-
1
-
-
0033368475
-
Messenger RNA stability and its role in control of gene expression in bacteria and phages
-
PMID:10690408
-
Grunberg-Manago M. Messenger RNA stability and its role in control of gene expression in bacteria and phages. Annu Rev Genet 1999; 33:193-227; PMID:10690408; http://dx.doi.org/10.1146/annurev.genet.33.1.193.
-
(1999)
Annu Rev Genet
, vol.33
, pp. 193-227
-
-
Grunberg-Manago, M.1
-
2
-
-
78650930357
-
Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast
-
PMID:21206491
-
Miller C, Schwalb B, Maier K, Schulz D, Dümcke S, Zacher B, et al. Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast. Mol Syst Biol 2011; 7:458; PMID:21206491; http://dx.doi.org/10.1038/msb. 2010.112.
-
(2011)
Mol Syst Biol
, vol.7
, pp. 458
-
-
Miller, C.1
Schwalb, B.2
Maier, K.3
Schulz, D.4
Dümcke, S.5
Zacher, B.6
-
3
-
-
0033457296
-
Analysis of the function of Escherichia coli poly(A) polymerase I in RNA metabolism
-
PMID:10594833
-
Mohanty BK, Kushner SR. Analysis of the function of Escherichia coli poly(A) polymerase I in RNA metabolism. Mol Microbiol 1999; 34:1094-108; PMID:10594833; http://dx.doi.org/10.1046/j.1365-2958.1999.01673.x.
-
(1999)
Mol Microbiol
, vol.34
, pp. 1094-1108
-
-
Mohanty, B.K.1
Kushner, S.R.2
-
4
-
-
0037315564
-
Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation
-
PMID:12566399
-
Selinger DW, Saxena RM, Cheung KJ, Church GM, Rosenow C. Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation. Genome Res 2003; 13:216-23; PMID:12566399; http://dx.doi.org/10. 1101/gr.912603.
-
(2003)
Genome Res
, vol.13
, pp. 216-223
-
-
Selinger, D.W.1
Saxena, R.M.2
Cheung, K.J.3
Church, G.M.4
Rosenow, C.5
-
5
-
-
0030731108
-
The complete genome sequence of the gram-positive bacterium Bacillus subtilis
-
PMID:9384377
-
Kunst F, Ogasawara N, Moszer I, Albertini AM, Alloni G, Azevedo V, et al. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Nature 1997; 390:249-56; PMID:9384377; http://dx.doi.org/10.1038/36786.
-
(1997)
Nature
, vol.390
, pp. 249-256
-
-
Kunst, F.1
Ogasawara, N.2
Moszer, I.3
Albertini, A.M.4
Alloni, G.5
Azevedo, V.6
-
6
-
-
35548995356
-
The RNA degradosome of Escherichia coli: An mRNA-degrading machine assembled on RNase E
-
PMID:17447862
-
Carpousis AJ. The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E. Annu Rev Microbiol 2007; 61:71-87; PMID:17447862; http://dx.doi.org/10.1146/annurev.micro.61.080706.093440.
-
(2007)
Annu Rev Microbiol
, vol.61
, pp. 71-87
-
-
Carpousis, A.J.1
-
7
-
-
64049118181
-
Endonucleolytic initiation of mRNA decay in Escherichia coli
-
PMID:19215771
-
Carpousis AJ, Luisi BF, McDowall KJ. Endonucleolytic initiation of mRNA decay in Escherichia coli. Prog Mol Biol Transl Sci 2009; 85:91-135; PMID:19215771; http://dx.doi.org/10.1016/S0079-6603(08)00803-9.
-
(2009)
Prog Mol Biol Transl Sci
, vol.85
, pp. 91-135
-
-
Carpousis, A.J.1
Luisi, B.F.2
McDowall, K.J.3
-
8
-
-
84871321022
-
RNase E: At the interface of bacterial RNA processing and decay
-
PMID:23241849
-
Mackie GA. RNase E: at the interface of bacterial RNA processing and decay. Nat Rev Microbiol 2013; 11:45-57; PMID:23241849; http://dx.doi.org/10. 1038/nrmicro2930.
-
(2013)
Nat Rev Microbiol
, vol.11
, pp. 45-57
-
-
Mackie, G.A.1
-
9
-
-
79955608587
-
Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays
-
PMID:21149258
-
Stead MB, Marshburn S, Mohanty BK, Mitra J, Pena Castillo L, Ray D, et al. Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays. Nucleic Acids Res 2011; 39:3188-203; PMID:21149258; http://dx.doi.org/10.1093/nar/gkq1242.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 3188-3203
-
-
Stead, M.B.1
Marshburn, S.2
Mohanty, B.K.3
Mitra, J.4
Pena Castillo, L.5
Ray, D.6
-
10
-
-
84859229689
-
Three essential ribonucleases-RNase Y, J1, and III-control the abundance of a majority of Bacillus subtilis mRNAs
-
PMID:22412379
-
Durand S, Gilet L, Bessières P, Nicolas P, Condon C. Three essential ribonucleases-RNase Y, J1, and III-control the abundance of a majority of Bacillus subtilis mRNAs. PLoS Genet 2012; 8:e1002520; PMID:22412379; http://dx.doi.org/10.1371/journal.pgen.1002520.
-
(2012)
PLoS Genet
, vol.8
-
-
Durand, S.1
Gilet, L.2
Bessières, P.3
Nicolas, P.4
Condon, C.5
-
11
-
-
84865165883
-
RNA degradation in Bacillus subtilis: an interplay of essential endo- and exoribonucleases
-
PMID:22568516
-
Lehnik-Habrink M, Lewis RJ, Mäder U, Stülke J. RNA degradation in Bacillus subtilis: an interplay of essential endo- and exoribonucleases. Mol Microbiol 2012; 84:1005-17; PMID:22568516; http://dx.doi.org/10.1111/j.1365- 2958.2012.08072.x.
-
(2012)
Mol Microbiol
, vol.84
, pp. 1005-1017
-
-
Lehnik-Habrink, M.1
Lewis, R.J.2
Mäder, U.3
Stülke, J.4
-
12
-
-
70450222923
-
RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis
-
PMID:19779461
-
Shahbabian K, Jamalli A, Zig L, Putzer H. RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis. EMBO J 2009; 28:3523-33; PMID:19779461; http://dx.doi.org/10.1038/emboj.2009.283.
-
(2009)
EMBO J
, vol.28
, pp. 3523-3533
-
-
Shahbabian, K.1
Jamalli, A.2
Zig, L.3
Putzer, H.4
-
13
-
-
77954358026
-
Initiation of decay of Bacillus subtilis rpsO mRNA by endoribonuclease RNase Y
-
PMID:20418391
-
Yao S, Bechhofer DH. Initiation of decay of Bacillus subtilis rpsO mRNA by endoribonuclease RNase Y. J Bacteriol 2010; 192:3279-86; PMID:20418391; http://dx.doi.org/10.1128/JB.00230-10.
-
(2010)
J Bacteriol
, vol.192
, pp. 3279-3286
-
-
Yao, S.1
Bechhofer, D.H.2
-
14
-
-
0032531768
-
Ribonuclease E is a 5′-end-dependent endonuclease
-
PMID:9790196
-
Mackie GA. Ribonuclease E is a 5′-end-dependent endonuclease. Nature 1998; 395:720-3; PMID:9790196; http://dx.doi.org/10.1038/27246.
-
(1998)
Nature
, vol.395
, pp. 720-723
-
-
Mackie, G.A.1
-
15
-
-
34250875706
-
Initiation of RNA decay in Escherichia coli by 5′ pyrophosphate removal
-
PMID:17612492
-
Celesnik H, Deana A, Belasco JG. Initiation of RNA decay in Escherichia coli by 5′ pyrophosphate removal. Mol Cell 2007; 27:79-90; PMID:17612492; http://dx.doi.org/10.1016/j.molcel.2007.05.038.
-
(2007)
Mol Cell
, vol.27
, pp. 79-90
-
-
Celesnik, H.1
Deana, A.2
Belasco, J.G.3
-
16
-
-
38349117689
-
The bacterial enzyme RppH triggers messenger RNA degradation by 5′ pyrophosphate removal
-
PMID:18202662
-
Deana A, Celesnik H, Belasco JG. The bacterial enzyme RppH triggers messenger RNA degradation by 5′ pyrophosphate removal. Nature 2008; 451:355-8; PMID:18202662; http://dx.doi.org/10.1038/nature06475.
-
(2008)
Nature
, vol.451
, pp. 355-358
-
-
Deana, A.1
Celesnik, H.2
Belasco, J.G.3
-
17
-
-
34249101864
-
5′-to-3′ exoribonuclease activity in bacteria: Role of RNase J1 in rRNA maturation and 5′ stability of mRNA
-
PMID:17512403
-
Mathy N, Bénard L, Pellegrini O, Daou R, Wen T, Condon C. 5′-to-3′ exoribonuclease activity in bacteria: role of RNase J1 in rRNA maturation and 5′ stability of mRNA. Cell 2007; 129:681-92; PMID:17512403; http://dx.doi.org/10.1016/j.cell.2007.02.051.
-
(2007)
Cell
, vol.129
, pp. 681-692
-
-
Mathy, N.1
Bénard, L.2
Pellegrini, O.3
Daou, R.4
Wen, T.5
Condon, C.6
-
18
-
-
80052988291
-
An RNA pyrophosphohydrolase triggers 5′-exonucleolytic degradation of mRNA in Bacillus subtilis
-
PMID:21925382
-
Richards J, Liu Q, Pellegrini O, Celesnik H, Yao S, Bechhofer DH, et al. An RNA pyrophosphohydrolase triggers 5′-exonucleolytic degradation of mRNA in Bacillus subtilis. Mol Cell 2011; 43:940-9; PMID:21925382; http://dx.doi.org/10.1016/j.molcel.2011.07.023.
-
(2011)
Mol Cell
, vol.43
, pp. 940-949
-
-
Richards, J.1
Liu, Q.2
Pellegrini, O.3
Celesnik, H.4
Yao, S.5
Bechhofer, D.H.6
-
19
-
-
38849144533
-
Structural insights into the dual activity of RNase J
-
PMID:18204464
-
Li de la Sierra-Gallay I, Zig L, Jamalli A, Putzer H. Structural insights into the dual activity of RNase J. Nat Struct Mol Biol 2008; 15:206-12; PMID:18204464; http://dx.doi.org/10.1038/nsmb.1376.
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 206-212
-
-
Li De La Sierra-Gallay, I.1
Zig, L.2
Jamalli, A.3
Putzer, H.4
-
20
-
-
77955412028
-
What is the role of RNase J in mRNA turnover?
-
PMID:20458164
-
Condon C. What is the role of RNase J in mRNA turnover? RNA Biol 2010; 7:316-21; PMID:20458164; http://dx.doi.org/10.4161/rna.7.3.11913.
-
(2010)
RNA Biol
, vol.7
, pp. 316-321
-
-
Condon, C.1
-
21
-
-
84860830992
-
Bacteriophage T4 polynucleotide kinase triggers degradation of mRNAs
-
PMID:22499790
-
Durand S, Richard G, Bontems F, Uzan M. Bacteriophage T4 polynucleotide kinase triggers degradation of mRNAs. Proc Natl Acad Sci USA 2012; 109:7073-8; PMID:22499790; http://dx.doi.org/10.1073/pnas.1119802109.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 7073-7078
-
-
Durand, S.1
Richard, G.2
Bontems, F.3
Uzan, M.4
-
22
-
-
34250330356
-
Polyadenylation of a functional mRNA controls gene expression in Escherichia coli
-
PMID:17395638
-
Joanny G, Le Derout J, Bréchemier-Baey D, Labas V, Vinh J, Régnier P, et al. Polyadenylation of a functional mRNA controls gene expression in Escherichia coli. Nucleic Acids Res 2007; 35:2494-502; PMID:17395638; http://dx.doi.org/10.1093/nar/gkm120.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 2494-2502
-
-
Joanny, G.1
Le Derout, J.2
Bréchemier-Baey, D.3
Labas, V.4
Vinh, J.5
Régnier, P.6
-
23
-
-
0027267498
-
The Escherichia coli pcnB gene promotes adenylylation of antisense RNAI of ColE1-type plasmids in vivo and degradation of RNAI decay intermediates
-
PMID:7688127
-
Xu F, Lin-Chao S, Cohen SN. The Escherichia coli pcnB gene promotes adenylylation of antisense RNAI of ColE1-type plasmids in vivo and degradation of RNAI decay intermediates. Proc Natl Acad Sci USA 1993; 90:6756-60; PMID:7688127; http://dx.doi.org/10.1073/pnas.90.14.6756.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 6756-6760
-
-
Xu, F.1
Lin-Chao, S.2
Cohen, S.N.3
-
24
-
-
0028988981
-
Polyadenylylation destabilizes the rpsO mRNA of Escherichia coli
-
PMID:7732015
-
Hajnsdorf E, Braun F, Haugel-Nielsen J, Régnier P. Polyadenylylation destabilizes the rpsO mRNA of Escherichia coli. Proc Natl Acad Sci USA 1995; 92:3973-7; PMID:7732015; http://dx.doi.org/10.1073/pnas.92.9. 3973.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 3973-3977
-
-
Hajnsdorf, E.1
Braun, F.2
Haugel-Nielsen, J.3
Régnier, P.4
-
25
-
-
33750984542
-
The majority of Escherichia coli mRNAs undergo post-transcriptional modification in exponentially growing cells
-
PMID:17040898
-
Mohanty BK, Kushner SR. The majority of Escherichia coli mRNAs undergo post-transcriptional modification in exponentially growing cells. Nucleic Acids Res 2006; 34:5695-704; PMID:17040898; http://dx.doi.org/10.1093/nar/gkl684.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 5695-5704
-
-
Mohanty, B.K.1
Kushner, S.R.2
-
26
-
-
84873685962
-
Deregulation of poly(A) polymerase I in Escherichia coli inhibits protein synthesis and leads to cell death
-
PMID:23241393
-
Mohanty BK, Kushner SR. Deregulation of poly(A) polymerase I in Escherichia coli inhibits protein synthesis and leads to cell death. Nucleic Acids Res 2013; 41:1757-66; PMID:23241393; http://dx.doi.org/10.1093/nar/ gks1280.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 1757-1766
-
-
Mohanty, B.K.1
Kushner, S.R.2
-
27
-
-
21844443073
-
Addition of poly(A) and heteropolymeric 3′ ends in Bacillus subtilis wild-type and polynucleotide phosphorylase-deficient strains
-
PMID:15995184
-
Campos-Guillén J, Bralley P, Jones GH, Bechhofer DH, Olmedo-Alvarez G. Addition of poly(A) and heteropolymeric 3′ ends in Bacillus subtilis wild-type and polynucleotide phosphorylase-deficient strains. J Bacteriol 2005; 187:4698-706; PMID:15995184; http://dx.doi.org/10.1128/JB.187. 14.4698-4706.2005.
-
(2005)
J Bacteriol
, vol.187
, pp. 4698-4706
-
-
Campos-Guillén, J.1
Bralley, P.2
Jones, G.H.3
Bechhofer, D.H.4
Olmedo-Alvarez, G.5
-
28
-
-
84860723984
-
From conformational chaos to robust regulation: The structure and function of the multi-enzyme RNA degradosome
-
PMID:22169164
-
Górna MW, Carpousis AJ, Luisi BF. From conformational chaos to robust regulation: the structure and function of the multi-enzyme RNA degradosome. Q Rev Biophys 2012; 45:105-45; PMID:22169164; http://dx.doi.org/10. 1017/S003358351100014X.
-
(2012)
Q Rev Biophys
, vol.45
, pp. 105-145
-
-
Górna, M.W.1
Carpousis, A.J.2
Luisi, B.F.3
-
29
-
-
84875188969
-
Rarely at rest: RNA helicases and their busy contributions to RNA degradation, regulation and quality control
-
PMID:23064154
-
Hardwick SW, Luisi BF. Rarely at rest: RNA helicases and their busy contributions to RNA degradation, regulation and quality control. RNA Biol 2012; 10; PMID:23064154.
-
(2012)
RNA Biol
, pp. 10
-
-
Hardwick, S.W.1
Luisi, B.F.2
-
30
-
-
0033214259
-
Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3′ exonuclease and a DEAD-box RNA helicase
-
PMID:10521403
-
Coburn GA, Miao X, Briant DJ, Mackie GA. Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3′ exonuclease and a DEAD-box RNA helicase. Genes Dev 1999; 13:2594-603; PMID:10521403; http://dx.doi.org/10.1101/gad.13.19.2594.
-
(1999)
Genes Dev
, vol.13
, pp. 2594-2603
-
-
Coburn, G.A.1
Miao, X.2
Briant, D.J.3
Mackie, G.A.4
-
31
-
-
1242342956
-
The RNA degradosome and poly(A) polymerase of Escherichia coli are required in vivo for the degradation of small mRNA decay intermediates containing REP-stabilizers
-
PMID:14731278
-
Khemici V, Carpousis AJ. The RNA degradosome and poly(A) polymerase of Escherichia coli are required in vivo for the degradation of small mRNA decay intermediates containing REP-stabilizers. Mol Microbiol 2004; 51:777-90; PMID:14731278; http://dx.doi.org/10.1046/j.1365-2958.2003.03862.x.
-
(2004)
Mol Microbiol
, vol.51
, pp. 777-790
-
-
Khemici, V.1
Carpousis, A.J.2
-
32
-
-
0029922992
-
A DEADbox RNA helicase in the Escherichia coli RNA degradosome
-
PMID:8610017
-
Py B, Higgins CF, Krisch HM, Carpousis AJ. A DEADbox RNA helicase in the Escherichia coli RNA degradosome. Nature 1996; 381:169-72; PMID:8610017; http://dx.doi.org/10.1038/381169a0.
-
(1996)
Nature
, vol.381
, pp. 169-172
-
-
Py, B.1
Higgins, C.F.2
Krisch, H.M.3
Carpousis, A.J.4
-
33
-
-
33847117737
-
Recognition and cooperation between the ATP-dependent RNA helicase RhlB and ribonuclease RNase E
-
PMID:17234211
-
Chandran V, Poljak L, Vanzo NF, Leroy A, Miguel RN, Fernandez-Recio J, et al. Recognition and cooperation between the ATP-dependent RNA helicase RhlB and ribonuclease RNase E. J Mol Biol 2007; 367:113-32; PMID:17234211; http://dx.doi.org/10.1016/j.jmb.2006.12.014.
-
(2007)
J Mol Biol
, vol.367
, pp. 113-132
-
-
Chandran, V.1
Poljak, L.2
Vanzo, N.F.3
Leroy, A.4
Miguel, R.N.5
Fernandez-Recio, J.6
-
34
-
-
80053019485
-
Regulation by small RNAs in bacteria: Expanding frontiers
-
PMID:21925377
-
Storz G, Vogel J, Wassarman KM. Regulation by small RNAs in bacteria: expanding frontiers. Mol Cell 2011; 43:880-91; PMID:21925377; http://dx.doi.org/10.1016/j.molcel.2011.08.022.
-
(2011)
Mol Cell
, vol.43
, pp. 880-891
-
-
Storz, G.1
Vogel, J.2
Wassarman, K.M.3
-
35
-
-
84858866772
-
A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli
-
PMID:22289118
-
Thomason MK, Fontaine F, De Lay N, Storz G. A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli. Mol Microbiol 2012; 84:17-35; PMID:22289118; http://dx.doi.org/10.1111/j.1365-2958.2012.07965.x.
-
(2012)
Mol Microbiol
, vol.84
, pp. 17-35
-
-
Thomason, M.K.1
Fontaine, F.2
De Lay, N.3
Storz, G.4
-
36
-
-
71549126189
-
Activation of gene expression by small RNA
-
PMID:19880344
-
Fröhlich KS, Vogel J. Activation of gene expression by small RNA. Curr Opin Microbiol 2009; 12:674-82; PMID:19880344; http://dx.doi.org/10.1016/j. mib.2009.09.009.
-
(2009)
Curr Opin Microbiol
, vol.12
, pp. 674-682
-
-
Fröhlich, K.S.1
Vogel, J.2
-
37
-
-
77955155869
-
Base pairing small RNAs and their roles in global regulatory networks
-
PMID:20662934
-
Beisel CL, Storz G. Base pairing small RNAs and their roles in global regulatory networks. FEMS Microbiol Rev 2010; 34:866-82; PMID:20662934.
-
(2010)
FEMS Microbiol Rev
, vol.34
, pp. 866-882
-
-
Beisel, C.L.1
Storz, G.2
-
38
-
-
79960433506
-
Hfq and its constellation of RNA
-
PMID:21760622
-
Vogel J, Luisi BF. Hfq and its constellation of RNA. Nat Rev Microbiol 2011; 9:578-89; PMID:21760622; http://dx.doi.org/10.1038/nrmicro2615.
-
(2011)
Nat Rev Microbiol
, vol.9
, pp. 578-589
-
-
Vogel, J.1
Luisi, B.F.2
-
39
-
-
83355177980
-
Competition among Hfq-binding small RNAs in Escherichia coli
-
PMID:22040174
-
Moon K, Gottesman S. Competition among Hfq-binding small RNAs in Escherichia coli. Mol Microbiol 2011; 82:1545-62; PMID:22040174; http://dx.doi.org/10.1111/j.1365-2958.2011.07907.x.
-
(2011)
Mol Microbiol
, vol.82
, pp. 1545-1562
-
-
Moon, K.1
Gottesman, S.2
-
40
-
-
0141860088
-
Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli
-
PMID:12975324
-
Massé E, Escorcia FE, Gottesman S. Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli. Genes Dev 2003; 17:2374-83; PMID:12975324; http://dx.doi.org/10.1101/gad.1127103.
-
(2003)
Genes Dev
, vol.17
, pp. 2374-2383
-
-
Massé, E.1
Escorcia, F.E.2
Gottesman, S.3
-
41
-
-
84858670765
-
The crucial role of PNPase in the degradation of small RNAs that are not associated with Hfq
-
PMID:22355164
-
Andrade JM, Pobre V, Matos AM, Arraiano CM. The crucial role of PNPase in the degradation of small RNAs that are not associated with Hfq. RNA 2012; 18:844-55; PMID:22355164; http://dx.doi.org/10.1261/rna.029413.111.
-
(2012)
RNA
, vol.18
, pp. 844-855
-
-
Andrade, J.M.1
Pobre, V.2
Matos, A.M.3
Arraiano, C.M.4
-
42
-
-
79956225645
-
Role of polynucleotide phosphorylase in sRNA function in Escherichia coli
-
PMID:21527671
-
De Lay N, Gottesman S. Role of polynucleotide phosphorylase in sRNA function in Escherichia coli. RNA 2011; 17:1172-89; PMID:21527671; http://dx.doi.org/10.1261/rna.2531211.
-
(2011)
RNA
, vol.17
, pp. 1172-1189
-
-
De Lay, N.1
Gottesman, S.2
-
43
-
-
0033853195
-
RNase II removes the oligo(A) tails that destabilize the rpsO mRNA of Escherichia coli
-
PMID:10943897
-
Marujo PE, Hajnsdorf E, Le Derout J, Andrade R, Arraiano CM, Régnier P. RNase II removes the oligo(A) tails that destabilize the rpsO mRNA of Escherichia coli. RNA 2000; 6:1185-93; PMID:10943897; http://dx.doi.org/10.1017/S135583820000073X.
-
(2000)
RNA
, vol.6
, pp. 1185-1193
-
-
Marujo, P.E.1
Hajnsdorf, E.2
Le Derout, J.3
Andrade, R.4
Arraiano, C.M.5
Régnier, P.6
-
44
-
-
50149103524
-
The Bacillus subtilis iron-sparing response is mediated by a Fur-regulated small RNA and three small, basic proteins
-
PMID:18697947
-
Gaballa A, Antelmann H, Aguilar C, Khakh SK, Song KB, Smaldone GT, et al. The Bacillus subtilis iron-sparing response is mediated by a Fur-regulated small RNA and three small, basic proteins. Proc Natl Acad Sci USA 2008; 105:11927-32; PMID:18697947; http://dx.doi.org/10.1073/pnas.0711752105.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 11927-11932
-
-
Gaballa, A.1
Antelmann, H.2
Aguilar, C.3
Khakh, S.K.4
Song, K.B.5
Smaldone, G.T.6
-
45
-
-
84860769484
-
Current knowledge on regulatory RNAs and their machineries in Staphylococcus aureus
-
PMID:22546940
-
Romilly C, Caldelari I, Parmentier D, Lioliou E, Romby P, Fechter P. Current knowledge on regulatory RNAs and their machineries in Staphylococcus aureus. RNA Biol 2012; 9:402-13; PMID:22546940; http://dx.doi.org/10.4161/rna. 20103.
-
(2012)
RNA Biol
, vol.9
, pp. 402-413
-
-
Romilly, C.1
Caldelari, I.2
Parmentier, D.3
Lioliou, E.4
Romby, P.5
Fechter, P.6
-
46
-
-
27144495430
-
Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover
-
PMID:16237448
-
Callaghan AJ, Marcaida MJ, Stead JA, McDowall KJ, Scott WG, Luisi BF. Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover. Nature 2005; 437:1187-91; PMID:16237448; http://dx.doi.org/10.1038/ nature04084.
-
(2005)
Nature
, vol.437
, pp. 1187-1191
-
-
Callaghan, A.J.1
Marcaida, M.J.2
Stead, J.A.3
McDowall, K.J.4
Scott, W.G.5
Luisi, B.F.6
-
47
-
-
70450230359
-
Substrate binding and active site residues in RNases E and G: Role of the 5′-sensor
-
PMID:19778900
-
Garrey SM, Blech M, Riffell JL, Hankins JS, Stickney LM, Diver M, et al. Substrate binding and active site residues in RNases E and G: role of the 5′-sensor. J Biol Chem 2009; 284:31843-50; PMID:19778900; http://dx.doi.org/10.1074/jbc.M109.063263.
-
(2009)
J Biol Chem
, vol.284
, pp. 31843-31850
-
-
Garrey, S.M.1
Blech, M.2
Riffell, J.L.3
Hankins, J.S.4
Stickney, L.M.5
Diver, M.6
-
48
-
-
84866788439
-
The seed region of a small RNA drives the controlled destruction of the target mRNA by the endoribonuclease RNase E
-
PMID:22902561
-
Bandyra KJ, Said N, Pfeiffer V, Górna MW, Vogel J, Luisi BF. The seed region of a small RNA drives the controlled destruction of the target mRNA by the endoribonuclease RNase E. Mol Cell 2012; 47:943-53; PMID:22902561; http://dx.doi.org/10.1016/j.molcel.2012.07.015.
-
(2012)
Mol Cell
, vol.47
, pp. 943-953
-
-
Bandyra, K.J.1
Said, N.2
Pfeiffer, V.3
Górna, M.W.4
Vogel, J.5
Luisi, B.F.6
-
49
-
-
84867577054
-
An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs
-
PMID:22922465
-
Chao Y, Papenfort K, Reinhardt R, Sharma CM, Vogel J. An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs. EMBO J 2012; 31:4005-19; PMID:22922465; http://dx.doi. org/10.1038/emboj.2012.229.
-
(2012)
EMBO J
, vol.31
, pp. 4005-4019
-
-
Chao, Y.1
Papenfort, K.2
Reinhardt, R.3
Sharma, C.M.4
Vogel, J.5
-
50
-
-
80052811506
-
RNA in pieces
-
PMID:21741109
-
Tuck AC, Tollervey D. RNA in pieces. Trends Genet 2011; 27:422-32; PMID:21741109; http://dx.doi.org/10.1016/j.tig.2011.06.001.
-
(2011)
Trends Genet
, vol.27
, pp. 422-432
-
-
Tuck, A.C.1
Tollervey, D.2
-
51
-
-
0037221712
-
Ectopic RNase E sites promote bypass of 5′-end-dependent mRNA decay in Escherichia coli
-
PMID:12492855
-
Baker KE, Mackie GA. Ectopic RNase E sites promote bypass of 5′-end-dependent mRNA decay in Escherichia coli. Mol Microbiol 2003; 47:75-88; PMID:12492855; http://dx.doi.org/10.1046/j.1365-2958.2003.03292.x.
-
(2003)
Mol Microbiol
, vol.47
, pp. 75-88
-
-
Baker, K.E.1
Mackie, G.A.2
-
52
-
-
64049090242
-
Killer and protective ribosomes
-
PMID:19215779
-
Dreyfus M. Killer and protective ribosomes. Prog Mol Biol Transl Sci 2009; 85:423-66; PMID:19215779; http://dx.doi.org/10.1016/S0079-6603(08)00811-8.
-
(2009)
Prog Mol Biol Transl Sci
, vol.85
, pp. 423-466
-
-
Dreyfus, M.1
-
53
-
-
0032544304
-
In the absence of translation, RNase E can bypass 5′ mRNA stabilizers in Escherichia coli
-
PMID:9735284
-
Joyce SA, Dreyfus M. In the absence of translation, RNase E can bypass 5′ mRNA stabilizers in Escherichia coli. J Mol Biol 1998; 282:241-54; PMID:9735284; http://dx.doi.org/10.1006/jmbi.1998.2027.
-
(1998)
J Mol Biol
, vol.282
, pp. 241-254
-
-
Joyce, S.A.1
Dreyfus, M.2
-
54
-
-
0036047092
-
Function in Escherichia coli of the non-catalytic part of RNase E: Role in the degradation of ribosome-free mRNA
-
PMID:12207692
-
Leroy A, Vanzo NF, Sousa S, Dreyfus M, Carpousis AJ. Function in Escherichia coli of the non-catalytic part of RNase E: role in the degradation of ribosome-free mRNA. Mol Microbiol 2002; 45:1231-43; PMID:12207692; http://dx.doi.org/10.1046/j.1365-2958.2002.03104.x.
-
(2002)
Mol Microbiol
, vol.45
, pp. 1231-1243
-
-
Leroy, A.1
Vanzo, N.F.2
Sousa, S.3
Dreyfus, M.4
Carpousis, A.J.5
-
55
-
-
0033048415
-
The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo
-
PMID:10411735
-
Lopez PJ, Marchand I, Joyce SA, Dreyfus M. The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo. Mol Microbiol 1999; 33:188-99; PMID:10411735; http://dx.doi.org/10.1046/j.1365-2958.1999.01465.x.
-
(1999)
Mol Microbiol
, vol.33
, pp. 188-199
-
-
Lopez, P.J.1
Marchand, I.2
Joyce, S.A.3
Dreyfus, M.4
-
56
-
-
83355169557
-
Two pathways for RNase E action in Escherichia coli in vivo and bypass of its essentiality in mutants defective for Rho-dependent transcription termination
-
PMID:22026368
-
Anupama K, Leela JK, Gowrishankar J. Two pathways for RNase E action in Escherichia coli in vivo and bypass of its essentiality in mutants defective for Rho-dependent transcription termination. Mol Microbiol 2011; 82:1330-48; PMID:22026368; http://dx.doi.org/10.1111/j.1365-2958.2011.07895.x.
-
(2011)
Mol Microbiol
, vol.82
, pp. 1330-1348
-
-
Anupama, K.1
Leela, J.K.2
Gowrishankar, J.3
-
57
-
-
83355166284
-
A tale of two mRNA degradation pathways mediated by RNase E
-
PMID:22074454
-
Bouvier M, Carpousis AJ. A tale of two mRNA degradation pathways mediated by RNase E. Mol Microbiol 2011; 82:1305-10; PMID:22074454; http://dx.doi.org/ 10.1111/j.1365-2958.2011.07894.x.
-
(2011)
Mol Microbiol
, vol.82
, pp. 1305-1310
-
-
Bouvier, M.1
Carpousis, A.J.2
-
58
-
-
79958839563
-
Roles of the 5′-phosphate sensor domain in RNase E
-
PMID:21518390
-
Garrey SM, Mackie GA. Roles of the 5′-phosphate sensor domain in RNase E. Mol Microbiol 2011; 80:1613-24; PMID:21518390; http://dx.doi.org/10. 1111/j.1365-2958.2011.07670.x.
-
(2011)
Mol Microbiol
, vol.80
, pp. 1613-1624
-
-
Garrey, S.M.1
Mackie, G.A.2
-
59
-
-
0036719292
-
mRNA decay in Escherichia coli comes of age
-
discussion 4657; PMID:12169588
-
Kushner SR. mRNA decay in Escherichia coli comes of age. J Bacteriol 2002; 184:4658-65, discussion 4657; PMID:12169588; http://dx.doi.org/10.1128/JB. 184.17.4658-4665.2002.
-
(2002)
J Bacteriol
, vol.184
, pp. 4658-4665
-
-
Kushner, S.R.1
-
60
-
-
0142030030
-
Genomic analysis in Escherichia coli demonstrates differential roles for polynucleotide phosphorylase and RNase II in mRNA abundance and decay
-
PMID:14617186
-
Mohanty BK, Kushner SR. Genomic analysis in Escherichia coli demonstrates differential roles for polynucleotide phosphorylase and RNase II in mRNA abundance and decay. Mol Microbiol 2003; 50:645-58; PMID:14617186; http://dx.doi.org/10.1046/j.1365-2958.2003.03724.x.
-
(2003)
Mol Microbiol
, vol.50
, pp. 645-658
-
-
Mohanty, B.K.1
Kushner, S.R.2
-
61
-
-
7044285063
-
The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli
-
PMID:15522076
-
Mohanty BK, Maples VF, Kushner SR. The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli. Mol Microbiol 2004; 54:905-20; PMID:15522076; http://dx.doi.org/10.1111/j.1365-2958.2004.04337.x.
-
(2004)
Mol Microbiol
, vol.54
, pp. 905-920
-
-
Mohanty, B.K.1
Maples, V.F.2
Kushner, S.R.3
-
62
-
-
0028986829
-
Polyadenylylation helps regulate mRNA decay in Escherichia coli
-
PMID:7534403
-
O'Hara EB, Chekanova JA, Ingle CA, Kushner ZR, Peters E, Kushner SR. Polyadenylylation helps regulate mRNA decay in Escherichia coli. Proc Natl Acad Sci USA 1995; 92:1807-11; PMID:7534403; http://dx.doi.org/10.1073/pnas.92.6. 1807.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 1807-1811
-
-
O'Hara, E.B.1
Chekanova, J.A.2
Ingle, C.A.3
Kushner, Z.R.4
Peters, E.5
Kushner, S.R.6
-
63
-
-
0036500552
-
RNA quality control: Degradation of defective transfer RNA
-
PMID:11867541
-
Li Z, Reimers S, Pandit S, Deutscher MP. RNA quality control: degradation of defective transfer RNA. EMBO J 2002; 21:1132-8; PMID:11867541; http://dx.doi.org/10.1093/emboj/21.5.1132.
-
(2002)
EMBO J
, vol.21
, pp. 1132-1138
-
-
Li, Z.1
Reimers, S.2
Pandit, S.3
Deutscher, M.P.4
-
64
-
-
84861560266
-
Polyadenylation helps regulate functional tRNA levels in Escherichia coli
-
PMID:22287637
-
Mohanty BK, Maples VF, Kushner SR. Polyadenylation helps regulate functional tRNA levels in Escherichia coli. Nucleic Acids Res 2012; 40:4589-603; PMID:22287637; http://dx.doi.org/10.1093/nar/gks006.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 4589-4603
-
-
Mohanty, B.K.1
Maples, V.F.2
Kushner, S.R.3
-
65
-
-
58249102413
-
The poly(A)-dependent degradation pathway of rpsO mRNA is primarily mediated by RNase R
-
PMID:19103951
-
Andrade JM, Hajnsdorf E, Régnier P, Arraiano CM. The poly(A)-dependent degradation pathway of rpsO mRNA is primarily mediated by RNase R. RNA 2009; 15:316-26; PMID:19103951; http://dx.doi.org/10.1261/rna. 1197309.
-
(2009)
RNA
, vol.15
, pp. 316-326
-
-
Andrade, J.M.1
Hajnsdorf, E.2
Régnier, P.3
Arraiano, C.M.4
-
66
-
-
12344330602
-
An important role for RNase R in mRNA decay
-
PMID:15664199
-
Cheng ZF, Deutscher MP. An important role for RNase R in mRNA decay. Mol Cell 2005; 17:313-8; PMID:15664199; http://dx.doi.org/10.1016/j.molcel.2004.11. 048.
-
(2005)
Mol Cell
, vol.17
, pp. 313-318
-
-
Cheng, Z.F.1
Deutscher, M.P.2
-
67
-
-
84869082850
-
Transcriptome-wide analysis of exosome targets
-
PMID:23000172
-
Schneider C, Kudla G, Wlotzka W, Tuck A, Tollervey D. Transcriptome-wide analysis of exosome targets. Mol Cell 2012; 48:422-33; PMID:23000172; http://dx.doi.org/10.1016/j.molcel.2012.08.013.
-
(2012)
Mol Cell
, vol.48
, pp. 422-433
-
-
Schneider, C.1
Kudla, G.2
Wlotzka, W.3
Tuck, A.4
Tollervey, D.5
-
68
-
-
0027383520
-
The stationary phase of the bacterial life cycle
-
PMID:8257118
-
Kolter R, Siegele DA, Tormo A. The stationary phase of the bacterial life cycle. Annu Rev Microbiol 1993; 47:855-74; PMID:8257118; http://dx.doi. org/10.1146/annurev.mi.47.100193.004231.
-
(1993)
Annu Rev Microbiol
, vol.47
, pp. 855-874
-
-
Kolter, R.1
Siegele, D.A.2
Tormo, A.3
-
69
-
-
70350468873
-
The response regulator SprE (RssB) modulates polyadenylation and mRNA stability in Escherichia coli
-
PMID:19767441
-
Carabetta VJ, Mohanty BK, Kushner SR, Silhavy TJ. The response regulator SprE (RssB) modulates polyadenylation and mRNA stability in Escherichia coli. J Bacteriol 2009; 191:6812-21; PMID:19767441; http://dx.doi.org/10.1128/JB.00870- 09.
-
(2009)
J Bacteriol
, vol.191
, pp. 6812-6821
-
-
Carabetta, V.J.1
Mohanty, B.K.2
Kushner, S.R.3
Silhavy, T.J.4
-
70
-
-
84055212205
-
Post-translational modification of RNase R is regulated by stress-dependent reduction in the acetylating enzyme Pka (YfiQ)
-
PMID:22124017
-
Liang W, Deutscher MP. Post-translational modification of RNase R is regulated by stress-dependent reduction in the acetylating enzyme Pka (YfiQ). RNA 2012; 18:37-41; PMID:22124017; http://dx.doi. org/10.1261/rna.030213.111.
-
(2012)
RNA
, vol.18
, pp. 37-41
-
-
Liang, W.1
Deutscher, M.P.2
-
71
-
-
80053595149
-
Acetylation regulates the stability of a bacterial protein: Growth stage-dependent modification of RNase R
-
PMID:21981926
-
Liang W, Malhotra A, Deutscher MP. Acetylation regulates the stability of a bacterial protein: growth stage-dependent modification of RNase R. Mol Cell 2011; 44:160-6; PMID:21981926; http://dx.doi.org/10.1016/j.molcel.2011.06.037.
-
(2011)
Mol Cell
, vol.44
, pp. 160-166
-
-
Liang, W.1
Malhotra, A.2
Deutscher, M.P.3
-
72
-
-
27144467868
-
Elevation of RNase R in response to multiple stress conditions
-
PMID:16135521
-
Chen C, Deutscher MP. Elevation of RNase R in response to multiple stress conditions. J Biol Chem 2005; 280:34393-6; PMID:16135521; http://dx.doi.org/10. 1074/jbc.C500333200.
-
(2005)
J Biol Chem
, vol.280
, pp. 34393-34396
-
-
Chen, C.1
Deutscher, M.P.2
-
73
-
-
77149120797
-
Acetylation of metabolic enzymes coordinates carbon source utilization and metabolic flux
-
PMID:20167787
-
Wang Q, Zhang Y, Yang C, Xiong H, Lin Y, Yao J, et al. Acetylation of metabolic enzymes coordinates carbon source utilization and metabolic flux. Science 2010; 327:1004-7; PMID:20167787; http://dx.doi.org/10.1126/science. 1179687.
-
(2010)
Science
, vol.327
, pp. 1004-1007
-
-
Wang, Q.1
Zhang, Y.2
Yang, C.3
Xiong, H.4
Lin, Y.5
Yao, J.6
-
74
-
-
79954608650
-
Polynucleotide phosphorylase activity may be modulated by metabolites in Escherichia coli
-
PMID:21324911
-
Nurmohamed S, Vincent HA, Titman CM, Chandran V, Pears MR, Du D, et al. Polynucleotide phosphorylase activity may be modulated by metabolites in Escherichia coli. J Biol Chem 2011; 286:14315-23; PMID:21324911; http://dx.doi.org/10.1074/jbc.M110.200741.
-
(2011)
J Biol Chem
, vol.286
, pp. 14315-14323
-
-
Nurmohamed, S.1
Vincent, H.A.2
Titman, C.M.3
Chandran, V.4
Pears, M.R.5
Du, D.6
-
75
-
-
33745885282
-
RNase E maintenance of proper FtsZ/FtsA ratio required for nonfilamentous growth of Escherichia coli cells but not for colony-forming ability
-
PMID:16816186
-
Tamura M, Lee K, Miller CA, Moore CJ, Shirako Y, Kobayashi M, et al. RNase E maintenance of proper FtsZ/FtsA ratio required for nonfilamentous growth of Escherichia coli cells but not for colony-forming ability. J Bacteriol 2006; 188:5145-52; PMID:16816186; http://dx.doi.org/10.1128/JB.00367-06.
-
(2006)
J Bacteriol
, vol.188
, pp. 5145-5152
-
-
Tamura, M.1
Lee, K.2
Miller, C.A.3
Moore, C.J.4
Shirako, Y.5
Kobayashi, M.6
-
76
-
-
0029744210
-
RNase E processing of essential cell division genes mRNA in Escherichia coli
-
PMID:8760895
-
Cam K, Rome G, Krisch HM, Bouché JP. RNase E processing of essential cell division genes mRNA in Escherichia coli. Nucleic Acids Res 1996; 24:3065-70; PMID:8760895; http://dx.doi.org/10.1093/nar/24.15.3065.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 3065-3070
-
-
Cam, K.1
Rome, G.2
Krisch, H.M.3
Bouché, J.P.4
-
77
-
-
0025355785
-
Escherichia coli cell division inhibitor DicF-RNA of the dicB operon. Evidence for its generation in vivo by transcription termination and by RNase III and RNase E-dependent processing
-
PMID:1691299
-
Faubladier M, Cam K, Bouché JP. Escherichia coli cell division inhibitor DicF-RNA of the dicB operon. Evidence for its generation in vivo by transcription termination and by RNase III and RNase E-dependent processing. J Mol Biol 1990; 212:461-71; PMID:1691299; http://dx.doi.org/10.1016/0022-2836(90) 90325-G.
-
(1990)
J Mol Biol
, vol.212
, pp. 461-471
-
-
Faubladier, M.1
Cam, K.2
Bouché, J.P.3
-
78
-
-
0035172545
-
Bacteriophage T7 protein kinase phosphorylates RNase E and stabilizes mRNAs synthesized by T7 RNA polymerase
-
PMID:11722741
-
Marchand I, Nicholson AW, Dreyfus M. Bacteriophage T7 protein kinase phosphorylates RNase E and stabilizes mRNAs synthesized by T7 RNA polymerase. Mol Microbiol 2001; 42:767-76; PMID:11722741; http://dx.doi.org/10.1046/j.1365- 2958.2001.02668.x.
-
(2001)
Mol Microbiol
, vol.42
, pp. 767-776
-
-
Marchand, I.1
Nicholson, A.W.2
Dreyfus, M.3
-
79
-
-
79551624663
-
A processed noncoding RNA regulates an altruistic bacterial antiviral system
-
PMID:21240270
-
Blower TR, Pei XY, Short FL, Fineran PC, Humphreys DP, Luisi BF, et al. A processed noncoding RNA regulates an altruistic bacterial antiviral system. Nat Struct Mol Biol 2011; 18:185-90; PMID:21240270; http://dx.doi.org/10.1038/nsmb. 1981.
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 185-190
-
-
Blower, T.R.1
Pei, X.Y.2
Short, F.L.3
Fineran, P.C.4
Humphreys, D.P.5
Luisi, B.F.6
-
80
-
-
84864487705
-
Identification and classification of bacterial Type III toxin-antitoxin systems encoded in chromosomal and plasmid genomes
-
PMID:22434880
-
Blower TR, Short FL, Rao F, Mizuguchi K, Pei XY, Fineran PC, et al. Identification and classification of bacterial Type III toxin-antitoxin systems encoded in chromosomal and plasmid genomes. Nucleic Acids Res 2012; 40:6158-73; PMID:22434880; http://dx.doi.org/10.1093/nar/gks231.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 6158-6173
-
-
Blower, T.R.1
Short, F.L.2
Rao, F.3
Mizuguchi, K.4
Pei, X.Y.5
Fineran, P.C.6
-
81
-
-
58849150431
-
The phage abortive infection system, ToxIN, functions as a protein-RNA toxinantitoxin pair
-
PMID:19124776
-
Fineran PC, Blower TR, Foulds IJ, Humphreys DP, Lilley KS, Salmond GP. The phage abortive infection system, ToxIN, functions as a protein-RNA toxinantitoxin pair. Proc Natl Acad Sci USA 2009; 106:894-9; PMID:19124776; http://dx.doi.org/10.1073/pnas.0808832106.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 894-899
-
-
Fineran, P.C.1
Blower, T.R.2
Foulds, I.J.3
Humphreys, D.P.4
Lilley, K.S.5
Salmond, G.P.6
-
82
-
-
84872541994
-
Selectivity and self-assembly in the control of a bacterial toxin by an antitoxic noncoding RNA pseudoknot
-
PMID:23267117
-
Short FL, Pei XY, Blower TR, Ong SL, Fineran PC, Luisi BF, et al. Selectivity and self-assembly in the control of a bacterial toxin by an antitoxic noncoding RNA pseudoknot. Proc Natl Acad Sci USA 2013; 110:E241-9; PMID:23267117; http://dx.doi.org/10.1073/pnas.1216039110.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
-
-
Short, F.L.1
Pei, X.Y.2
Blower, T.R.3
Ong, S.L.4
Fineran, P.C.5
Luisi, B.F.6
-
83
-
-
84872241785
-
Bacterial persistence and toxin-antitoxin loci
-
PMID:22994490
-
Gerdes K, Maisonneuve E. Bacterial persistence and toxin-antitoxin loci. Annu Rev Microbiol 2012; 66:103-23; PMID:22994490; http://dx.doi.org/10.1146/ annurev-micro-092611-150159.
-
(2012)
Annu Rev Microbiol
, vol.66
, pp. 103-123
-
-
Gerdes, K.1
Maisonneuve, E.2
-
84
-
-
49649114086
-
Small CRISPR RNAs guide antiviral defense in prokaryotes
-
PMID:18703739
-
Brouns SJ, Jore MM, Lundgren M, Westra ER, Slijkhuis RJ, Snijders AP, et al. Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 2008; 321:960-4; PMID:18703739; http://dx.doi.org/10.1126/science.1159689.
-
(2008)
Science
, vol.321
, pp. 960-964
-
-
Brouns, S.J.1
Jore, M.M.2
Lundgren, M.3
Westra, E.R.4
Slijkhuis, R.J.5
Snijders, A.P.6
-
85
-
-
84862190458
-
Csy4 relies on an unusual catalytic dyad to position and cleave CRISPR RNA
-
PMID:22522703
-
Haurwitz RE, Sternberg SH, Doudna JA. Csy4 relies on an unusual catalytic dyad to position and cleave CRISPR RNA. EMBO J 2012; 31:2824-32; PMID:22522703; http://dx.doi.org/10.1038/emboj.2012.107.
-
(2012)
EMBO J
, vol.31
, pp. 2824-2832
-
-
Haurwitz, R.E.1
Sternberg, S.H.2
Doudna, J.A.3
-
86
-
-
84857097177
-
RNA-guided genetic silencing systems in bacteria and archaea
-
PMID:22337052
-
Wiedenheft B, Sternberg SH, Doudna JA. RNA-guided genetic silencing systems in bacteria and archaea. Nature 2012; 482:331-8; PMID:22337052; http://dx.doi.org/10.1038/nature10886.
-
(2012)
Nature
, vol.482
, pp. 331-338
-
-
Wiedenheft, B.1
Sternberg, S.H.2
Doudna, J.A.3
-
87
-
-
84856778250
-
Structure and mechanism of the CMR complex for CRISPR-mediated antiviral immunity
-
PMID:22227115
-
Zhang J, Rouillon C, Kerou M, Reeks J, Brugger K, Graham S, et al. Structure and mechanism of the CMR complex for CRISPR-mediated antiviral immunity. Mol Cell 2012; 45:303-13; PMID:22227115; http://dx.doi.org/10.1016/j. molcel.2011.12.013.
-
(2012)
Mol Cell
, vol.45
, pp. 303-313
-
-
Zhang, J.1
Rouillon, C.2
Kerou, M.3
Reeks, J.4
Brugger, K.5
Graham, S.6
-
88
-
-
27644482393
-
Lost in translation: The influence of ribosomes on bacterial mRNA decay
-
PMID:16264189
-
Deana A, Belasco JG. Lost in translation: the influence of ribosomes on bacterial mRNA decay. Genes Dev 2005; 19:2526-33; PMID:16264189; http://dx.doi.org/10.1101/gad.1348805.
-
(2005)
Genes Dev
, vol.19
, pp. 2526-2533
-
-
Deana, A.1
Belasco, J.G.2
-
89
-
-
55349119169
-
Mutants of the RNA-processing enzyme RNase E reverse the extreme slow-growth phenotype caused by a mutant translation factor EF-Tu
-
PMID:18990188
-
Hammarlöf DL, Hughes D. Mutants of the RNA-processing enzyme RNase E reverse the extreme slow-growth phenotype caused by a mutant translation factor EF-Tu. Mol Microbiol 2008; 70:1194-209; PMID:18990188; http://dx.doi.org/10. 1111/j.1365-2958.2008.06472.x.
-
(2008)
Mol Microbiol
, vol.70
, pp. 1194-1209
-
-
Hammarlöf, D.L.1
Hughes, D.2
-
90
-
-
84870255362
-
Influence of translation on RppH-dependent mRNA degradation in Escherichia coli
-
PMID:22989003
-
Richards J, Luciano DJ, Belasco JG. Influence of translation on RppH-dependent mRNA degradation in Escherichia coli. Mol Microbiol 2012; 86:1063-72; PMID:22989003; http://dx.doi.org/10.1111/mmi.12040.
-
(2012)
Mol Microbiol
, vol.86
, pp. 1063-1072
-
-
Richards, J.1
Luciano, D.J.2
Belasco, J.G.3
-
91
-
-
84862765893
-
Superresolution imaging of ribosomes and RNA polymerase in live Escherichia coli cells
-
PMID:22624875
-
Bakshi S, Siryaporn A, Goulian M, Weisshaar JC. Superresolution imaging of ribosomes and RNA polymerase in live Escherichia coli cells. Mol Microbiol 2012; 85:21-38; PMID:22624875; http://dx.doi.org/10.1111/j.1365-2958.2012.08081. x.
-
(2012)
Mol Microbiol
, vol.85
, pp. 21-38
-
-
Bakshi, S.1
Siryaporn, A.2
Goulian, M.3
Weisshaar, J.C.4
-
92
-
-
54249138245
-
The RNase E of Escherichia coli is a membrane-binding protein
-
PMID:18976283
-
Khemici V, Poljak L, Luisi BF, Carpousis AJ. The RNase E of Escherichia coli is a membrane-binding protein. Mol Microbiol 2008; 70:799-813; PMID:18976283.
-
(2008)
Mol Microbiol
, vol.70
, pp. 799-813
-
-
Khemici, V.1
Poljak, L.2
Luisi, B.F.3
Carpousis, A.J.4
-
93
-
-
81755184410
-
The Levinthal paradox of the interactome
-
PMID:21987416
-
Tompa P, Rose GD. The Levinthal paradox of the interactome. Protein Sci 2011; 20:2074-9; PMID:21987416; http://dx.doi.org/10.1002/pro.747.
-
(2011)
Protein Sci
, vol.20
, pp. 2074-2079
-
-
Tompa, P.1
Rose, G.D.2
-
94
-
-
84856023505
-
Gene order and chromosome dynamics coordinate spatiotemporal gene expression during the bacterial growth cycle
-
PMID:22184251
-
Sobetzko P, Travers A, Muskhelishvili G. Gene order and chromosome dynamics coordinate spatiotemporal gene expression during the bacterial growth cycle. Proc Natl Acad Sci USA 2012; 109:E42-50; PMID:22184251; http://dx.doi.org/10.1073/pnas.1108229109.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
-
-
Sobetzko, P.1
Travers, A.2
Muskhelishvili, G.3
-
95
-
-
84857395611
-
Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment
-
PMID:22264825
-
Bumgarner SL, Neuert G, Voight BF, Symbor-Nagrabska A, Grisafi P, van Oudenaarden A, et al. Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment. Mol Cell 2012; 45:470-82; PMID:22264825; http://dx.doi.org/10.1016/ j.molcel.2011.11.029.
-
(2012)
Mol Cell
, vol.45
, pp. 470-482
-
-
Bumgarner, S.L.1
Neuert, G.2
Voight, B.F.3
Symbor-Nagrabska, A.4
Grisafi, P.5
Van Oudenaarden, A.6
-
96
-
-
84857406185
-
An RNA reset button
-
PMID:22365825
-
Tuck AC, Tollervey D. An RNA reset button. Mol Cell 2012; 45:435-6; PMID:22365825; http://dx.doi.org/10.1016/j.molcel.2012.02.001.
-
(2012)
Mol Cell
, vol.45
, pp. 435-436
-
-
Tuck, A.C.1
Tollervey, D.2
-
97
-
-
84863631177
-
piRNAs initiate an epigenetic memory of nonself RNA in the C. elegans germline
-
PMID:22738726
-
Shirayama M, Seth M, Lee HC, Gu W, Ishidate T, Conte D Jr., et al. piRNAs initiate an epigenetic memory of nonself RNA in the C. elegans germline. Cell 2012; 150:65-77; PMID:22738726; http://dx.doi.org/10.1016/j.cell.2012.06.015.
-
(2012)
Cell
, vol.150
, pp. 65-77
-
-
Shirayama, M.1
Seth, M.2
Lee, H.C.3
Gu, W.4
Ishidate, T.5
Conte Jr., D.6
-
98
-
-
72049095718
-
Structure of Escherichia coli Hfq bound to polyriboadenylate RNA
-
PMID:19889981
-
Link TM, Valentin-Hansen P, Brennan RG. Structure of Escherichia coli Hfq bound to polyriboadenylate RNA. Proc Natl Acad Sci USA 2009; 106:19292-7; PMID:19889981; http://dx.doi.org/10.1073/pnas.0908744106.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 19292-19297
-
-
Link, T.M.1
Valentin-Hansen, P.2
Brennan, R.G.3
-
99
-
-
80051962605
-
Structural basis for RNA 3′-end recognition by Hfq
-
PMID:21737752
-
Sauer E, Weichenrieder O. Structural basis for RNA 3′-end recognition by Hfq. Proc Natl Acad Sci USA 2011; 108:13065-70; PMID:21737752; http://dx.doi.org/10.1073/pnas.1103420108.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 13065-13070
-
-
Sauer, E.1
Weichenrieder, O.2
-
100
-
-
84861792252
-
Characterization of Vibrio cholerae Hfq provides novel insights into the role of the Hfq C-terminal region
-
PMID:22484176
-
Vincent HA, Henderson CA, Ragan TJ, Garza-Garcia A, Cary PD, Gowers DM, et al. Characterization of Vibrio cholerae Hfq provides novel insights into the role of the Hfq C-terminal region. J Mol Biol 2012; 420:56-69; PMID:22484176; http://dx.doi.org/10.1016/j.jmb.2012.03.028.
-
(2012)
J Mol Biol
, vol.420
, pp. 56-69
-
-
Vincent, H.A.1
Henderson, C.A.2
Ragan, T.J.3
Garza-Garcia, A.4
Cary, P.D.5
Gowers, D.M.6
-
101
-
-
79959469361
-
Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq
-
PMID:21330354
-
Beich-Frandsen M, Vecerek B, Konarev PV, Sjöblom B, Kloiber K, Hämmerle H, et al. Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq. Nucleic Acids Res 2011; 39:4900-15; PMID:21330354.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 4900-4915
-
-
Beich-Frandsen, M.1
Vecerek, B.2
Konarev, P.V.3
Sjöblom, B.4
Kloiber, K.5
Hämmerle, H.6
-
102
-
-
38349138513
-
The C-terminal domain of Escherichia coli Hfq is required for regulation
-
PMID:18000007
-
Vecerek B, Rajkowitsch L, Sonnleitner E, Schroeder R, Bläsi U. The C-terminal domain of Escherichia coli Hfq is required for regulation. Nucleic Acids Res 2008; 36:133-43; PMID:18000007; http://dx.doi.org/10.1093/nar/gkm985.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 133-143
-
-
Vecerek, B.1
Rajkowitsch, L.2
Sonnleitner, E.3
Schroeder, R.4
Bläsi, U.5
-
103
-
-
84862232515
-
Small RNA binding to the lateral surface of Hfq hexamers and structural rearrangements upon mRNA target recognition
-
PMID:22645344
-
Sauer E, Schmidt S, Weichenrieder O. Small RNA binding to the lateral surface of Hfq hexamers and structural rearrangements upon mRNA target recognition. Proc Natl Acad Sci USA 2012; 109:9396-401; PMID:22645344; http://dx.doi.org/10.1073/pnas.1202521109.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 9396-9401
-
-
Sauer, E.1
Schmidt, S.2
Weichenrieder, O.3
|