메뉴 건너뛰기




Volumn 6, Issue 8, 2000, Pages 1185-1193

RNase II removes the oligo(A) tails that destabilize the rpsO mRNA of Escherichia coli

Author keywords

mRNA decay; mRNA stability; Poly(A) polymerase I; Poly(A) tails; Polyadenylation; Polynucleotide phosphorylase; RNase II

Indexed keywords

BACTERIAL ENZYME; EXORIBONUCLEASE; MESSENGER RNA; POLYNUCLEOTIDE ADENYLYLTRANSFERASE; POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE; RIBONUCLEASE; RIBONUCLEASE II; UNCLASSIFIED DRUG;

EID: 0033853195     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S135583820000073X     Document Type: Article
Times cited : (77)

References (46)
  • 1
    • 0024095739 scopus 로고
    • Stabilization of discrete mRNA breakdown products in ams pnp rnb multiple mutant of Escherichia coli K 12
    • Arraiano CM, Yancey SD, Kushner SR. 1988. Stabilization of discrete mRNA breakdown products in ams pnp rnb multiple mutant of Escherichia coli K 12. J Bacteriol 170:4625-4633.
    • (1988) J Bacteriol , vol.170 , pp. 4625-4633
    • Arraiano, C.M.1    Yancey, S.D.2    Kushner, S.R.3
  • 2
    • 0033548140 scopus 로고    scopus 로고
    • Polyadenylation promotes degradation of 3'-structured RNA by the Escherichia coli mRNA degradosome in vitro
    • Blum E, Carpousis AJ, Higgins CF. 1999. Polyadenylation promotes degradation of 3'-structured RNA by the Escherichia coli mRNA degradosome in vitro. J Biol Chem 274:4009-4016.
    • (1999) J Biol Chem , vol.274 , pp. 4009-4016
    • Blum, E.1    Carpousis, A.J.2    Higgins, C.F.3
  • 3
    • 0028269435 scopus 로고
    • Co-purification of E. coli RNase E and PNPase: Evidence for a specific association between two enzymes important in RNA processing and degradation
    • Carpousis AJ, Van Houwe G, Ehretsmann C, Krisch HM. 1994. Co-purification of E. coli RNase E and PNPase: Evidence for a specific association between two enzymes important in RNA processing and degradation. Cell 76:889-900.
    • (1994) Cell , vol.76 , pp. 889-900
    • Carpousis, A.J.1    Van Houwe, G.2    Ehretsmann, C.3    Krisch, H.M.4
  • 4
    • 0030041546 scopus 로고    scopus 로고
    • Overexpression, purification and properties of Escherichia coli ribonuclease II
    • Coburn GA, Mackie GA. 1996. Overexpression, purification and properties of Escherichia coli ribonuclease II. J Biol Chem 271:1048-1053.
    • (1996) J Biol Chem , vol.271 , pp. 1048-1053
    • Coburn, G.A.1    Mackie, G.A.2
  • 5
    • 0032569032 scopus 로고    scopus 로고
    • Reconstitution of the degradation of the mRNA for ribosomal protein S20 with purified enzymes
    • Coburn GA, Mackie GA. 1998. Reconstitution of the degradation of the mRNA for ribosomal protein S20 with purified enzymes. J Mol Biol 279:1061-1074.
    • (1998) J Mol Biol , vol.279 , pp. 1061-1074
    • Coburn, G.A.1    Mackie, G.A.2
  • 6
    • 0032617132 scopus 로고    scopus 로고
    • Degradation of mRNA in Escherichia coli: An old problem with some new twists
    • Coburn GA, Mackie GA. 1999. Degradation of mRNA in Escherichia coli: An old problem with some new twists. Prog Nucleic Acid Res Mol Biol 62:55-108.
    • (1999) Prog Nucleic Acid Res Mol Biol , vol.62 , pp. 55-108
    • Coburn, G.A.1    Mackie, G.A.2
  • 7
    • 0026334860 scopus 로고
    • Enzymatic basis for hydrolytic versus phosphorolytic mRNA degradation in Escherichia coli and Bacillus subtilis
    • Deutscher MP, Reuven NB. 1991. Enzymatic basis for hydrolytic versus phosphorolytic mRNA degradation in Escherichia coli and Bacillus subtilis. Proc Natl Acad Sci USA 88:3277-3280.
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 3277-3280
    • Deutscher, M.P.1    Reuven, N.B.2
  • 8
    • 0003395950 scopus 로고
    • Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12
    • Donovan WP, Kushner SR. 1986. Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12. Proc Natl Acad Sci USA 83:120-124.
    • (1986) Proc Natl Acad Sci USA , vol.83 , pp. 120-124
    • Donovan, W.P.1    Kushner, S.R.2
  • 9
    • 0026559344 scopus 로고
    • Specificity of Escherichia coli endoribonuclease E: In vivo and in vitro analysis of mutants in a bacteriophage T4 mRNA processing site
    • Ehretsmann CP, Carpousis AJ, Krisch HM. 1992. Specificity of Escherichia coli endoribonuclease E: In vivo and in vitro analysis of mutants in a bacteriophage T4 mRNA processing site. Genes & Dev 6:149-159.
    • (1992) Genes & Dev , vol.6 , pp. 149-159
    • Ehretsmann, C.P.1    Carpousis, A.J.2    Krisch, H.M.3
  • 10
    • 77956904839 scopus 로고
    • Polynucleotide phosphorylase
    • Boyer PD, ed. New York: Academic Press
    • Godefroy-Colburn T, Grunberg-Manago M. 1972. Polynucleotide phosphorylase. In: Boyer PD, ed. The enzymes. New York: Academic Press, pp 533-574.
    • (1972) The Enzymes , pp. 533-574
    • Godefroy-Colburn, T.1    Grunberg-Manago, M.2
  • 11
    • 0033368475 scopus 로고    scopus 로고
    • Messenger RNA stability and its role in control of gene expression in bacteria and phages
    • Grunberg-Manago M. 1999. Messenger RNA stability and its role in control of gene expression in bacteria and phages. Annu Rev Genet 33:193-227.
    • (1999) Annu Rev Genet , vol.33 , pp. 193-227
    • Grunberg-Manago, M.1
  • 12
    • 0029825005 scopus 로고    scopus 로고
    • Multiple degradation pathways of the rpsO mRNA of Escherichia coli. RNase E interacts with the 5′ and 3′ extremities of the primary transcript
    • Hajnsdorf E, Braun F, Haugel-Nielsen J, Le Derout J, Régnier P. 1996. Multiple degradation pathways of the rpsO mRNA of Escherichia coli. RNase E interacts with the 5′ and 3′ extremities of the primary transcript. Biochimie 78:416-424.
    • (1996) Biochimie , vol.78 , pp. 416-424
    • Hajnsdorf, E.1    Braun, F.2    Haugel-Nielsen, J.3    Le Derout, J.4    Régnier, P.5
  • 14
    • 0028310432 scopus 로고
    • Nucleolytic inactivation and degradation of the RNase III processed pnp message encoding polynucleotide phosphorylase of Escherichia coli
    • Hajnsdorf E, Carpousis AJ, Régnier P. 1994a. Nucleolytic inactivation and degradation of the RNase III processed pnp message encoding polynucleotide phosphorylase of Escherichia coli. J Mol Biol 239:439-454.
    • (1994) J Mol Biol , vol.239 , pp. 439-454
    • Hajnsdorf, E.1    Carpousis, A.J.2    Régnier, P.3
  • 15
    • 0344389019 scopus 로고    scopus 로고
    • E. coli rpsO mRNA decay: RNase E processing at the beginning of the coding sequence stimulates Poly(A)-dependent degradation of the mRNA
    • Hajnsdorf E, Régnier P. 1999. E. coli rpsO mRNA decay: RNase E processing at the beginning of the coding sequence stimulates Poly(A)-dependent degradation of the mRNA. J Mol Biol 286: 1033-1043.
    • (1999) J Mol Biol , vol.286 , pp. 1033-1043
    • Hajnsdorf, E.1    Régnier, P.2
  • 16
    • 0034652188 scopus 로고    scopus 로고
    • Host factor Hfq of Escherichia coli stimulates elongation of poly(A) tails by poly(A) polymerase I
    • Hajnsdorf E, Régnier P. 2000. Host factor Hfq of Escherichia coli stimulates elongation of poly(A) tails by poly(A) polymerase I. Proc Natl Acad Sci USA 97:1501-1505.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 1501-1505
    • Hajnsdorf, E.1    Régnier, P.2
  • 17
    • 0028235826 scopus 로고
    • Roles of RNase E, RNase II and PNPase in the degradation of the rpsO transcripts of Escherichia coli: Stabilizing function of RNase II and evidence for efficient degradation in an ams-pnp-rnb mutant
    • Hajnsdorf E, Steier O, Coscoy L, Teysset L, Régnier P. 1994b. Roles of RNase E, RNase II and PNPase in the degradation of the rpsO transcripts of Escherichia coli: Stabilizing function of RNase II and evidence for efficient degradation in an ams-pnp-rnb mutant. EMBO J 13:3368-3377.
    • (1994) EMBO J , vol.13 , pp. 3368-3377
    • Hajnsdorf, E.1    Steier, O.2    Coscoy, L.3    Teysset, L.4    Régnier, P.5
  • 18
    • 0029891493 scopus 로고    scopus 로고
    • The rpsO mRNA of Escherichia coli is polyadenylated at multiple sites resulting from endonucleolytic processing and exonucleolytic degradation
    • Haugel-Nielsen J, Hajnsdorf E, Régnier P. 1996. The rpsO mRNA of Escherichia coli is polyadenylated at multiple sites resulting from endonucleolytic processing and exonucleolytic degradation. EMBO J 15:3144-3152.
    • (1996) EMBO J , pp. 3144-3152
    • Haugel-Nielsen, J.1    Hajnsdorf, E.2    Régnier, P.3
  • 19
    • 0002404647 scopus 로고
    • The role of 3′ end in mRNA stability and decay
    • Belasco JG, Brawerman G, eds. New York: Academic Press
    • Higgins CF, Causton HC, Dance GSC, Mudd EA. 1993. The role of 3′ end in mRNA stability and decay. In: Belasco JG, Brawerman G, eds. Control of messenger RNA stability. New York: Academic Press, pp 13-30.
    • (1993) Control of Messenger RNA Stability , pp. 13-30
    • Higgins, C.F.1    Causton, H.C.2    Dance, G.S.C.3    Mudd, E.A.4
  • 20
    • 0031952026 scopus 로고    scopus 로고
    • Poly(A) and poly(U) specific RNA 3′ tail shortening by E. coli ribonuclease E
    • Huang H, Liao J, Cohen SN. 1998. Poly(A) and poly(U) specific RNA 3′ tail shortening by E. coli ribonuclease E. Nature 391:99-102.
    • (1998) Nature , vol.391 , pp. 99-102
    • Huang, H.1    Liao, J.2    Cohen, S.N.3
  • 22
    • 0031230045 scopus 로고    scopus 로고
    • The position of site-directed cleavage of RNA using RNase H and 2'-O-methyl oligonucleotides is dependent on the enzyme source
    • Lapham J, Yu YT, Shu MD, Steitz JA, Crothers DM. 1997. The position of site-directed cleavage of RNA using RNase H and 2'-O-methyl oligonucleotides is dependent on the enzyme source. RNA 3:950-951.
    • (1997) RNA , vol.3 , pp. 950-951
    • Lapham, J.1    Yu, Y.T.2    Shu, M.D.3    Steitz, J.A.4    Crothers, D.M.5
  • 23
    • 0029151159 scopus 로고
    • The tRNA processing enzyme RNase T is essential for maturation of 5S RNA
    • Li Z, Deutscher MP. 1995. The tRNA processing enzyme RNase T is essential for maturation of 5S RNA. Proc Natl Acad Sci USA 92:6883-6886.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 6883-6886
    • Li, Z.1    Deutscher, M.P.2
  • 24
    • 0032539857 scopus 로고    scopus 로고
    • 3′ exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli
    • Li Z, Pandit S, Deutscher MP. 1998. 3′ exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli. Proc Natl Acad Sci USA 95:2856-2861.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 2856-2861
    • Li, Z.1    Pandit, S.2    Deutscher, M.P.3
  • 25
    • 0032951885 scopus 로고    scopus 로고
    • Maturation of 23S ribosomal RNA requires the exoribonuclease RNase T
    • Li Z, Pandit S, Deutscher MP. 1999. Maturation of 23S ribosomal RNA requires the exoribonuclease RNase T. RNA 5:139-146.
    • (1999) RNA , vol.5 , pp. 139-146
    • Li, Z.1    Pandit, S.2    Deutscher, M.P.3
  • 26
    • 0025740223 scopus 로고
    • mRNA degradation by processive 3′-5′ exonucleases in vitro and the implication for prokaryotic mRNA decay in vivo
    • McLaren RS, Newbury SF, Dance GSC, Causton HC, Higgins CF. 1991. mRNA degradation by processive 3′-5′ exonucleases in vitro and the implication for prokaryotic mRNA decay in vivo. J Mol Biol 221:81-95.
    • (1991) J Mol Biol , vol.221 , pp. 81-95
    • McLaren, R.S.1    Newbury, S.F.2    Dance, G.S.C.3    Causton, H.C.4    Higgins, C.F.5
  • 27
    • 0029976430 scopus 로고    scopus 로고
    • Proteins associated with RNase E in a multicomponent ribonucleolytic complex
    • Miczak A, Kaberdin VR, Wei C-L, Lin-Chao S. 1996. Proteins associated with RNase E in a multicomponent ribonucleolytic complex. Proc Natl Acad Sci USA 93:3865-3869.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 3865-3869
    • Miczak, A.1    Kaberdin, V.R.2    Wei, C.-L.3    Lin-Chao, S.4
  • 28
    • 0033457296 scopus 로고    scopus 로고
    • Analysis of the function of Escherichia coli poly(A) polymerase I in RNA metabolism
    • Mohanty BK, Kushner SR. 1999a. Analysis of the function of Escherichia coli poly(A) polymerase I in RNA metabolism. Mol Microbiol 34:1094-1108.
    • (1999) Mol Microbiol , vol.34 , pp. 1094-1108
    • Mohanty, B.K.1    Kushner, S.R.2
  • 29
    • 0033406278 scopus 로고    scopus 로고
    • Residual polyadenylation in poly(A) polymerase I (pcnB) mutants of Escherichia coli does not result from the activity encoded by the f310 gene
    • Mohanty BK, Kushner SR. 1999b. Residual polyadenylation in poly(A) polymerase I (pcnB) mutants of Escherichia coli does not result from the activity encoded by the f310 gene. Mol Microbiol 34: 1109-1119.
    • (1999) Mol Microbiol , vol.34 , pp. 1109-1119
    • Mohanty, B.K.1    Kushner, S.R.2
  • 30
    • 0025688893 scopus 로고
    • RNase E, an endoribonuclease, has a general role in the chemical decay of E. coli mRNA: Evidence that me and ams are the same genetic locus
    • Mudd EA, Krisch HM, Higgins CF. 1990. RNase E, an endoribonuclease, has a general role in the chemical decay of E. coli mRNA: Evidence that me and ams are the same genetic locus. Mol Microbiol 4:2127-2135.
    • (1990) Mol Microbiol , vol.4 , pp. 2127-2135
    • Mudd, E.A.1    Krisch, H.M.2    Higgins, C.F.3
  • 31
    • 0001899053 scopus 로고    scopus 로고
    • Escherichia coli ribonucleases-paradigms for understanding cellular RNA-metabolism and regulation
    • D'Alesio G, Riordan JF, eds. San Diego: Academic Press
    • Nicholson AW. 1997. Escherichia coli ribonucleases-paradigms for understanding cellular RNA-metabolism and regulation. In: D'Alesio G, Riordan JF, eds. Ribonucleases structures and functions. San Diego: Academic Press, pp 1-49.
    • (1997) Ribonucleases Structures and Functions , pp. 1-49
    • Nicholson, A.W.1
  • 32
    • 0342710962 scopus 로고
    • The processive degradation of individual polyribonucleotides chains. I. Escherichia coli ribonuclease II
    • Nossal NG, Singer MF. 1968. The processive degradation of individual polyribonucleotides chains. I. Escherichia coli ribonuclease II. J Biol Chem 252:8945-8949.
    • (1968) J Biol Chem , vol.252 , pp. 8945-8949
    • Nossal, N.G.1    Singer, M.F.2
  • 34
    • 0028076787 scopus 로고
    • Decay of the IS10 antisense RNA by 3′ exonucleases: Evidence that RNase II stabilizes RNA-OUT against PNPase attack
    • Pepe CM, Maslesa-Galic S, Simons RW. 1994. Decay of the IS10 antisense RNA by 3′ exonucleases: Evidence that RNase II stabilizes RNA-OUT against PNPase attack. Mol Microbiol 13:1133-1142.
    • (1994) Mol Microbiol , vol.13 , pp. 1133-1142
    • Pepe, C.M.1    Maslesa-Galic, S.2    Simons, R.W.3
  • 35
    • 0029922992 scopus 로고    scopus 로고
    • A DEAD-box RNA helicase in the Escherichia coli RNA degradosome
    • Py B, Higgins CF, Krisch HM, Carpousis AJ. 1996. A DEAD-box RNA helicase in the Escherichia coli RNA degradosome. Nature 381: 169-172.
    • (1996) Nature , vol.381 , pp. 169-172
    • Py, B.1    Higgins, C.F.2    Krisch, H.M.3    Carpousis, A.J.4
  • 36
    • 0242400018 scopus 로고    scopus 로고
    • Degradation of mRNA in bacteria: Emergence of ubiquitous features
    • Régnier P, Arraiano CM. 2000. Degradation of mRNA in bacteria: Emergence of ubiquitous features. BioEssays 22:235-244.
    • (2000) BioEssays , vol.22 , pp. 235-244
    • Régnier, P.1    Arraiano, C.M.2
  • 37
    • 0025649204 scopus 로고
    • RNase III cleavages in non-coding leaders of Escherichia coli transcripts control mRNA stability and genetic expression
    • Régnier P, Grunberg-Manago M. 1990. RNase III cleavages in non-coding leaders of Escherichia coli transcripts control mRNA stability and genetic expression. Biochimie 72:825-834.
    • (1990) Biochimie , vol.72 , pp. 825-834
    • Régnier, P.1    Grunberg-Manago, M.2
  • 38
    • 0025973574 scopus 로고
    • Decay of mRNA encoding ribosomal protein S15 of Escherichia coli is initiated by an RNase E-dependent endonucleolytic cleavage that removes the 3′ stabilizing stem and loop structure
    • Régnier P, Hajnsdorf E. 1991. Decay of mRNA encoding ribosomal protein S15 of Escherichia coli is initiated by an RNase E-dependent endonucleolytic cleavage that removes the 3′ stabilizing stem and loop structure. J Mol Biol 217:283-292.
    • (1991) J Mol Biol , vol.217 , pp. 283-292
    • Régnier, P.1    Hajnsdorf, E.2
  • 39
    • 0023041808 scopus 로고
    • Initiation, attenuation and RNase III processing of transcripts from the E. coli operon encoding ribosomal protein S15 and polynucleotide phosphorylase
    • Régnier P, Portier C. 1986. Initiation, attenuation and RNase III processing of transcripts from the E. coli operon encoding ribosomal protein S15 and polynucleotide phosphorylase. J Mol Biol 187: 23-32.
    • (1986) J Mol Biol , vol.187 , pp. 23-32
    • Régnier, P.1    Portier, C.2
  • 40
    • 0031009317 scopus 로고    scopus 로고
    • Polyadenylation of mRNA in prokaryotes
    • Sarkar N. 1997. Polyadenylation of mRNA in prokaryotes. Annu Rev Biochem 66:173-197.
    • (1997) Annu Rev Biochem , vol.66 , pp. 173-197
    • Sarkar, N.1
  • 41
    • 0013791293 scopus 로고
    • Purification and properties of a potassium-activated phosphodiesterase (RNase II) from Escherichia coli
    • Singer MF, Tolbert G. 1965. Purification and properties of a potassium-activated phosphodiesterase (RNase II) from Escherichia coli. Biochemistry 4:1319-1330.
    • (1965) Biochemistry , vol.4 , pp. 1319-1330
    • Singer, M.F.1    Tolbert, G.2
  • 43
    • 0028945837 scopus 로고
    • RNA degradation in Escherichia coli regulated by 3′ adenylation and 5′ phosphorylation
    • Xu F, Cohen SN. 1995. RNA degradation in Escherichia coli regulated by 3′ adenylation and 5′ phosphorylation. Nature 374:180-183.
    • (1995) Nature , vol.374 , pp. 180-183
    • Xu, F.1    Cohen, S.N.2
  • 44
    • 0027267498 scopus 로고
    • The Escherichia coli pcnB gene promotes adenylation of antisense RNA I of ColE1-type plasmids in vivo and degradation of RNA I decay intermediate
    • Xu F, Lin-Chao S, Cohen SN. 1993. The Escherichia coli pcnB gene promotes adenylation of antisense RNA I of ColE1-type plasmids in vivo and degradation of RNA I decay intermediate. Proc Natl Acad Sci USA 90:6756-6760.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 6756-6760
    • Xu, F.1    Lin-Chao, S.2    Cohen, S.N.3
  • 45
    • 0030007719 scopus 로고    scopus 로고
    • PNPase modulates RNase II expression in Escherichia coli: Implications for mRNA decay and cell metabolism
    • Zilhão R, Cairrão F, Régnier P, Arraiano CM. 1996. PNPase modulates RNase II expression in Escherichia coli: Implications for mRNA decay and cell metabolism. Mol Microbiol 20:1033-1042.
    • (1996) Mol Microbiol , vol.20 , pp. 1033-1042
    • Zilhão, R.1    Cairrão, F.2    Régnier, P.3    Arraiano, C.M.4
  • 46
    • 0027531685 scopus 로고
    • DNA sequencing and expression of the gene rnb encoding Escherichia coli ribonuclease II
    • Zilhão R, Camelo L, Arraiano CM. 1993. DNA sequencing and expression of the gene rnb encoding Escherichia coli ribonuclease II. Mol Microbiol 8:43-51.
    • (1993) Mol Microbiol , vol.8 , pp. 43-51
    • Zilhão, R.1    Camelo, L.2    Arraiano, C.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.