NBC: The naïve Bayes classification tool webserver for taxonomic classification of metagenomic reads

Bioinformatics

Volumn 27, Issue 1, 2011, Pages 127-129

  Rosen, Gail L ^a   Reichenberger, Erin R ^b   Rosenfeld, Aaron M ^c  

^a Drexel University   (United States)

^b DREXEL UNIVERSITY   (United States)

^c Drexel University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; BAYES THEOREM; COMPUTER PROGRAM; HIGH THROUGHPUT SEQUENCING; INTERNET; METAGENOMICS; METHODOLOGY; PHYLOGENY;

ALGORITHMS; BAYES THEOREM; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; INTERNET; METAGENOMICS; PHYLOGENY; SOFTWARE;

EID: 78650549608     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq619     Document Type: Article

References (14)

1. Altschul,S.F. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
2. Gerlach,W. et al. (2009) Webcarma: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinformatics, 10.
3. Hery,M. et al. (2010) Monitoring of bacterial communities during low temperature thermal treatment of activated sludge combining dna phylochip and respirometry techniques. Water Res., [Epub ahead of print, doi: 10.1016/j.watres.2010.07.003.].
4. Huson,D.E. et al. (2007) Megan analysis of metagenomic data. Genome Res., 17, 377-386.
5. McHardy,A.C. et al. (2007) Accurate phylogenetic classification of variable-length dna fragments. Nat. Methods, 4, 63-72.
6. Meyer,F. et al. (2008)The metagenomics rast server a publicr esource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics, 9. 386.
7. Nolan,M. et al. (2010) Complete genome sequence of streptosorangium roseum type strain (ni 9100t). Stand. Genomic Sci., 2,1.
8. Overbeek,R. et al. (2005) The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucelic Acids Res., 33, 5691-5702.
9. Pond,S.K. et al. (2009) Windshield splatter analysis with the galaxy metagenomic pipeline. Genome Res., 19, 2144-2153.
10. Rosen,G.L. et al. (2009) Signal processing for metagenomics: extracting information from the soup. Curr. Genomics, 10, 493-510.
11. Rosen,G.L. et al. (2008) Metagenome fragment classification using n-mer frequency profiles. Adv. Bioinformatics, 2008, Article ID 205969.
12. Schlüter,A. et al. (2008) The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology. J. Biotechnol., 136, 77-90.
13. Seshadri,R. et al. (2007) Camera: A community resource for metagenomics. PLoS Biol., 5.
14. Vinneras,B. et al. (2006) Identification of the microbiological community in biogas systems and evaluation of microbial risks from gas usage. Sci. Total Environ., 367, 606-615.