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Volumn 14, Issue 1, 2013, Pages

Pyrosequencing analysis of the human microbiota of healthy Chinese undergraduates

Author keywords

Core microbiome; Dominant hand; Feces; Healthy microbiota; Nasopharynx; Pyrosequencing; Saliva

Indexed keywords

RNA 16S;

EID: 84878708884     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-390     Document Type: Article
Times cited : (92)

References (69)
  • 1
    • 35348961403 scopus 로고    scopus 로고
    • An ecological and evolutionary perspective on human-microbe mutualism and disease
    • Dethlefsen L, McFall-Ngai M, Relman DA. An ecological and evolutionary perspective on human-microbe mutualism and disease. Nature 2007, 449(7164):811-818.
    • (2007) Nature , vol.449 , Issue.7164 , pp. 811-818
    • Dethlefsen, L.1    McFall-Ngai, M.2    Relman, D.A.3
  • 4
    • 33745594044 scopus 로고    scopus 로고
    • The gut flora as a forgotten organ
    • O'Hara AM, Shanahan F. The gut flora as a forgotten organ. EMBO Rep 2006, 7(7):688-693.
    • (2006) EMBO Rep , vol.7 , Issue.7 , pp. 688-693
    • O'Hara, A.M.1    Shanahan, F.2
  • 5
    • 33748039462 scopus 로고    scopus 로고
    • Symbiotic bacteria direct expression of an intestinal bactericidal lectin
    • Cash HL, Whitham CV, Behrendt CL, Hooper LV. Symbiotic bacteria direct expression of an intestinal bactericidal lectin. Science 2006, 313(5790):1126-1130.
    • (2006) Science , vol.313 , Issue.5790 , pp. 1126-1130
    • Cash, H.L.1    Whitham, C.V.2    Behrendt, C.L.3    Hooper, L.V.4
  • 6
    • 32944466887 scopus 로고    scopus 로고
    • Ecological and evolutionary forces shaping microbial diversity in the human intestine
    • Ley RE, Peterson DA, Gordon JI. Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 2006, 124(4):837-848.
    • (2006) Cell , vol.124 , Issue.4 , pp. 837-848
    • Ley, R.E.1    Peterson, D.A.2    Gordon, J.I.3
  • 7
    • 33845901507 scopus 로고    scopus 로고
    • Microbial ecology: human gut microbes associated with obesity
    • Ley RE, Turnbaugh PJ, Klein S, Gordon JI. Microbial ecology: human gut microbes associated with obesity. Nature 2006, 444(7122):1022-1023.
    • (2006) Nature , vol.444 , Issue.7122 , pp. 1022-1023
    • Ley, R.E.1    Turnbaugh, P.J.2    Klein, S.3    Gordon, J.I.4
  • 8
    • 22144490199 scopus 로고    scopus 로고
    • An immunomodulatory molecule of symbiotic bacteria directs maturation of the host immune system
    • Mazmanian SK, Liu CH, Tzianabos AO, Kasper DL. An immunomodulatory molecule of symbiotic bacteria directs maturation of the host immune system. Cell 2005, 122(1):107-118.
    • (2005) Cell , vol.122 , Issue.1 , pp. 107-118
    • Mazmanian, S.K.1    Liu, C.H.2    Tzianabos, A.O.3    Kasper, D.L.4
  • 9
    • 33845874101 scopus 로고    scopus 로고
    • An obesity-associated gut microbiome with increased capacity for energy harvest
    • Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, Gordon JI. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 2006, 444(7122):1027-1031.
    • (2006) Nature , vol.444 , Issue.7122 , pp. 1027-1031
    • Turnbaugh, P.J.1    Ley, R.E.2    Mahowald, M.A.3    Magrini, V.4    Mardis, E.R.5    Gordon, J.I.6
  • 12
    • 78651383015 scopus 로고    scopus 로고
    • Skin commensals amplify the innate immune response to pathogens by activation of distinct signaling pathways
    • Wanke I, Steffen H, Christ C, Krismer B, Gotz F, Peschel A, Schaller M, Schittek B. Skin commensals amplify the innate immune response to pathogens by activation of distinct signaling pathways. J Invest Dermatol 2011, 131(2):382-390.
    • (2011) J Invest Dermatol , vol.131 , Issue.2 , pp. 382-390
    • Wanke, I.1    Steffen, H.2    Christ, C.3    Krismer, B.4    Gotz, F.5    Peschel, A.6    Schaller, M.7    Schittek, B.8
  • 14
    • 84866167497 scopus 로고    scopus 로고
    • Reciprocal interactions of the intestinal microbiota and immune system
    • Maynard CL, Elson CO, Hatton RD, Weaver CT. Reciprocal interactions of the intestinal microbiota and immune system. Nature 2012, 489(7415):231-241.
    • (2012) Nature , vol.489 , Issue.7415 , pp. 231-241
    • Maynard, C.L.1    Elson, C.O.2    Hatton, R.D.3    Weaver, C.T.4
  • 17
    • 35348857386 scopus 로고    scopus 로고
    • Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
    • Frank DN, St Amand AL, Feldman RA, Boedeker EC, Harpaz N, Pace NR. Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc Natl Acad Sci USA 2007, 104(34):13780-13785.
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.34 , pp. 13780-13785
    • Frank, D.N.1    St Amand, A.L.2    Feldman, R.A.3    Boedeker, E.C.4    Harpaz, N.5    Pace, N.R.6
  • 19
    • 33645529707 scopus 로고    scopus 로고
    • Metagenomics: the role of the microbiome in cardiovascular diseases
    • Ordovas JM, Mooser V. Metagenomics: the role of the microbiome in cardiovascular diseases. Curr Opin Lipidol 2006, 17(2):157-161.
    • (2006) Curr Opin Lipidol , vol.17 , Issue.2 , pp. 157-161
    • Ordovas, J.M.1    Mooser, V.2
  • 21
    • 77958056493 scopus 로고    scopus 로고
    • Analysis of oral microbiota in children with dental caries by PCR-DGGE and barcoded pyrosequencing
    • Ling Z, Kong J, Jia P, Wei C, Wang Y, Pan Z, Huang W, Li L, Chen H, Xiang C. Analysis of oral microbiota in children with dental caries by PCR-DGGE and barcoded pyrosequencing. Microb Ecol 2010, 60(3):677-690.
    • (2010) Microb Ecol , vol.60 , Issue.3 , pp. 677-690
    • Ling, Z.1    Kong, J.2    Jia, P.3    Wei, C.4    Wang, Y.5    Pan, Z.6    Huang, W.7    Li, L.8    Chen, H.9    Xiang, C.10
  • 22
    • 84862997111 scopus 로고    scopus 로고
    • Human intestinal lumen and mucosa-associated microbiota in patients with colorectal cancer
    • Chen W, Liu F, Ling Z, Tong X, Xiang C. Human intestinal lumen and mucosa-associated microbiota in patients with colorectal cancer. PLoS One 2012, 7(6):e39743.
    • (2012) PLoS One , vol.7 , Issue.6
    • Chen, W.1    Liu, F.2    Ling, Z.3    Tong, X.4    Xiang, C.5
  • 24
    • 56649124715 scopus 로고    scopus 로고
    • The influence of sex, handedness, and washing on the diversity of hand surface bacteria
    • Fierer N, Hamady M, Lauber CL, Knight R. The influence of sex, handedness, and washing on the diversity of hand surface bacteria. Proc Natl Acad Sci USA 2008, 105(46):17994-17999.
    • (2008) Proc Natl Acad Sci USA , vol.105 , Issue.46 , pp. 17994-17999
    • Fierer, N.1    Hamady, M.2    Lauber, C.L.3    Knight, R.4
  • 25
    • 33847305053 scopus 로고    scopus 로고
    • Molecular analysis of human forearm superficial skin bacterial biota
    • Gao Z, Tseng CH, Pei Z, Blaser MJ. Molecular analysis of human forearm superficial skin bacterial biota. Proc Natl Acad Sci USA 2007, 104(8):2927-2932.
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.8 , pp. 2927-2932
    • Gao, Z.1    Tseng, C.H.2    Pei, Z.3    Blaser, M.J.4
  • 30
    • 72949091232 scopus 로고    scopus 로고
    • Bacterial community variation in human body habitats across space and time
    • Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R. Bacterial community variation in human body habitats across space and time. Science 2009, 326(5960):1694-1697.
    • (2009) Science , vol.326 , Issue.5960 , pp. 1694-1697
    • Costello, E.K.1    Lauber, C.L.2    Hamady, M.3    Fierer, N.4    Gordon, J.I.5    Knight, R.6
  • 31
    • 84862276328 scopus 로고    scopus 로고
    • Structure, function and diversity of the healthy human microbiome
    • The Human Microbiome Project Consortium
    • The Human Microbiome Project Consortium Structure, function and diversity of the healthy human microbiome. Nature 2012, 486(7402):207-214. The Human Microbiome Project Consortium.
    • (2012) Nature , vol.486 , Issue.7402 , pp. 207-214
  • 32
    • 84862286169 scopus 로고    scopus 로고
    • A framework for human microbiome research
    • The Human Microbiome Project Consortium
    • The Human Microbiome Project Consortium A framework for human microbiome research. Nature 2012, 486(7402):215-221. The Human Microbiome Project Consortium.
    • (2012) Nature , vol.486 , Issue.7402 , pp. 215-221
  • 33
    • 84855923925 scopus 로고    scopus 로고
    • Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers
    • Wang T, Cai G, Qiu Y, Fei N, Zhang M, Pang X, Jia W, Cai S, Zhao L. Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers. ISME J 2012, 6(2):320-329.
    • (2012) ISME J , vol.6 , Issue.2 , pp. 320-329
    • Wang, T.1    Cai, G.2    Qiu, Y.3    Fei, N.4    Zhang, M.5    Pang, X.6    Jia, W.7    Cai, S.8    Zhao, L.9
  • 35
    • 34249945020 scopus 로고    scopus 로고
    • Differences in the composition of vaginal microbial communities found in healthy Caucasian and black women
    • Zhou X, Brown CJ, Abdo Z, Davis CC, Hansmann MA, Joyce P, Foster JA, Forney LJ. Differences in the composition of vaginal microbial communities found in healthy Caucasian and black women. ISME J 2007, 1(2):121-133.
    • (2007) ISME J , vol.1 , Issue.2 , pp. 121-133
    • Zhou, X.1    Brown, C.J.2    Abdo, Z.3    Davis, C.C.4    Hansmann, M.A.5    Joyce, P.6    Foster, J.A.7    Forney, L.J.8
  • 37
    • 79960904343 scopus 로고    scopus 로고
    • Comparative analysis of Korean human gut microbiota by barcoded pyrosequencing
    • Nam YD, Jung MJ, Roh SW, Kim MS, Bae JW. Comparative analysis of Korean human gut microbiota by barcoded pyrosequencing. PLoS One 2011, 6(7):e22109.
    • (2011) PLoS One , vol.6 , Issue.7
    • Nam, Y.D.1    Jung, M.J.2    Roh, S.W.3    Kim, M.S.4    Bae, J.W.5
  • 42
    • 0036917143 scopus 로고    scopus 로고
    • Fecal microbial diversity in a strict vegetarian as determined by molecular analysis and cultivation
    • Hayashi H, Sakamoto M, Benno Y. Fecal microbial diversity in a strict vegetarian as determined by molecular analysis and cultivation. Microbiol Immunol 2002, 46(12):819-831.
    • (2002) Microbiol Immunol , vol.46 , Issue.12 , pp. 819-831
    • Hayashi, H.1    Sakamoto, M.2    Benno, Y.3
  • 43
    • 34248152283 scopus 로고    scopus 로고
    • Long-term ecological impacts of antibiotic administration on the human intestinal microbiota
    • Jernberg C, Lofmark S, Edlund C, Jansson JK. Long-term ecological impacts of antibiotic administration on the human intestinal microbiota. ISME J 2007, 1(1):56-66.
    • (2007) ISME J , vol.1 , Issue.1 , pp. 56-66
    • Jernberg, C.1    Lofmark, S.2    Edlund, C.3    Jansson, J.K.4
  • 44
    • 56849106496 scopus 로고    scopus 로고
    • The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing
    • Dethlefsen L, Huse S, Sogin ML, Relman DA. The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol 2008, 6(11):e280.
    • (2008) PLoS Biol , vol.6 , Issue.11
    • Dethlefsen, L.1    Huse, S.2    Sogin, M.L.3    Relman, D.A.4
  • 47
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • Lozupone C, Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 2005, 71(12):8228-8235.
    • (2005) Appl Environ Microbiol , vol.71 , Issue.12 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 49
    • 79955092594 scopus 로고    scopus 로고
    • Microbial communities of the upper respiratory tract and otitis media in children
    • Laufer AS, Metlay JP, Gent JF, Fennie KP, Kong Y, Pettigrew MM. Microbial communities of the upper respiratory tract and otitis media in children. MBio 2011, 2(1):e00245-10.
    • (2011) MBio , vol.2 , Issue.1
    • Laufer, A.S.1    Metlay, J.P.2    Gent, J.F.3    Fennie, K.P.4    Kong, Y.5    Pettigrew, M.M.6
  • 50
    • 77954061744 scopus 로고    scopus 로고
    • The microbiota and allergies/asthma
    • Huffnagle GB. The microbiota and allergies/asthma. PLoS Pathog 2010, 6(5):e1000549.
    • (2010) PLoS Pathog , vol.6 , Issue.5
    • Huffnagle, G.B.1
  • 52
    • 79955923331 scopus 로고    scopus 로고
    • Molecular analysis of the prevalent microbiota of human male and female forehead skin compared to forearm skin and the influence of make-up
    • Staudinger T, Pipal A, Redl B. Molecular analysis of the prevalent microbiota of human male and female forehead skin compared to forearm skin and the influence of make-up. J Appl Microbiol 2011, 110(6):1381-1389.
    • (2011) J Appl Microbiol , vol.110 , Issue.6 , pp. 1381-1389
    • Staudinger, T.1    Pipal, A.2    Redl, B.3
  • 53
    • 28944444306 scopus 로고    scopus 로고
    • Detection of potentially novel bacterial components of the human skin microbiota using culture-independent molecular profiling
    • Dekio I, Hayashi H, Sakamoto M, Kitahara M, Nishikawa T, Suematsu M, Benno Y. Detection of potentially novel bacterial components of the human skin microbiota using culture-independent molecular profiling. J Med Microbiol 2005, 54(Pt 12):1231-1238.
    • (2005) J Med Microbiol , vol.54 , Issue.PART 12 , pp. 1231-1238
    • Dekio, I.1    Hayashi, H.2    Sakamoto, M.3    Kitahara, M.4    Nishikawa, T.5    Suematsu, M.6    Benno, Y.7
  • 57
    • 40149103278 scopus 로고    scopus 로고
    • Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
    • Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R. Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods 2008, 5(3):235-237.
    • (2008) Nat Methods , vol.5 , Issue.3 , pp. 235-237
    • Hamady, M.1    Walker, J.J.2    Harris, J.K.3    Gold, N.J.4    Knight, R.5
  • 58
    • 84873522674 scopus 로고    scopus 로고
    • Pyrosequencing analysis of the salivary microbiota of healthy Chinese children and adults
    • Ling Z, Liu X, Wang Y, Li L, Xiang C. Pyrosequencing analysis of the salivary microbiota of healthy Chinese children and adults. Microb Ecol 2013, 65(2):487-495.
    • (2013) Microb Ecol , vol.65 , Issue.2 , pp. 487-495
    • Ling, Z.1    Liu, X.2    Wang, Y.3    Li, L.4    Xiang, C.5
  • 59
    • 84876129104 scopus 로고    scopus 로고
    • The restoration of the vaginal microbiota after treatment for bacterial vaginosis with metronidazole or probiotics
    • Ling Z, Liu X, Chen W, Luo Y, Yuan L, Xia Y, Nelson KE, Huang S, Zhang S, Wang Y, et al. The restoration of the vaginal microbiota after treatment for bacterial vaginosis with metronidazole or probiotics. Microb Ecol 2013, 65(3):773-780.
    • (2013) Microb Ecol , vol.65 , Issue.3 , pp. 773-780
    • Ling, Z.1    Liu, X.2    Chen, W.3    Luo, Y.4    Yuan, L.5    Xia, Y.6    Nelson, K.E.7    Huang, S.8    Zhang, S.9    Wang, Y.10
  • 64
    • 73449146256 scopus 로고    scopus 로고
    • Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing
    • Roh SW, Kim KH, Nam YD, Chang HW, Park EJ, Bae JW. Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing. ISME J 2010, 4(1):1-16.
    • (2010) ISME J , vol.4 , Issue.1 , pp. 1-16
    • Roh, S.W.1    Kim, K.H.2    Nam, Y.D.3    Chang, H.W.4    Park, E.J.5    Bae, J.W.6
  • 65
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glockner FO. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 2007, 35(21):7188-7196.
    • (2007) Nucleic Acids Res , vol.35 , Issue.21 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.5    Peplies, J.6    Glockner, F.O.7
  • 66
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of population parameters
    • Good IJ. The population frequencies of species and the estimation of population parameters. Biometrika 1953, 40:237-264.
    • (1953) Biometrika , vol.40 , pp. 237-264
    • Good, I.J.1
  • 67
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q, Garrity GM, Tiedje JM, Cole JR. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 2007, 73(16):5261-5267.
    • (2007) Appl Environ Microbiol , vol.73 , Issue.16 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 68
    • 78650549608 scopus 로고    scopus 로고
    • NBC: the Naive Bayes Classification tool webserver for taxonomic classification of metagenomic reads
    • Rosen GL, Reichenberger ER, Rosenfeld AM. NBC: the Naive Bayes Classification tool webserver for taxonomic classification of metagenomic reads. Bioinformatics 2011, 27(1):127-129.
    • (2011) Bioinformatics , vol.27 , Issue.1 , pp. 127-129
    • Rosen, G.L.1    Reichenberger, E.R.2    Rosenfeld, A.M.3
  • 69
    • 33748713890 scopus 로고    scopus 로고
    • UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context
    • Lozupone C, Hamady M, Knight R. UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinforma 2006, 7:371.
    • (2006) BMC Bioinforma , vol.7 , pp. 371
    • Lozupone, C.1    Hamady, M.2    Knight, R.3


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