    scopus 로고
    • High specificity, electrochemical sandwich assays based on single aptamer sequences and suitable for the direct detection of small-molecule targets in blood and other complex matrices
    • Zuo X., Xiao Y., Plaxco K.W. High specificity, electrochemical sandwich assays based on single aptamer sequences and suitable for the direct detection of small-molecule targets in blood and other complex matrices. J Am Chem Soc 2009, 131:6944-6945.
    • (2009) J Am Chem Soc , vol.131 , pp. 6944-6945
    • Zuo, X.1    Xiao, Y.2    Plaxco, K.W.3
  • 59
    • 63749132434 scopus 로고    scopus 로고
    • Cooperative multicomponent self-assembly of nucleic acid structures for the activation of dnazyme cascades: a paradigm for DNA sensors and aptasensors
    • Elbaz J., Moshe M., Shlyahovsky B., Willner I. Cooperative multicomponent self-assembly of nucleic acid structures for the activation of dnazyme cascades: a paradigm for DNA sensors and aptasensors. Chem-Eur J 2009, 15:3411-3418.
    • (2009) Chem-Eur J , vol.15 , pp. 3411-3418
    • Elbaz, J.1    Moshe, M.2    Shlyahovsky, B.3    Willner, I.4
  • 60
    • 85015106657 scopus 로고    scopus 로고
    • DNA in a material world
    • Seeman N.C. DNA in a material world. Nature 2003, 421:427-431.
    • (2003) Nature , vol.421 , pp. 427-431
    • Seeman, N.C.1
  • 61
    • 33645028600 scopus 로고    scopus 로고
    • Folding DNA to create nanoscale shapes and patterns
    • Rothemund P.W.K. Folding DNA to create nanoscale shapes and patterns. Nature 2006, 440:297-302.
    • (2006) Nature , vol.440 , pp. 297-302
    • Rothemund, P.W.K.1
  • 62
    • 68449088261 scopus 로고    scopus 로고
    • Folding DNA into twisted and curved nanoscale shapes
    • Dietz H., Douglas S.M., Shih W.M. Folding DNA into twisted and curved nanoscale shapes. Science 2009, 325:725-730.
    • (2009) Science , vol.325 , pp. 725-730
    • Dietz, H.1    Douglas, S.M.2    Shih, W.M.3
  • 63
  • 67
    • 40449106064 scopus 로고    scopus 로고
    • Conductivity of a single DNA duplex bridging a carbon nanotube gap
    • Guo X., Gorodetsky A.A., Hone J., Barton J.K., Nuckolls C. Conductivity of a single DNA duplex bridging a carbon nanotube gap. Nat Nano 2008, 3:163-167.
    • (2008) Nat Nano , vol.3 , pp. 163-167
    • Guo, X.1    Gorodetsky, A.A.2    Hone, J.3    Barton, J.K.4    Nuckolls, C.5
  • 68
    • 52949116414 scopus 로고    scopus 로고
    • Assembling materials with DNA as the guide
    • Aldaye F.A., Palmer A.L., Sleiman H.F. Assembling materials with DNA as the guide. Science 2008, 321:1795-1799.
    • (2008) Science , vol.321 , pp. 1795-1799
    • Aldaye, F.A.1    Palmer, A.L.2    Sleiman, H.F.3
  • 69
    • 66749192694 scopus 로고    scopus 로고
    • Scaffolded DNA Origami of a DNA tetrahedron molecular container
    • Ke Y., Sharma J., Liu M., Jahn K., Liu Y., Yan H. Scaffolded DNA Origami of a DNA tetrahedron molecular container. Nano Lett 2009, 9:2445-2447.
    • (2009) Nano Lett , vol.9 , pp. 2445-2447
    • Ke, Y.1    Sharma, J.2    Liu, M.3    Jahn, K.4    Liu, Y.5    Yan, H.6
  • 70
    • 67049154133 scopus 로고    scopus 로고
    • A DNA nanomachine that maps spatial and temporal pH changes inside living cells
    • Modi S., Swetha M.G., Goswami D., Gupta G.D., Mayor S., Krishnan Y. A DNA nanomachine that maps spatial and temporal pH changes inside living cells. Nat Nano 2009, 4:325-330.
    • (2009) Nat Nano , vol.4 , pp. 325-330
    • Modi, S.1    Swetha, M.G.2    Goswami, D.3    Gupta, G.D.4    Mayor, S.5    Krishnan, Y.6
  • 72
    • 70349134760 scopus 로고    scopus 로고
    • A replicable tetrahedral nanostructure self-assembled from a single DNA strand
    • Li Z., Wei B., Nangreave J., Lin C., Liu Y., Mi Y., Yan H. A replicable tetrahedral nanostructure self-assembled from a single DNA strand. J Am Chem Soc 2009, 131:13093-13098.
    • (2009) J Am Chem Soc , vol.131 , pp. 13093-13098
    • Li, Z.1    Wei, B.2    Nangreave, J.3    Lin, C.4    Liu, Y.5    Mi, Y.6    Yan, H.7
  • 73
    • 0037428953 scopus 로고    scopus 로고
    • Cellular delivery of peptide nucleic acid (PNA)
    • Koppelhus U., Nielsen P.E. Cellular delivery of peptide nucleic acid (PNA). Adv Drug Deliver Rev 2003, 55:267-280.
    • (2003) Adv Drug Deliver Rev , vol.55 , pp. 267-280
    • Koppelhus, U.1    Nielsen, P.E.2
  • 74
    • 77949676231 scopus 로고    scopus 로고
    • Locked nucleic acids: promising nucleic acid analogs for therapeutic applications
    • Veedu R.N., Wengel J. Locked nucleic acids: promising nucleic acid analogs for therapeutic applications. Chem Biodivers 2010, 7:536-542.
    • (2010) Chem Biodivers , vol.7 , pp. 536-542
    • Veedu, R.N.1    Wengel, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.