메뉴 건너뛰기




Volumn 10, Issue , 2009, Pages

Metagenomic islands of hyperhalophiles: The case of Salinibacter ruber

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; POLYSACCHARIDE; BACTERIAL DNA;

EID: 74049111972     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-10-570     Document Type: Article
Times cited : (47)

References (44)
  • 4
    • 38849200974 scopus 로고    scopus 로고
    • Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data
    • 10.1186/1745-6150-2-27, 2217521, 17988398
    • Wilhelm LJ, Tripp HJ, Givan SA, Smith DP, Giovannoni SJ. Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data. Biol Direct 2007, 2:27. 10.1186/1745-6150-2-27, 2217521, 17988398.
    • (2007) Biol Direct , vol.2 , pp. 27
    • Wilhelm, L.J.1    Tripp, H.J.2    Givan, S.A.3    Smith, D.P.4    Giovannoni, S.J.5
  • 5
    • 33751202973 scopus 로고    scopus 로고
    • Towards a conceptual and operational union of bacterial systematics, ecology, and evolution
    • 10.1098/rstb.2006.1918, 1764936, 17062416
    • Cohan F. Towards a conceptual and operational union of bacterial systematics, ecology, and evolution. Philos Trans R Soc Lond B Biol Sci 2006, 361:1985-1996. 10.1098/rstb.2006.1918, 1764936, 17062416.
    • (2006) Philos Trans R Soc Lond B Biol Sci , vol.361 , pp. 1985-1996
    • Cohan, F.1
  • 6
    • 38149124678 scopus 로고    scopus 로고
    • Microbial diversity--insights from population genetics
    • Mes TH. Microbial diversity--insights from population genetics. Environ Microbiol 2008, 10:251-264.
    • (2008) Environ Microbiol , vol.10 , pp. 251-264
    • Mes, T.H.1
  • 7
    • 0032574728 scopus 로고    scopus 로고
    • Evolution of rhizobia by acquisition of a 500-kb symbiosis island that integrates into a phe-tRNA gene
    • 10.1073/pnas.95.9.5145, 20228, 9560243
    • Sullivan JT, Ronson CW. Evolution of rhizobia by acquisition of a 500-kb symbiosis island that integrates into a phe-tRNA gene. Proc Natl Acad Sci USA 1998, 95:5145-5149. 10.1073/pnas.95.9.5145, 20228, 9560243.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 5145-5149
    • Sullivan, J.T.1    Ronson, C.W.2
  • 8
    • 0029817221 scopus 로고    scopus 로고
    • Identification of a pathogenicity island required for Salmonella survival in host cells
    • 10.1073/pnas.93.15.7800, 38828, 8755556
    • Ochman H, Soncini FC, Solomon F, Groisman EA. Identification of a pathogenicity island required for Salmonella survival in host cells. Proc Natl Acad Sci USA 1996, 93:7800-7804. 10.1073/pnas.93.15.7800, 38828, 8755556.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 7800-7804
    • Ochman, H.1    Soncini, F.C.2    Solomon, F.3    Groisman, E.A.4
  • 9
    • 2442449227 scopus 로고    scopus 로고
    • Genomic islands in pathogenic and environmental microorganisms
    • 10.1038/nrmicro884, 15100694
    • Dobrindt U, Hochhut B, Hentschel U, Hacker J. Genomic islands in pathogenic and environmental microorganisms. Nat Rev Microbiol 2004, 2:414-424. 10.1038/nrmicro884, 15100694.
    • (2004) Nat Rev Microbiol , vol.2 , pp. 414-424
    • Dobrindt, U.1    Hochhut, B.2    Hentschel, U.3    Hacker, J.4
  • 10
    • 55449094978 scopus 로고    scopus 로고
    • Evidence of a large novel gene pool associated with prokaryotic genomic islands
    • 10.1371/journal.pgen.0010062, 1285063,1285063, 16299586
    • Hsiao WW, Ung K, Aeschliman D, Bryan J, Finlay BB, Brinkman FS. Evidence of a large novel gene pool associated with prokaryotic genomic islands. PLoS Genet 2005, 1:e62. 10.1371/journal.pgen.0010062, 1285063,1285063, 16299586.
    • (2005) PLoS Genet , vol.1
    • Hsiao, W.W.1    Ung, K.2    Aeschliman, D.3    Bryan, J.4    Finlay, B.B.5    Brinkman, F.S.6
  • 11
    • 33748299286 scopus 로고    scopus 로고
    • Environmental genomics of 'Haloquadratum walsbyi' in a saltern crystallizer indicates a large pool of accessory genes in an otherwise coherent species
    • 10.1186/1471-2164-7-171, 1560387, 16820057
    • Legault BA, Lopez-Lopez A, Alba-Casado JC, Doolittle WF, Bolhuis H, Rodriguez-Valera F, Papke RT. Environmental genomics of 'Haloquadratum walsbyi' in a saltern crystallizer indicates a large pool of accessory genes in an otherwise coherent species. BMC Genomics 2006, 7:171. 10.1186/1471-2164-7-171, 1560387, 16820057.
    • (2006) BMC Genomics , vol.7 , pp. 171
    • Legault, B.A.1    Lopez-Lopez, A.2    Alba-Casado, J.C.3    Doolittle, W.F.4    Bolhuis, H.5    Rodriguez-Valera, F.6    Papke, R.T.7
  • 15
    • 57349122987 scopus 로고    scopus 로고
    • Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter
    • 10.1038/ismej.2008.74, 18670397
    • Ivars-Martinez E, Martin-Cuadrado AB, D'Auria G, Mira A, Ferriera S, Johnson J, Friedman R, Rodriguez-Valera F. Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter. ISME J 2008, 2:1194-1212. 10.1038/ismej.2008.74, 18670397.
    • (2008) ISME J , vol.2 , pp. 1194-1212
    • Ivars-Martinez, E.1    Martin-Cuadrado, A.B.2    D'Auria, G.3    Mira, A.4    Ferriera, S.5    Johnson, J.6    Friedman, R.7    Rodriguez-Valera, F.8
  • 18
    • 57349154223 scopus 로고    scopus 로고
    • Distribution, abundance and diversity of the extremely halophilic bacterium Salinibacter ruber
    • 10.1186/1746-1448-4-15, 2596770, 18957079
    • Antón J, Peña A, Santos F, Martínez-García M, Schmitt-Kopplin P, Rosselló-Mora R. Distribution, abundance and diversity of the extremely halophilic bacterium Salinibacter ruber. Saline Systems 2008, 4:15. 10.1186/1746-1448-4-15, 2596770, 18957079.
    • (2008) Saline Systems , vol.4 , pp. 15
    • Antón, J.1    Peña, A.2    Santos, F.3    Martínez-García, M.4    Schmitt-Kopplin, P.5    Rosselló-Mora, R.6
  • 19
    • 0000518282 scopus 로고    scopus 로고
    • The archaea and the deeply branching and the phototrophic bacteria
    • Springer-Verlag, Castenholtz JB, Garrity G, 2
    • Boone DR, Castenholz RW. The archaea and the deeply branching and the phototrophic bacteria. Bergey's Manual of Systematic Bacteriology 2001, 1:213-135. Springer-Verlag, Castenholtz JB, Garrity G, 2.
    • (2001) Bergey's Manual of Systematic Bacteriology , vol.1 , pp. 213-1135
    • Boone, D.R.1    Castenholz, R.W.2
  • 20
    • 10044226982 scopus 로고    scopus 로고
    • Isolation and cultivation of Walsby's square archaeon
    • 10.1111/j.1462-2920.2004.00692.x, 15560825
    • Bolhuis H, tePoele EM, Rodriguez-Valera F. Isolation and cultivation of Walsby's square archaeon. Environ Microbiol 2004, 6:1287-1291. 10.1111/j.1462-2920.2004.00692.x, 15560825.
    • (2004) Environ Microbiol , vol.6 , pp. 1287-1291
    • Bolhuis, H.1    tePoele, E.M.2    Rodriguez-Valera, F.3
  • 21
    • 33747334086 scopus 로고    scopus 로고
    • The genome of the square archaeon Haloquadratum walsbyi: life at the limits of water activity
    • 10.1186/1471-2164-7-169, 1544339, 16820047
    • Bolhuis H, Palm P, Wende A, Falb M, Rampp M, Rodriguez-Valera F, Pfeiffer F, Oesterhelt D. The genome of the square archaeon Haloquadratum walsbyi: life at the limits of water activity. BMC Genomics 2006, 7:169. 10.1186/1471-2164-7-169, 1544339, 16820047.
    • (2006) BMC Genomics , vol.7 , pp. 169
    • Bolhuis, H.1    Palm, P.2    Wende, A.3    Falb, M.4    Rampp, M.5    Rodriguez-Valera, F.6    Pfeiffer, F.7    Oesterhelt, D.8
  • 22
    • 0036200510 scopus 로고    scopus 로고
    • Salinibacter ruber gen. nov., sp. nov., a novel, extremely halophilic member of the Bacteria from saltern crystallizer ponds
    • Antón J, Oren A, Benlloch S, Rodríguez-Valera F, Amann R, Rosselló-Mora R. Salinibacter ruber gen. nov., sp. nov., a novel, extremely halophilic member of the Bacteria from saltern crystallizer ponds. Int J Syst Evol Microbiol 2002, 52:485-491.
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 485-491
    • Antón, J.1    Oren, A.2    Benlloch, S.3    Rodríguez-Valera, F.4    Amann, R.5    Rosselló-Mora, R.6
  • 24
    • 0015219101 scopus 로고
    • Enzymic Hydrolysis of Colanic Acid
    • 10.1111/j.1432-1033.1971.tb01657.x, 4945117
    • Sutherland IW. Enzymic Hydrolysis of Colanic Acid. Eur J Biochem 1971, 23:582-587. 10.1111/j.1432-1033.1971.tb01657.x, 4945117.
    • (1971) Eur J Biochem , vol.23 , pp. 582-587
    • Sutherland, I.W.1
  • 25
    • 0345097432 scopus 로고    scopus 로고
    • Biosynthesis of O-antigens: genes and pathways involved in nucleotide sugar precursor synthesis and O-antigen assembly
    • 10.1016/j.carres.2003.07.009, 14670712
    • Samuel G, Reeves P. Biosynthesis of O-antigens: genes and pathways involved in nucleotide sugar precursor synthesis and O-antigen assembly. Carbohydr Res 2003, 338:2503-2519. 10.1016/j.carres.2003.07.009, 14670712.
    • (2003) Carbohydr Res , vol.338 , pp. 2503-2519
    • Samuel, G.1    Reeves, P.2
  • 26
    • 0029910083 scopus 로고    scopus 로고
    • Roles of Exopolysaccharides and Lipopolysaccharides in the Adsorption of the Siphovirus Phage NM8 to Rhizobium meliloti M11S Cells
    • 10.1007/s002849900130, 8900103
    • Defives C, Werquin M, Mary P, Hornez JP. Roles of Exopolysaccharides and Lipopolysaccharides in the Adsorption of the Siphovirus Phage NM8 to Rhizobium meliloti M11S Cells. Curr Microbiol 1996, 33:371-376. 10.1007/s002849900130, 8900103.
    • (1996) Curr Microbiol , vol.33 , pp. 371-376
    • Defives, C.1    Werquin, M.2    Mary, P.3    Hornez, J.P.4
  • 27
    • 0034602835 scopus 로고    scopus 로고
    • Translocation of group 1 capsular polysaccharide to the surface of Escherichia coli requires a multimeric complex in the outer membrane
    • 10.1093/emboj/19.1.57, 1171777, 10619844
    • Drummelsmith J, Whitfield C. Translocation of group 1 capsular polysaccharide to the surface of Escherichia coli requires a multimeric complex in the outer membrane. EMBO J 2000, 19:57-66. 10.1093/emboj/19.1.57, 1171777, 10619844.
    • (2000) EMBO J , vol.19 , pp. 57-66
    • Drummelsmith, J.1    Whitfield, C.2
  • 28
    • 0028797155 scopus 로고
    • Molecular, genetic, and topological characterization of O-antigen chain length regulation in Shigella flexneri
    • 176702, 7532168
    • Morona R, Bosch L, Manning PA. Molecular, genetic, and topological characterization of O-antigen chain length regulation in Shigella flexneri. J Bacteriol 1995, 177:1059-1068. 176702, 7532168.
    • (1995) J Bacteriol , vol.177 , pp. 1059-1068
    • Morona, R.1    Bosch, L.2    Manning, P.A.3
  • 29
    • 33751504620 scopus 로고    scopus 로고
    • Plasmid-encoded antirestriction protein ArdA can discriminate between type I methyltransferase and complete restriction-modification system
    • 10.1016/j.jmb.2006.09.087, 17069852
    • Nekrasov SV, Agafonova OV, Belogurova NG, Delver EP, Belogurov AA. Plasmid-encoded antirestriction protein ArdA can discriminate between type I methyltransferase and complete restriction-modification system. J Mol Biol 2007, 365:284-97. 10.1016/j.jmb.2006.09.087, 17069852.
    • (2007) J Mol Biol , vol.365 , pp. 284-297
    • Nekrasov, S.V.1    Agafonova, O.V.2    Belogurova, N.G.3    Delver, E.P.4    Belogurov, A.A.5
  • 30
    • 0036776766 scopus 로고    scopus 로고
    • MazG, a nucleoside triphosphate pyrophosphohydrolase, interacts with Era, an essential GTPase in Escherichia coli
    • Zhang J, Inouye M. MazG, a nucleoside triphosphate pyrophosphohydrolase, interacts with Era, an essential GTPase in Escherichia coli. J Bacteriology 2002, 184:5323-5329.
    • (2002) J Bacteriology , vol.184 , pp. 5323-5329
    • Zhang, J.1    Inouye, M.2
  • 31
    • 0142222533 scopus 로고    scopus 로고
    • Birth and Death of Orphan Genes in Rickettsia
    • 10.1093/molbev/msg175, 12832625
    • Amiri H, Davids W, Andersson SGE. Birth and Death of Orphan Genes in Rickettsia. Mol Biol Evol 2003, 20:1575-1587. 10.1093/molbev/msg175, 12832625.
    • (2003) Mol Biol Evol , vol.20 , pp. 1575-1587
    • Amiri, H.1    Davids, W.2    Andersson, S.G.E.3
  • 34
    • 58549087183 scopus 로고    scopus 로고
    • Coastal Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity
    • 10.1111/j.1462-2920.2008.01772.x, 19196269
    • Palenik B, Ren Q, Tai V, Paulsen IT. Coastal Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity. Environ Microbiol 2009, 11:349-359. 10.1111/j.1462-2920.2008.01772.x, 19196269.
    • (2009) Environ Microbiol , vol.11 , pp. 349-359
    • Palenik, B.1    Ren, Q.2    Tai, V.3    Paulsen, I.T.4
  • 37
    • 0002058563 scopus 로고    scopus 로고
    • Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand
    • Thingstad TF, Lignell R. Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand. Aquat Microb Ecol 1997, 13:19-27.
    • (1997) Aquat Microb Ecol , vol.13 , pp. 19-27
    • Thingstad, T.F.1    Lignell, R.2
  • 38
    • 21344473000 scopus 로고    scopus 로고
    • Predation on prokaryotes in the water column and its ecological implications
    • 10.1038/nrmicro1180, 15953930
    • Pernthaler J. Predation on prokaryotes in the water column and its ecological implications. Nat Rev Microbiol 2005, 3:537-546. 10.1038/nrmicro1180, 15953930.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 537-546
    • Pernthaler, J.1
  • 39
    • 74049109969 scopus 로고    scopus 로고
    • Phage specificity and lipopolysaccarides of stem- and root-nodulating bacteria (Azorhizobium caulinodans, Sinorhizobium spp., and Rhizobium spp.) of Sesbania spp
    • Sharma RS, Mishra V, Mohmmed A, Babu CR. Phage specificity and lipopolysaccarides of stem- and root-nodulating bacteria (Azorhizobium caulinodans, Sinorhizobium spp., and Rhizobium spp.) of Sesbania spp. Arch Microbiol 2007,
    • (2007) Arch Microbiol
    • Sharma, R.S.1    Mishra, V.2    Mohmmed, A.3    Babu, C.R.4
  • 40
    • 49449098862 scopus 로고    scopus 로고
    • Streptococcus thermophilus core genome: comparative genome hybridization study of 47 strains
    • 10.1128/AEM.00132-08, 2519362, 18539806
    • Rasmussen TB, Danielsen M, Valina O, Garrigues C, Johansen E, Pedersen MB. Streptococcus thermophilus core genome: comparative genome hybridization study of 47 strains. Appl Environ Microbiol 2008, 74:4703-4710. 10.1128/AEM.00132-08, 2519362, 18539806.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 4703-4710
    • Rasmussen, T.B.1    Danielsen, M.2    Valina, O.3    Garrigues, C.4    Johansen, E.5    Pedersen, M.B.6
  • 43
    • 0033485517 scopus 로고    scopus 로고
    • Improved microbial gene identification with GLIMMER
    • 10.1093/nar/27.23.4636, 148753, 10556321
    • Delcher AL, Harmon D, Kasif S, White O, Salzberg SL. Improved microbial gene identification with GLIMMER. Nucleic Acids Res 1999, 27:4636-4641. 10.1093/nar/27.23.4636, 148753, 10556321.
    • (1999) Nucleic Acids Res , vol.27 , pp. 4636-4641
    • Delcher, A.L.1    Harmon, D.2    Kasif, S.3    White, O.4    Salzberg, S.L.5
  • 44
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: the European Molecular Biology Open Software Suite
    • 10.1016/S0168-9525(00)02024-2, 10827456
    • Rice P, Longden I, Bleasby A. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 2000, 16:276-277. 10.1016/S0168-9525(00)02024-2, 10827456.
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.