-
2
-
-
10344227692
-
Metagenomics: application of genomics to uncultured microorganisms
-
Handelsman J. Metagenomics: application of genomics to uncultured microorganisms. Microbiol Mol Biol Rev 2004, 68:669-685.
-
(2004)
Microbiol Mol Biol Rev
, vol.68
, pp. 669-685
-
-
Handelsman, J.1
-
3
-
-
0023184331
-
Bacterial evolution
-
Woese C.R. Bacterial evolution. Microbiol Rev 1987, 51:221-271.
-
(1987)
Microbiol Rev
, vol.51
, pp. 221-271
-
-
Woese, C.R.1
-
4
-
-
0025860931
-
Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing
-
Schmidt T.M., DeLong E.F., Pace N.R. Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. J Bacteriol 1991, 173:4371-4378.
-
(1991)
J Bacteriol
, vol.173
, pp. 4371-4378
-
-
Schmidt, T.M.1
DeLong, E.F.2
Pace, N.R.3
-
5
-
-
77956727495
-
Recent progress and new challenges in metagenomics for biotechnology
-
Chistoserdova L. Recent progress and new challenges in metagenomics for biotechnology. Biotechnol Lett 2010, 32:1351-1359.
-
(2010)
Biotechnol Lett
, vol.32
, pp. 1351-1359
-
-
Chistoserdova, L.1
-
6
-
-
34250739488
-
Mining enzymes from extreme environments
-
Ferrer M., Golyshina O., Beloqui A., Golyshin P.N. Mining enzymes from extreme environments. Curr Opin Microbiol 2007, 10:207-214.
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 207-214
-
-
Ferrer, M.1
Golyshina, O.2
Beloqui, A.3
Golyshin, P.N.4
-
7
-
-
48749117805
-
Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment
-
Biddle J.F., Fitz-Gibbon S., Schuster S.C., Brenchley J.E., House C.H. Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment. Proc Natl Acad Sci U S A 2008, 105:10583-10588.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 10583-10588
-
-
Biddle, J.F.1
Fitz-Gibbon, S.2
Schuster, S.C.3
Brenchley, J.E.4
House, C.H.5
-
8
-
-
77955929948
-
The functional potential of high Arctic permafrost revealed by metagenomic sequencing, qPCR and microarray analyses
-
Yergeau E., Hogues H., Whyte L.G., Greer C.W. The functional potential of high Arctic permafrost revealed by metagenomic sequencing, qPCR and microarray analyses. Isme J 2010, 4:1206-1214.
-
(2010)
Isme J
, vol.4
, pp. 1206-1214
-
-
Yergeau, E.1
Hogues, H.2
Whyte, L.G.3
Greer, C.W.4
-
9
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter J.C., Remington K., Heidelberg J.F., Halpern A.L., Rusch D., Eisen J.A., Wu D., Paulsen I., Nelson K.E., Nelson W., et al. Environmental genome shotgun sequencing of the Sargasso Sea. Science 2004, 304:66-74.
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
Eisen, J.A.6
Wu, D.7
Paulsen, I.8
Nelson, K.E.9
Nelson, W.10
-
10
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
Tyson G.W., Chapman J., Hugenholtz P., Allen E.E., Ram R.J., Richardson P.M., Solovyev V.V., Rubin E.M., Rokhsar D.S., Banfield J.F. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 2004, 428:37-43.
-
(2004)
Nature
, vol.428
, pp. 37-43
-
-
Tyson, G.W.1
Chapman, J.2
Hugenholtz, P.3
Allen, E.E.4
Ram, R.J.5
Richardson, P.M.6
Solovyev, V.V.7
Rubin, E.M.8
Rokhsar, D.S.9
Banfield, J.F.10
-
11
-
-
84856496549
-
Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
-
Scholz M.B., Lo C.C., Chain P.S.G. Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis. Curr Opin Biotechnol 2012, 23:9-15.
-
(2012)
Curr Opin Biotechnol
, vol.23
, pp. 9-15
-
-
Scholz, M.B.1
Lo, C.C.2
Chain, P.S.G.3
-
12
-
-
81055140462
-
Potential for industrial products from the halophilic Archaea
-
Litchfield C.D. Potential for industrial products from the halophilic Archaea. J Ind Microbiol Biotechnol 2011, 38:1635-1647.
-
(2011)
J Ind Microbiol Biotechnol
, vol.38
, pp. 1635-1647
-
-
Litchfield, C.D.1
-
13
-
-
77149143533
-
Comparative community genomics in the Dead Sea: an increasingly extreme environment
-
Bodaker I., Sharon I., Suzuki M.T., Feingersch R., Shmoish M., Andreishcheva E., Sogin M.L., Rosenberg M., Maguire M.E., Belkin S., et al. Comparative community genomics in the Dead Sea: an increasingly extreme environment. Isme J 2010, 4:399-407.
-
(2010)
Isme J
, vol.4
, pp. 399-407
-
-
Bodaker, I.1
Sharon, I.2
Suzuki, M.T.3
Feingersch, R.4
Shmoish, M.5
Andreishcheva, E.6
Sogin, M.L.7
Rosenberg, M.8
Maguire, M.E.9
Belkin, S.10
-
14
-
-
74049111972
-
Metagenomic islands of hyperhalophiles: the case of Salinibacter ruber
-
Pasic L., Rodriguez-Mueller B., Martin-Cuadrado A.B., Mira A., Rohwer F., Rodriguez-Valera F. Metagenomic islands of hyperhalophiles: the case of Salinibacter ruber. BMC Genomics 2009, 10:570.
-
(2009)
BMC Genomics
, vol.10
, pp. 570
-
-
Pasic, L.1
Rodriguez-Mueller, B.2
Martin-Cuadrado, A.B.3
Mira, A.4
Rohwer, F.5
Rodriguez-Valera, F.6
-
15
-
-
84355162254
-
De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities
-
Narasingarao P., Podell S., Ugalde J.A., Brochier-Armanet C., Emerson J.B., Brocks J.J., Heidelberg K.B., Banfield J.F., Allen E.E. De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities. Isme J 2012, 6:81-93.
-
(2012)
Isme J
, vol.6
, pp. 81-93
-
-
Narasingarao, P.1
Podell, S.2
Ugalde, J.A.3
Brochier-Armanet, C.4
Emerson, J.B.5
Brocks, J.J.6
Heidelberg, K.B.7
Banfield, J.F.8
Allen, E.E.9
-
16
-
-
84855263243
-
Unveiling microbial life in the new deep-sea hypersaline Lake Thetis. Part II: A metagenomic study
-
Ferrer M., Werner J., Chernikova T.N., Bargiela R., Fernandez L., La Cono V., Waldmann J., Teeling H., Golyshina O.V., Glockner F.O., et al. Unveiling microbial life in the new deep-sea hypersaline Lake Thetis. Part II: A metagenomic study. Environ Microbiol 2012, 14:268-281.
-
(2012)
Environ Microbiol
, vol.14
, pp. 268-281
-
-
Ferrer, M.1
Werner, J.2
Chernikova, T.N.3
Bargiela, R.4
Fernandez, L.5
La Cono, V.6
Waldmann, J.7
Teeling, H.8
Golyshina, O.V.9
Glockner, F.O.10
-
17
-
-
44649171625
-
Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat
-
Kunin V., Raes J., Harris J.K., Spear J.R., Walker J.J., Ivanova N., von Mering C., Bebout B.M., Pace N.R., Bork P., et al. Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat. Mol Syst Biol 2008, 4:198.
-
(2008)
Mol Syst Biol
, vol.4
, pp. 198
-
-
Kunin, V.1
Raes, J.2
Harris, J.K.3
Spear, J.R.4
Walker, J.J.5
Ivanova, N.6
von Mering, C.7
Bebout, B.M.8
Pace, N.R.9
Bork, P.10
-
18
-
-
77951499585
-
Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community
-
Hemme C.L., Deng Y., Gentry T.J., Fields M.W., Wu L., Barua S., Barry K., Tringe S.G., Watson D.B., He Z., et al. Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community. Isme J 2010, 4:660-672.
-
(2010)
Isme J
, vol.4
, pp. 660-672
-
-
Hemme, C.L.1
Deng, Y.2
Gentry, T.J.3
Fields, M.W.4
Wu, L.5
Barua, S.6
Barry, K.7
Tringe, S.G.8
Watson, D.B.9
He, Z.10
-
19
-
-
84355162257
-
Community genomic analysis of an extremely acidophilic sulfur-oxidizing biofilm
-
Jones D.S., Albrecht H.L., Dawson K.S., Schaperdoth I., Freeman K.H., Pi Y., Pearson A., Macalady J.L. Community genomic analysis of an extremely acidophilic sulfur-oxidizing biofilm. Isme J 2012, 6:158-170.
-
(2012)
Isme J
, vol.6
, pp. 158-170
-
-
Jones, D.S.1
Albrecht, H.L.2
Dawson, K.S.3
Schaperdoth, I.4
Freeman, K.H.5
Pi, Y.6
Pearson, A.7
Macalady, J.L.8
-
20
-
-
77952691194
-
Enigmatic, ultrasmall, uncultivated Archaea
-
Baker B.J., Comolli L.R., Dick G.J., Hauser L.J., Hyatt D., Dill B.D., Land M.L., Verberkmoes N.C., Hettich R.L., Banfield J.F. Enigmatic, ultrasmall, uncultivated Archaea. Proc Natl Acad Sci U S A 2010, 107:8806-8811.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 8806-8811
-
-
Baker, B.J.1
Comolli, L.R.2
Dick, G.J.3
Hauser, L.J.4
Hyatt, D.5
Dill, B.D.6
Land, M.L.7
Verberkmoes, N.C.8
Hettich, R.L.9
Banfield, J.F.10
-
21
-
-
21344465408
-
Community proteomics of a natural microbial biofilm
-
Ram R.J., Verberkmoes N.C., Thelen M.P., Tyson G.W., Baker B.J., Blake R.C., Shah M., Hettich R.L., Banfield J.F. Community proteomics of a natural microbial biofilm. Science 2005, 308:1915-1920.
-
(2005)
Science
, vol.308
, pp. 1915-1920
-
-
Ram, R.J.1
Verberkmoes, N.C.2
Thelen, M.P.3
Tyson, G.W.4
Baker, B.J.5
Blake, R.C.6
Shah, M.7
Hettich, R.L.8
Banfield, J.F.9
-
23
-
-
79960564246
-
Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat
-
Liu Z., Klatt C.G., Wood J.M., Rusch D.B., Ludwig M., Wittekindt N., Tomsho L.P., Schuster S.C., Ward D.M., Bryant D.A. Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat. Isme J 2011, 5:1279-1290.
-
(2011)
Isme J
, vol.5
, pp. 1279-1290
-
-
Liu, Z.1
Klatt, C.G.2
Wood, J.M.3
Rusch, D.B.4
Ludwig, M.5
Wittekindt, N.6
Tomsho, L.P.7
Schuster, S.C.8
Ward, D.M.9
Bryant, D.A.10
-
24
-
-
78149423315
-
Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function
-
Inskeep W.P., Rusch D.B., Jay Z.J., Herrgard M.J., Kozubal M.A., Richardson T.H., Macur R.E., Hamamura N., Jennings R., Fouke B.W., et al. Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function. PLoS One 2010, 5:e9773.
-
(2010)
PLoS One
, vol.5
-
-
Inskeep, W.P.1
Rusch, D.B.2
Jay, Z.J.3
Herrgard, M.J.4
Kozubal, M.A.5
Richardson, T.H.6
Macur, R.E.7
Hamamura, N.8
Jennings, R.9
Fouke, B.W.10
-
25
-
-
84859826344
-
High coverage sequencing of DNA from microorganisms living in an oil reservoir 2.5kilometres subsurface
-
Kotlar H.K., Lewin A., Johansen J., Throne-Holst M., Haverkamp T., Markussen S., Winnberg A., Ringrose P., Aakvik T., Ryeng E., et al. High coverage sequencing of DNA from microorganisms living in an oil reservoir 2.5kilometres subsurface. Environ Microbiol Rep 2011, 3:674-681.
-
(2011)
Environ Microbiol Rep
, vol.3
, pp. 674-681
-
-
Kotlar, H.K.1
Lewin, A.2
Johansen, J.3
Throne-Holst, M.4
Haverkamp, T.5
Markussen, S.6
Winnberg, A.7
Ringrose, P.8
Aakvik, T.9
Ryeng, E.10
-
26
-
-
80053608321
-
Complete genome sequence of a nonculturable Methanococcus maripaludis strain extracted in a metagenomic survey of petroleum reservoir fluids
-
Wang X., Greenfield P., Li D., Hendry P., Volk H., Sutherland T.D. Complete genome sequence of a nonculturable Methanococcus maripaludis strain extracted in a metagenomic survey of petroleum reservoir fluids. J Bacteriol 2011, 193:5595.
-
(2011)
J Bacteriol
, vol.193
, pp. 5595
-
-
Wang, X.1
Greenfield, P.2
Li, D.3
Hendry, P.4
Volk, H.5
Sutherland, T.D.6
-
27
-
-
0025330639
-
Heat-shock proteins
-
Schlesinger M.J. Heat-shock proteins. JBC 1990, 265:12111-12114.
-
(1990)
JBC
, vol.265
, pp. 12111-12114
-
-
Schlesinger, M.J.1
-
28
-
-
80051666628
-
Metagenomic analysis of 0.2-μm-passable microorganisms in deep-sea hydrothermal fluid
-
Nakai R., Abe T., Takeyama H., Naganuma T. Metagenomic analysis of 0.2-μm-passable microorganisms in deep-sea hydrothermal fluid. Mar Biotechnol (NY) 2011, 13:900-908.
-
(2011)
Mar Biotechnol (NY)
, vol.13
, pp. 900-908
-
-
Nakai, R.1
Abe, T.2
Takeyama, H.3
Naganuma, T.4
-
29
-
-
79955598535
-
Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group
-
Nunoura T., Takaki Y., Kakuta J., Nishi S., Sugahara J., Kazama H., Chee G.J., Hattori M., Kanai A., Atomi H., et al. Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group. Nucleic Acids Res 2011, 39:3204-3223.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 3204-3223
-
-
Nunoura, T.1
Takaki, Y.2
Kakuta, J.3
Nishi, S.4
Sugahara, J.5
Kazama, H.6
Chee, G.J.7
Hattori, M.8
Kanai, A.9
Atomi, H.10
-
30
-
-
53749096964
-
Environmental genomics reveals a single-species ecosystem deep within Earth
-
Chivian D., Brodie E.L., Alm E.J., Culley D.E., Dehal P.S., DeSantis T.Z., Gihring T.M., Lapidus A., Lin L.H., Lowry S.R., et al. Environmental genomics reveals a single-species ecosystem deep within Earth. Science 2008, 322:275-278.
-
(2008)
Science
, vol.322
, pp. 275-278
-
-
Chivian, D.1
Brodie, E.L.2
Alm, E.J.3
Culley, D.E.4
Dehal, P.S.5
DeSantis, T.Z.6
Gihring, T.M.7
Lapidus, A.8
Lin, L.H.9
Lowry, S.R.10
-
31
-
-
84856402440
-
A deeply branching thermophilic bacterium with an ancient acetyl-CoA pathway dominates a subsurface ecosystem
-
Takami H., Noguchi H., Takaki Y., Uchiyama I., Toyoda A., Nishi S., Chee G.J., Arai W., Nunoura T., Itoh T., et al. A deeply branching thermophilic bacterium with an ancient acetyl-CoA pathway dominates a subsurface ecosystem. PLoS One 2012, 7:e30559.
-
(2012)
PLoS One
, vol.7
-
-
Takami, H.1
Noguchi, H.2
Takaki, Y.3
Uchiyama, I.4
Toyoda, A.5
Nishi, S.6
Chee, G.J.7
Arai, W.8
Nunoura, T.9
Itoh, T.10
-
32
-
-
0032144071
-
Histones and nucleosomes in Archaea and Eukarya: a comparative analysis
-
Pereira S.L., Reeve J.N. Histones and nucleosomes in Archaea and Eukarya: a comparative analysis. Extremophiles 1998, 2:141-148.
-
(1998)
Extremophiles
, vol.2
, pp. 141-148
-
-
Pereira, S.L.1
Reeve, J.N.2
-
33
-
-
0034021526
-
Biomolecular stability and life at high temperatures
-
Daniel R.M., Cowan D.A. Biomolecular stability and life at high temperatures. Cell Mol Life Sci 2000, 57:250-264.
-
(2000)
Cell Mol Life Sci
, vol.57
, pp. 250-264
-
-
Daniel, R.M.1
Cowan, D.A.2
-
34
-
-
3142753959
-
Reverse gyrase has heat-protective DNA chaperone activity independent of supercoiling
-
Kampmann M., Stock D. Reverse gyrase has heat-protective DNA chaperone activity independent of supercoiling. Nucleic Acids Res 2004, 32:3537-3545.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 3537-3545
-
-
Kampmann, M.1
Stock, D.2
-
35
-
-
33646832425
-
Reverse gyrase functions as a DNA renaturase-annealing of complementary single-stranded circles and positive supercoiling of a bubble substrate
-
Hsieh T.S., Plank J.L. Reverse gyrase functions as a DNA renaturase-annealing of complementary single-stranded circles and positive supercoiling of a bubble substrate. JBC 2006, 281:5640-5647.
-
(2006)
JBC
, vol.281
, pp. 5640-5647
-
-
Hsieh, T.S.1
Plank, J.L.2
-
36
-
-
79961082576
-
Analysis of insertion sequences in thermophilic cyanobacteria: exploring the mechanisms of establishing, maintaining, and withstanding high insertion sequence abundance
-
Nelson W.C., Wollerman L., Bhaya D., Heidelberg J.F. Analysis of insertion sequences in thermophilic cyanobacteria: exploring the mechanisms of establishing, maintaining, and withstanding high insertion sequence abundance. Appl Environ Microbiol 2011, 77:5458-5466.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 5458-5466
-
-
Nelson, W.C.1
Wollerman, L.2
Bhaya, D.3
Heidelberg, J.F.4
-
37
-
-
72649088719
-
Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm
-
Brazelton W.J., Baross J.A. Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm. Isme J 2009, 3:1420-1424.
-
(2009)
Isme J
, vol.3
, pp. 1420-1424
-
-
Brazelton, W.J.1
Baross, J.A.2
-
38
-
-
79951810387
-
Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries
-
Xie W., Wang F.P., Guo L., Chen Z.L., Sievert S.M., Meng J., Huang G.R., Li Y.X., Yan Q.Y., Wu S., et al. Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries. Isme J 2011, 5:414-426.
-
(2011)
Isme J
, vol.5
, pp. 414-426
-
-
Xie, W.1
Wang, F.P.2
Guo, L.3
Chen, Z.L.4
Sievert, S.M.5
Meng, J.6
Huang, G.R.7
Li, Y.X.8
Yan, Q.Y.9
Wu, S.10
-
39
-
-
79960560749
-
Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential
-
Klatt C.G., Wood J.M., Rusch D.B., Bateson M.M., Hamamura N., Heidelberg J.F., Grossman A.R., Bhaya D., Cohan F.M., Kuhl M., et al. Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential. Isme J 2011, 5:1262-1278.
-
(2011)
Isme J
, vol.5
, pp. 1262-1278
-
-
Klatt, C.G.1
Wood, J.M.2
Rusch, D.B.3
Bateson, M.M.4
Hamamura, N.5
Heidelberg, J.F.6
Grossman, A.R.7
Bhaya, D.8
Cohan, F.M.9
Kuhl, M.10
-
40
-
-
84861880473
-
Coordinating environmental genomics and geochemistry reveals metabolic transitions in a hot spring ecosystem
-
Swingley W.D., Meyer-Dombard D.R., Shock E.L., Alsop E.B., Falenski H.D., Havig J.R., Raymond J. Coordinating environmental genomics and geochemistry reveals metabolic transitions in a hot spring ecosystem. PLoS One 2012, 7:e38108.
-
(2012)
PLoS One
, vol.7
-
-
Swingley, W.D.1
Meyer-Dombard, D.R.2
Shock, E.L.3
Alsop, E.B.4
Falenski, H.D.5
Havig, J.R.6
Raymond, J.7
-
42
-
-
0002188092
-
Microbial life at low temperatures: ecological aspects
-
Academic Press, D.J. Kushner (Ed.)
-
Baross J.A., Morita R.Y. Microbial life at low temperatures: ecological aspects. Microbial Life in Extreme Environments 1978, 9-71. Academic Press. D.J. Kushner (Ed.).
-
(1978)
Microbial Life in Extreme Environments
, pp. 9-71
-
-
Baross, J.A.1
Morita, R.Y.2
-
43
-
-
1242299736
-
Isolation of nucleic acids and cultures from fossil ice and permafrost
-
Willerslev E., Hansen A.J., Poinar H.N. Isolation of nucleic acids and cultures from fossil ice and permafrost. Trends Ecol Evol 2004, 19:141-147.
-
(2004)
Trends Ecol Evol
, vol.19
, pp. 141-147
-
-
Willerslev, E.1
Hansen, A.J.2
Poinar, H.N.3
-
44
-
-
0346500434
-
Phylogenetic and physiological diversity of microorganisms isolated from a deep greenland glacier ice core
-
Miteva V.I., Sheridan P.P., Brenchley J.E. Phylogenetic and physiological diversity of microorganisms isolated from a deep greenland glacier ice core. Appl Environ Microbiol 2004, 70:202-213.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 202-213
-
-
Miteva, V.I.1
Sheridan, P.P.2
Brenchley, J.E.3
-
45
-
-
85036391461
-
Cold-environment metagenomics for discovering novel microorganisms and enzymes
-
Kasana R.C. Cold-environment metagenomics for discovering novel microorganisms and enzymes. Afr J Microbiol Res 2011, 5:4449-4454.
-
(2011)
Afr J Microbiol Res
, vol.5
, pp. 4449-4454
-
-
Kasana, R.C.1
-
46
-
-
84855733160
-
Metagenomic analysis of stress genes in microbial mat communities from Antarctica and the high Arctic
-
Varin T., Lovejoy C., Jungblut A.D., Warwick F.V., Corbeil J. Metagenomic analysis of stress genes in microbial mat communities from Antarctica and the high Arctic. Appl Environ Microbiol 2011, 78:549-559.
-
(2011)
Appl Environ Microbiol
, vol.78
, pp. 549-559
-
-
Varin, T.1
Lovejoy, C.2
Jungblut, A.D.3
Warwick, F.V.4
Corbeil, J.5
-
47
-
-
72949116371
-
Phylogenetic diversity and metabolic potential revealed in a glacier ice metagenome
-
Simon C., Wiezer A., Strittmatter A.W., Daniel R. Phylogenetic diversity and metabolic potential revealed in a glacier ice metagenome. Appl Environ Microbiol 2009, 75:7519-7526.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7519-7526
-
-
Simon, C.1
Wiezer, A.2
Strittmatter, A.W.3
Daniel, R.4
-
48
-
-
77958065732
-
Metagenomic profiling of Arctic microbial mat communities as nutrient scavenging and recycling systems
-
Varin T., Lovejoy C., Jungblut A.D., Vincent W.F., Corbeil J. Metagenomic profiling of Arctic microbial mat communities as nutrient scavenging and recycling systems. Limnol Oceanogr 2010, 55:1901-1911.
-
(2010)
Limnol Oceanogr
, vol.55
, pp. 1901-1911
-
-
Varin, T.1
Lovejoy, C.2
Jungblut, A.D.3
Vincent, W.F.4
Corbeil, J.5
-
49
-
-
77954832678
-
Metaproteogenomic analysis of a dominant green sulfur bacterium from Ace Lake, Antarctica
-
Ng C., DeMaere M.Z., Williams T.J., Lauro F.M., Raftery M., Gibson J.A.E., Andrews-Pfannkoch C., Lewis M., Hoffman J.M., Thomas T., et al. Metaproteogenomic analysis of a dominant green sulfur bacterium from Ace Lake, Antarctica. Isme J 2010, 4:1002-1019.
-
(2010)
Isme J
, vol.4
, pp. 1002-1019
-
-
Ng, C.1
DeMaere, M.Z.2
Williams, T.J.3
Lauro, F.M.4
Raftery, M.5
Gibson, J.A.E.6
Andrews-Pfannkoch, C.7
Lewis, M.8
Hoffman, J.M.9
Thomas, T.10
-
50
-
-
79955071958
-
An integrative study of a meromictic lake ecosystem in Antarctica
-
Lauro F.M., DeMaere M.Z., Yau S., Brown M.V., Ng C., Wilkins D., Raftery M.J., Gibson J.A.E., Andrews-Pfannkoch C., Lewis M., et al. An integrative study of a meromictic lake ecosystem in Antarctica. Isme J 2011, 5:879-895.
-
(2011)
Isme J
, vol.5
, pp. 879-895
-
-
Lauro, F.M.1
DeMaere, M.Z.2
Yau, S.3
Brown, M.V.4
Ng, C.5
Wilkins, D.6
Raftery, M.J.7
Gibson, J.A.E.8
Andrews-Pfannkoch, C.9
Lewis, M.10
-
51
-
-
83555174830
-
Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw
-
Mackelprang R., Waldrop M.P., DeAngelis K.M., David M.M., Chavarria K.L., Blazewicz S.J., Rubin E.M., Jansson J.K. Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw. Nature 2011, 480:368-371.
-
(2011)
Nature
, vol.480
, pp. 368-371
-
-
Mackelprang, R.1
Waldrop, M.P.2
DeAngelis, K.M.3
David, M.M.4
Chavarria, K.L.5
Blazewicz, S.J.6
Rubin, E.M.7
Jansson, J.K.8
-
52
-
-
0002364934
-
The chemical stratification and microbial communities of Ace Lake, Antarctica: a review of the characteristics of a marine-derived meromictic lake
-
Rankin L.M., Gobson J.A.E., Franzmann P.D., Burton H.R. The chemical stratification and microbial communities of Ace Lake, Antarctica: a review of the characteristics of a marine-derived meromictic lake. Polarforschung 1999, 66:33-52.
-
(1999)
Polarforschung
, vol.66
, pp. 33-52
-
-
Rankin, L.M.1
Gobson, J.A.E.2
Franzmann, P.D.3
Burton, H.R.4
-
53
-
-
84861909708
-
Thermostable DNA polymerase from a viral metagenome is a potent RT-PCR enzyme
-
Moser M.J., DiFrancesco R.A., Gowda K., Klingele A.J., Sugar D.R., Stocki S., Mead D.A., Schoenfeld T.W. Thermostable DNA polymerase from a viral metagenome is a potent RT-PCR enzyme. PLoS One 2012, 7:e38371.
-
(2012)
PLoS One
, vol.7
-
-
Moser, M.J.1
DiFrancesco, R.A.2
Gowda, K.3
Klingele, A.J.4
Sugar, D.R.5
Stocki, S.6
Mead, D.A.7
Schoenfeld, T.W.8
-
54
-
-
84871797612
-
Characterization of a glycoside hydrolase family 1 beta-galactosidase from hot spring metagenome with transglycosylation activity
-
[epub ahead of print]
-
Gupta R., Govil T., Capalash N., Sharma P. Characterization of a glycoside hydrolase family 1 beta-galactosidase from hot spring metagenome with transglycosylation activity. Appl Biochem Biotechnol 2012, [epub ahead of print].
-
(2012)
Appl Biochem Biotechnol
-
-
Gupta, R.1
Govil, T.2
Capalash, N.3
Sharma, P.4
-
55
-
-
80052436397
-
Identification and characterization of a novel thermostable gh-57 gene from metagenomic fosmid library of the Juan de Fuca Ridge hydrothermal vent
-
Wang H., Gong Y., Xie W., Xiao W., Wang J., Zheng Y., Hu J., Liu Z. Identification and characterization of a novel thermostable gh-57 gene from metagenomic fosmid library of the Juan de Fuca Ridge hydrothermal vent. Appl Biochem Biotechnol 2011, 164:1323-1338.
-
(2011)
Appl Biochem Biotechnol
, vol.164
, pp. 1323-1338
-
-
Wang, H.1
Gong, Y.2
Xie, W.3
Xiao, W.4
Wang, J.5
Zheng, Y.6
Hu, J.7
Liu, Z.8
-
56
-
-
84860432420
-
Antarctic DNA moving forward: genomic plasticity and biotechnological potential
-
Martinez-Rosales C., Fullana N., Musto H., Castro-Sowinski S. Antarctic DNA moving forward: genomic plasticity and biotechnological potential. FEMS Microbiol Lett 2012, 331:1-9.
-
(2012)
FEMS Microbiol Lett
, vol.331
, pp. 1-9
-
-
Martinez-Rosales, C.1
Fullana, N.2
Musto, H.3
Castro-Sowinski, S.4
-
57
-
-
79954659143
-
Isolation and characterization of cold-active family VIII esterases from an arctic soil metagenome
-
Yu E.Y., Kwon M.A., Lee M., Oh J.Y., Choi J.E., Lee J.Y., Song B.K., Hahm D.H., Song J.K. Isolation and characterization of cold-active family VIII esterases from an arctic soil metagenome. Appl Microbiol Biotechnol 2011, 90:573-581.
-
(2011)
Appl Microbiol Biotechnol
, vol.90
, pp. 573-581
-
-
Yu, E.Y.1
Kwon, M.A.2
Lee, M.3
Oh, J.Y.4
Choi, J.E.5
Lee, J.Y.6
Song, B.K.7
Hahm, D.H.8
Song, J.K.9
-
58
-
-
79959661175
-
Power P: exploring the Antarctic soil metagenome as a source of novel cold-adapted enzymes and genetic mobile elements
-
Berlemont R., Pipers D., Delsaute M., Angiono F., Feller G., Galleni M. Power P: exploring the Antarctic soil metagenome as a source of novel cold-adapted enzymes and genetic mobile elements. Rev Argent Microbiol 2011, 43:94-103.
-
(2011)
Rev Argent Microbiol
, vol.43
, pp. 94-103
-
-
Berlemont, R.1
Pipers, D.2
Delsaute, M.3
Angiono, F.4
Feller, G.5
Galleni, M.6
-
59
-
-
63449109953
-
Characterization and its potential application of two esterases derived from the arctic sediment metagenome
-
Jeon J.H., Kim J.T., Kang S.G., Lee J.H., Kim S.J. Characterization and its potential application of two esterases derived from the arctic sediment metagenome. Mar Biotechnol (NY) 2009, 11:307-316.
-
(2009)
Mar Biotechnol (NY)
, vol.11
, pp. 307-316
-
-
Jeon, J.H.1
Kim, J.T.2
Kang, S.G.3
Lee, J.H.4
Kim, S.J.5
-
60
-
-
71349088748
-
Achievements and new knowledge unraveled by metagenomic approaches
-
Simon C., Daniel R. Achievements and new knowledge unraveled by metagenomic approaches. Appl Microbiol Biotechnol 2009, 85:265-276.
-
(2009)
Appl Microbiol Biotechnol
, vol.85
, pp. 265-276
-
-
Simon, C.1
Daniel, R.2
-
61
-
-
20244376755
-
Comparative metagenomics of microbial communities
-
Tringe S.G., von Mering C., Kobayashi A., Salamov A.A., Chen K., Chang H.W., Podar M., Short J.M., Mathur E.J., Detter J.C., et al. Comparative metagenomics of microbial communities. Science 2005, 308:554-557.
-
(2005)
Science
, vol.308
, pp. 554-557
-
-
Tringe, S.G.1
von Mering, C.2
Kobayashi, A.3
Salamov, A.A.4
Chen, K.5
Chang, H.W.6
Podar, M.7
Short, J.M.8
Mathur, E.J.9
Detter, J.C.10
-
62
-
-
84864258618
-
A whole-cell computational model predicts phenotype from genotype
-
Karr J.R., Sanghvi J.C., Macklin D.N., Gutschow M.V., Jacobs J.M., Bolival B., Assad-Garcia N., Glass J.I., Covert M.W. A whole-cell computational model predicts phenotype from genotype. Cell 2012, 150:389-401.
-
(2012)
Cell
, vol.150
, pp. 389-401
-
-
Karr, J.R.1
Sanghvi, J.C.2
Macklin, D.N.3
Gutschow, M.V.4
Jacobs, J.M.5
Bolival, B.6
Assad-Garcia, N.7
Glass, J.I.8
Covert, M.W.9
-
63
-
-
28644447444
-
Genetic and functional properties of uncultivated thermophilic crenarchaeotes from a subsurface gold mine as revealed by analysis of genome fragments
-
Nunoura T., Hirayama H., Takami H., Oida H., Nishi S., Shimamura S., Suzuki Y., Inagaki F., Takai K., Nealson K.H., et al. Genetic and functional properties of uncultivated thermophilic crenarchaeotes from a subsurface gold mine as revealed by analysis of genome fragments. Environ Microbiol 2005, 7:1967-1984.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1967-1984
-
-
Nunoura, T.1
Hirayama, H.2
Takami, H.3
Oida, H.4
Nishi, S.5
Shimamura, S.6
Suzuki, Y.7
Inagaki, F.8
Takai, K.9
Nealson, K.H.10
-
64
-
-
80051643186
-
Shock EL, Calculation of the relative chemical stabilities of proteins as a function of temperature and redox chemistry in a hot spring
-
e22782
-
Dick J.M., Shock EL Calculation of the relative chemical stabilities of proteins as a function of temperature and redox chemistry in a hot spring. PLoS ONE 2011, 6. e22782.
-
(2011)
PLoS ONE
, vol.6
-
-
Dick, J.M.1
-
65
-
-
36849028589
-
Heidelberg JF, Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses
-
Bhaya D., Grossman A.R., Steunou A.S., Khuri N., Cohan F.M., Hamamura N., Melendrez M.C., Bateson M.M., Ward D.M., Heidelberg JF Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses. ISME J 2007, 1:703-713.
-
(2007)
ISME J
, vol.1
, pp. 703-713
-
-
Bhaya, D.1
Grossman, A.R.2
Steunou, A.S.3
Khuri, N.4
Cohan, F.M.5
Hamamura, N.6
Melendrez, M.C.7
Bateson, M.M.8
Ward, D.M.9
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