메뉴 건너뛰기




Volumn 14, Issue 3, 2013, Pages 375-390

Bioinformatics tools and challenges in structural analysis of lipidomics MS/MS data

Author keywords

Analysis tools; High throughput; Lipidomics; MS MS data analysis; MS MS detection algorithms

Indexed keywords


EID: 84878492480     PISSN: 14675463     EISSN: 14774054     Source Type: Journal    
DOI: 10.1093/bib/bbs030     Document Type: Article
Times cited : (28)

References (133)
  • 1
    • 22144478635 scopus 로고    scopus 로고
    • The emerging field of lipidomics
    • Wenk MR. The emerging field of lipidomics. NatRevDrug Discov 2005;4(7):594-610.
    • (2005) Nat Rev Drug Discov , vol.4 , Issue.7 , pp. 594-610
    • Wenk, M.R.1
  • 2
    • 60549109072 scopus 로고    scopus 로고
    • Lipidomics joins the omics evolution
    • Dennis EA. Lipidomics joins the omics evolution. ProcNatl Acad SciUSA 2009;106(7):2089-90.
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.7 , pp. 2089-2090
    • Dennis, E.A.1
  • 3
    • 78649980497 scopus 로고    scopus 로고
    • Lipidomics: new tools and applications
    • Wenk MR. Lipidomics: new tools and applications. Cell 2010;143(6):888-95.
    • (2010) Cell , vol.143 , Issue.6 , pp. 888-895
    • Wenk, M.R.1
  • 4
    • 59649105735 scopus 로고    scopus 로고
    • Dysregulation of lipid and amino acid metabolism precedes islet autoimmunity in children who later progress to type 1 diabetes
    • Oresic M, Simell S, Sysi-Aho M, etal. Dysregulation of lipid and amino acid metabolism precedes islet autoimmunity in children who later progress to type 1 diabetes. J ExpMed 2008;205(13):2975-84.
    • (2008) J Exp Med , vol.205 , Issue.13 , pp. 2975-2984
    • Oresic, M.1    Simell, S.2    Sysi-Aho, M.3
  • 5
    • 38449115897 scopus 로고    scopus 로고
    • Alzheimer's disease: the lipid connection
    • Hartmann T, Kuchenbecker J, Grimm MO. Alzheimer's disease: the lipid connection. J Neurochem 2007; 103(Suppl 1):159-70.
    • (2007) J Neurochem , vol.103 , Issue.SUPPL 1 , pp. 159-170
    • Hartmann, T.1    Kuchenbecker, J.2    Grimm, M.O.3
  • 6
    • 35548963066 scopus 로고    scopus 로고
    • Neurolipidomics: challenges and developments
    • Han X. Neurolipidomics: challenges and developments. Front Biosci 2007;12:2601-15.
    • (2007) Front Biosci , vol.12 , pp. 2601-2615
    • Han, X.1
  • 7
    • 33748090269 scopus 로고    scopus 로고
    • Effect of altering dietary omega-6/omega-3 fatty acid ratios on prostate cancer membrane composition, cyclooxygenase-2, and prostaglandin E2
    • Kobayashi N, Barnard RJ, Henning SM, et al. Effect of altering dietary omega-6/omega-3 fatty acid ratios on prostate cancer membrane composition, cyclooxygenase-2, and prostaglandin E2. Clin Cancer Res 2006;12(15):4662-70.
    • (2006) Clin Cancer Res , vol.12 , Issue.15 , pp. 4662-4670
    • Kobayashi, N.1    Barnard, R.J.2    Henning, S.M.3
  • 8
    • 34748912615 scopus 로고    scopus 로고
    • Fatty acid synthase and the lipogenic phenotype in cancer pathogenesis
    • Menendez JA, Lupu R. Fatty acid synthase and the lipogenic phenotype in cancer pathogenesis. Nat Rev Cancer 2007;7(10):763-77.
    • (2007) Nat Rev Cancer , vol.7 , Issue.10 , pp. 763-777
    • Menendez, J.A.1    Lupu, R.2
  • 9
    • 77955799815 scopus 로고    scopus 로고
    • Oral fingolimod (FTY720) for relapsing multiple sclerosis
    • Kappos L, Antel J, Comi G, etal. Oral fingolimod (FTY720) for relapsing multiple sclerosis. N EnglJMed 2006;355(11): 1124-40.
    • (2006) N Engl J Med , vol.355 , Issue.11 , pp. 1124-1140
    • Kappos, L.1    Antel, J.2    Comi, G.3
  • 10
    • 55949089964 scopus 로고    scopus 로고
    • High throughput lipidomic profiling of schizophrenia and bipolar disorder brain tissue reveals alterations of free fatty acids, phosphatidylcholines, and ceramides
    • Schwarz E, Prabakaran S, Whitfield P, et al. High throughput lipidomic profiling of schizophrenia and bipolar disorder brain tissue reveals alterations of free fatty acids, phosphatidylcholines, and ceramides. J Proteome Res 2008;7(10): 4266-77.
    • (2008) J Proteome Res , vol.7 , Issue.10 , pp. 4266-4277
    • Schwarz, E.1    Prabakaran, S.2    Whitfield, P.3
  • 11
    • 0034648768 scopus 로고    scopus 로고
    • Atherosclerosis
    • Lusis AJ. Atherosclerosis. Nature 2000;407(6801):233-41.
    • (2000) Nature , vol.407 , Issue.6801 , pp. 233-241
    • Lusis, A.J.1
  • 12
    • 0035680938 scopus 로고    scopus 로고
    • Recent developments concerning diet and hypertension
    • Beilin LJ, Burke V, Puddey IB, et al. Recent developments concerning diet and hypertension. Clin Exp Pharmacol Physiol 2001;28(12):1078-82.
    • (2001) Clin Exp Pharmacol Physiol , vol.28 , Issue.12 , pp. 1078-1082
    • Beilin, L.J.1    Burke, V.2    Puddey, I.B.3
  • 13
    • 77952721703 scopus 로고    scopus 로고
    • Thirty-fiveyear trends in cardiovascular risk factors in Finland
    • Vartiainen E, Laatikainen T, Peltonen M, et al. Thirty-fiveyear trends in cardiovascular risk factors in Finland. Int J Epidemiol 2010;39(2):504-18.
    • (2010) Int J Epidemiol , vol.39 , Issue.2 , pp. 504-518
    • Vartiainen, E.1    Laatikainen, T.2    Peltonen, M.3
  • 14
    • 0036816141 scopus 로고    scopus 로고
    • Lubricating cell signaling pathways with gangliosides
    • Allende ML, Proia RL. Lubricating cell signaling pathways with gangliosides. Curr Opin Struct Biol 2002;12(5):587-92.
    • (2002) Curr Opin Struct Biol , vol.12 , Issue.5 , pp. 587-592
    • Allende, M.L.1    Proia, R.L.2
  • 15
    • 77954956306 scopus 로고    scopus 로고
    • Lipidomics: coming to grips with lipid diversity
    • Shevchenko A, Simons K. Lipidomics: coming to grips with lipid diversity. Nat RevMol Cell Biol 2010;11(8):593-8.
    • (2010) Nat Rev Mol Cell Biol , vol.11 , Issue.8 , pp. 593-598
    • Shevchenko, A.1    Simons, K.2
  • 17
    • 69249136669 scopus 로고    scopus 로고
    • Working towards an exegesis for lipids in biology
    • Brown HA, Murphy RC. Working towards an exegesis for lipids in biology. Nat ChemBiol 2009;5(9):602-6.
    • (2009) Nat Chem Biol , vol.5 , Issue.9 , pp. 602-606
    • Brown, H.A.1    Murphy, R.C.2
  • 18
    • 0141653274 scopus 로고    scopus 로고
    • Global analyses of cellular lipidomes directly from crude extracts of biological samples by ESI mass spectrometry: a bridge to lipidomics
    • Han X, Gross RW. Global analyses of cellular lipidomes directly from crude extracts of biological samples by ESI mass spectrometry: a bridge to lipidomics. J Lipid Res 2003;44(6):1071-9.
    • (2003) J Lipid Res , vol.44 , Issue.6 , pp. 1071-1079
    • Han, X.1    Gross, R.W.2
  • 19
    • 1842428733 scopus 로고    scopus 로고
    • Computational lipidomics: a multiplexed analysis of dynamic changes in membrane lipid composition during signal transduction
    • Forrester JS, Milne SB, Ivanova PT, et al. Computational lipidomics: a multiplexed analysis of dynamic changes in membrane lipid composition during signal transduction. Mol Pharmacol 2004;65(4):813-21.
    • (2004) Mol Pharmacol , vol.65 , Issue.4 , pp. 813-821
    • Forrester, J.S.1    Milne, S.B.2    Ivanova, P.T.3
  • 20
    • 25144443228 scopus 로고    scopus 로고
    • Cellular lipidomics
    • van Meer G. Cellular lipidomics. EMBO J 2005;24(18): 3159-65.
    • (2005) EMBO J , vol.24 , Issue.18 , pp. 3159-3165
    • van Meer, G.1
  • 21
    • 78649685767 scopus 로고    scopus 로고
    • A mouse macrophage lipidome
    • Dennis EA, Deems RA, Harkewicz R, et al. A mouse macrophage lipidome. J Biol Chem 2010;285(51):39976-85.
    • (2010) J Biol Chem , vol.285 , Issue.51 , pp. 39976-39985
    • Dennis, E.A.1    Deems, R.A.2    Harkewicz, R.3
  • 22
    • 0034714424 scopus 로고    scopus 로고
    • Functional genomics by mass spectrometry
    • Andersen JS, Mann M. Functional genomics by mass spectrometry. FEBS Lett 2000;480(1):25-31.
    • (2000) FEBS Lett , vol.480 , Issue.1 , pp. 25-31
    • Andersen, J.S.1    Mann, M.2
  • 23
    • 0032189648 scopus 로고    scopus 로고
    • Cholesterol vehicle in experimental atherosclerosis. 21. native and randomized lard and tallow
    • Kritchevsky D, Tepper SA, Kuksis A, et al. Cholesterol vehicle in experimental atherosclerosis. 21. native and randomized lard and tallow. JNutr Biochem 1998;9(10):582-5.
    • (1998) J Nutr Biochem , vol.9 , Issue.10 , pp. 582-585
    • Kritchevsky, D.1    Tepper, S.A.2    Kuksis, A.3
  • 24
    • 0034882947 scopus 로고    scopus 로고
    • Studies on effects of dietary fatty acids as related to their position on triglycerides
    • Hunter JE. Studies on effects of dietary fatty acids as related to their position on triglycerides. Lipids 2001;36(7):655-68.
    • (2001) Lipids , vol.36 , Issue.7 , pp. 655-668
    • Hunter, J.E.1
  • 25
    • 34547859673 scopus 로고    scopus 로고
    • Effects of stereospecific positioning of fatty acids in triacylglycerol structures in native and randomized fats: a review of their nutritional implications
    • Karupaiah T, Sundram K. Effects of stereospecific positioning of fatty acids in triacylglycerol structures in native and randomized fats: a review of their nutritional implications. NutrMetab 2007;4:16.
    • (2007) Nutr Metab , vol.4 , pp. 16
    • Karupaiah, T.1    Sundram, K.2
  • 26
    • 0032102323 scopus 로고    scopus 로고
    • Diacylglycerols and phosphatidates: which molecular species are intracellular messengers?
    • Hodgkin MN, Pettitt TR, Martin A, et al. Diacylglycerols and phosphatidates: which molecular species are intracellular messengers? Trends Biochem Sci 1998;23(6):200-4.
    • (1998) Trends Biochem Sci , vol.23 , Issue.6 , pp. 200-204
    • Hodgkin, M.N.1    Pettitt, T.R.2    Martin, A.3
  • 27
    • 0034964992 scopus 로고    scopus 로고
    • The biologically active isomers of conjugated linoleic acid
    • Pariza MW, Park Y, Cook ME. The biologically active isomers of conjugated linoleic acid. Prog Lipid Res 2001; 40(4):283-98.
    • (2001) Prog Lipid Res , vol.40 , Issue.4 , pp. 283-298
    • Pariza, M.W.1    Park, Y.2    Cook, M.E.3
  • 28
    • 84987419408 scopus 로고
    • Proposal for a common nomenclature for sequence ions in mass spectra of peptides
    • Roepstorff P, Fohlman J. Proposal for a common nomenclature for sequence ions in mass spectra of peptides. Biomed Mass Spectrom 1984;11(11):601.
    • (1984) Biomed Mass Spectrom , vol.11 , Issue.11 , pp. 601
    • Roepstorff, P.1    Fohlman, J.2
  • 29
    • 0023449998 scopus 로고
    • Novel fragmentation process of peptides by collision-induced decomposition in a tandem mass spectrometer: differentiation of leucine and isoleucine
    • Johnson RS, Martin SA, Biemann K, et al. Novel fragmentation process of peptides by collision-induced decomposition in a tandem mass spectrometer: differentiation of leucine and isoleucine. Anal Chem 1987;59(21):2621-5.
    • (1987) Anal Chem , vol.59 , Issue.21 , pp. 2621-2625
    • Johnson, R.S.1    Martin, S.A.2    Biemann, K.3
  • 30
    • 39149087366 scopus 로고    scopus 로고
    • Hybrid mass spectrometers for tandem mass spectrometry
    • Glish GL, Burinsky DJ. Hybrid mass spectrometers for tandem mass spectrometry. J Am Soc Mass Spectrom 2008; 19(2):161-72.
    • (2008) J Am Soc Mass Spectrom , vol.19 , Issue.2 , pp. 161-172
    • Glish, G.L.1    Burinsky, D.J.2
  • 31
    • 20044361846 scopus 로고    scopus 로고
    • Electrospray ionization with low-energy collisionally activated dissociation tandem mass spectrometry of ccomplex lipids: structural characterization and mechanisms of fragmentation
    • In: Byrdwell WC, (ed). Modern Methods for Lipid Analysis by Liquid ChromatographyçMass Spectrometry and Related Techniques. Champaign, IL: American Oil Chemists Society Press,
    • Hsu FF, Turk J. Electrospray ionization with low-energy collisionally activated dissociation tandem mass spectrometry of ccomplex lipids: structural characterization and mechanisms of fragmentation. In: Byrdwell WC, (ed). Modern Methods for Lipid Analysis by Liquid ChromatographyçMass Spectrometry and Related Techniques. Champaign, IL: American Oil Chemists Society Press, 2005;61-179.
    • (2005) , pp. 61-179
    • Hsu, F.F.1    Turk, J.2
  • 32
    • 0032232019 scopus 로고    scopus 로고
    • Formation of lithiat ed adducts of glycerophosphocholine lipids facilitates their identification by electrospray ionization tandem mass spectrometry
    • Hsu FF, Bohrer A, Turk J. Formation of lithiat ed adducts of glycerophosphocholine lipids facilitates their identification by electrospray ionization tandem mass spectrometry. JAm SocMass Spectrom 1998;9(5):516-26.
    • (1998) J Am Soc Mass Spectrom , vol.9 , Issue.5 , pp. 516-526
    • Hsu, F.F.1    Bohrer, A.2    Turk, J.3
  • 33
    • 0033404418 scopus 로고    scopus 로고
    • Structural characterization of triacylglycerols as lithiated adducts by electrospray ionization mass spectrometry using low-energy collisionally activated dissociation on a triple stage quadrupole instrument
    • Hsu FF, Turk J. Structural characterization of triacylglycerols as lithiated adducts by electrospray ionization mass spectrometry using low-energy collisionally activated dissociation on a triple stage quadrupole instrument. JAmSoc Mass Spectrom 1999;10(7):587-99.
    • (1999) J Am Soc Mass Spectrom , vol.10 , Issue.7 , pp. 587-599
    • Hsu, F.F.1    Turk, J.2
  • 34
    • 0033451330 scopus 로고    scopus 로고
    • Distinction among isomeric unsaturated fatty acids as lithiated adducts by electrospray ionization mass spectrometry using low energy collisionally activated dissociation on a triple stage quadrupole instrument
    • Hsu FF, Turk J. Distinction among isomeric unsaturated fatty acids as lithiated adducts by electrospray ionization mass spectrometry using low energy collisionally activated dissociation on a triple stage quadrupole instrument. JAm SocMass Spectrom 1999;10(7):600-12.
    • (1999) J Am Soc Mass Spectrom , vol.10 , Issue.7 , pp. 600-612
    • Hsu, F.F.1    Turk, J.2
  • 35
    • 0034181111 scopus 로고    scopus 로고
    • Characterization of phosphatidylethanolamine as a lithiated adduct by triple quadrupole tandem mass spectrometry with electrospray ionization
    • Hsu FF, Turk J. Characterization of phosphatidylethanolamine as a lithiated adduct by triple quadrupole tandem mass spectrometry with electrospray ionization. J Mass Spectrom 2000;35(5):595-606.
    • (2000) J Mass Spectrom , vol.35 , Issue.5 , pp. 595-606
    • Hsu, F.F.1    Turk, J.2
  • 36
    • 0034481642 scopus 로고    scopus 로고
    • Charge-driven fragmentation processes in diacyl glycerophosphatidic acids upon low-energy collisional activation. A mechanistic proposal
    • Hsu FF, Turk J. Charge-driven fragmentation processes in diacyl glycerophosphatidic acids upon low-energy collisional activation. A mechanistic proposal. J Am Soc Mass Spectrom 2000;11(9):797-803.
    • (2000) J Am Soc Mass Spectrom , vol.11 , Issue.9 , pp. 797-803
    • Hsu, F.F.1    Turk, J.2
  • 37
    • 0033856558 scopus 로고    scopus 로고
    • Twodimensional analysis of phospholipids by capillary liquid chromatography/electrospray ionization mass spectrometry
    • Taguchi R, Hayakawa J, Takeuchi Y, et al. Twodimensional analysis of phospholipids by capillary liquid chromatography/electrospray ionization mass spectrometry. JMass Spectrom 2000;35(8):953-66.
    • (2000) J Mass Spectrom , vol.35 , Issue.8 , pp. 953-966
    • Taguchi, R.1    Hayakawa, J.2    Takeuchi, Y.3
  • 38
    • 0034484848 scopus 로고    scopus 로고
    • Charge-remote and charge-driven fragmentation processes in diacyl glycerophosphoethanolamine upon low-energy collisional activation: a mechanistic proposal
    • Hsu FF, Turk J. Charge-remote and charge-driven fragmentation processes in diacyl glycerophosphoethanolamine upon low-energy collisional activation: a mechanistic proposal. JAm SocMass Spectrom 2000;11(10):892-9.
    • (2000) J Am Soc Mass Spectrom , vol.11 , Issue.10 , pp. 892-899
    • Hsu, F.F.1    Turk, J.2
  • 39
    • 0034487745 scopus 로고    scopus 로고
    • Characterization of phosphatidylinositol, phosphatidylinositol-4-phosphate, and phosphatidylinositol- 4,5-bisphosphate by electrospray ionization tandem mass spectrometry: a mechanistic study
    • Hsu FF, Turk J. Characterization of phosphatidylinositol, phosphatidylinositol-4-phosphate, and phosphatidylinositol- 4,5-bisphosphate by electrospray ionization tandem mass spectrometry: a mechanistic study. J Am Soc Mass Spectrom 2000;11(11):986-99.
    • (2000) J Am Soc Mass Spectrom , vol.11 , Issue.11 , pp. 986-999
    • Hsu, F.F.1    Turk, J.2
  • 40
    • 0035561115 scopus 로고    scopus 로고
    • Studies on phosphatidylglycerol with triple quadrupole tandem mass spectrometry with electrospray ionization: fragmentation processes and structural characterization
    • Hsu FF, Turk J. Studies on phosphatidylglycerol with triple quadrupole tandem mass spectrometry with electrospray ionization: fragmentation processes and structural characterization. JAm SocMass Spectrom 2001;12(9):1036-43.
    • (2001) J Am Soc Mass Spectrom , vol.12 , Issue.9 , pp. 1036-1043
    • Hsu, F.F.1    Turk, J.2
  • 41
    • 0036500210 scopus 로고    scopus 로고
    • Quantitative profiling of phospholipids by multiple precursor ion scanning on a hybrid quadrupole time-of-flight mass spectrometer
    • Ekroos K, Chernushevich IV, Simons K, et al. Quantitative profiling of phospholipids by multiple precursor ion scanning on a hybrid quadrupole time-of-flight mass spectrometer. Anal Chem 2002;74:941-9.
    • (2002) Anal Chem , vol.74 , pp. 941-949
    • Ekroos, K.1    Chernushevich, I.V.2    Simons, K.3
  • 42
    • 0037236244 scopus 로고    scopus 로고
    • Metal ion ccomplexes in the structural analysis of phospholipids by electrospray ionization tandem mass spectrometry
    • Ho YP, Huang PC, Deng KH. Metal ion ccomplexes in the structural analysis of phospholipids by electrospray ionization tandem mass spectrometry. Rapid Commun Mass Spectrom 2003;17(2):114-21.
    • (2003) Rapid Commun Mass Spectrom , vol.17 , Issue.2 , pp. 114-121
    • Ho, Y.P.1    Huang, P.C.2    Deng, K.H.3
  • 43
    • 0041698340 scopus 로고    scopus 로고
    • Characterization of alkylacyl, alk-1-enylacyl and lyso subclasses of glycerophosphocholine by tandem quadrupole mass spectrometry with electrospray ionization
    • Hsu FF, Turk J, Thukkani AK, et al. Characterization of alkylacyl, alk-1-enylacyl and lyso subclasses of glycerophosphocholine by tandem quadrupole mass spectrometry with electrospray ionization. JMass Spectrom 2003;38(7):752-63.
    • (2003) J Mass Spectrom , vol.38 , Issue.7 , pp. 752-763
    • Hsu, F.F.1    Turk, J.2    Thukkani, A.K.3
  • 44
    • 0037975593 scopus 로고    scopus 로고
    • Electrospray ionization/tandem quadrupole mass spectrometric studies on phosphatidylcholines: the fragmentation processes
    • Hsu FF, Turk J. Electrospray ionization/tandem quadrupole mass spectrometric studies on phosphatidylcholines: the fragmentation processes. JAm SocMass Spectrom 2003;14(4): 352-63.
    • (2003) J Am Soc Mass Spectrom , vol.14 , Issue.4 , pp. 352-363
    • Hsu, F.F.1    Turk, J.2
  • 45
    • 0345098355 scopus 로고    scopus 로고
    • Charting molecular composition of phosphatidylcholines by fatty acid scanning and ion trap MS3 fragmentation
    • Ekroos K, Ejsing CS, Bahr U, et al. Charting molecular composition of phosphatidylcholines by fatty acid scanning and ion trap MS3 fragmentation. J Lipid Res 2003;44: 2181-92.
    • (2003) J Lipid Res , vol.44 , pp. 2181-2192
    • Ekroos, K.1    Ejsing, C.S.2    Bahr, U.3
  • 46
    • 0345862111 scopus 로고    scopus 로고
    • Characterization of acylphosphatidylglycerols from Salmonella typhimurium by tandem mass spectrometry with electrospray ionization
    • Hsu FF, Turk J, Shi Y, et al. Characterization of acylphosphatidylglycerols from Salmonella typhimurium by tandem mass spectrometry with electrospray ionization. J Am Soc Mass Spectrom 2004;15(1):1-11.
    • (2004) J Am Soc Mass Spectrom , vol.15 , Issue.1 , pp. 1-11
    • Hsu, F.F.1    Turk, J.2    Shi, Y.3
  • 47
    • 10844283577 scopus 로고    scopus 로고
    • Rapid and selective identification of molecular species in phosphatidylcholine and sphingomyelin by conditional neutral loss scanning and MS3
    • Houjou T, Yamatani K, Nakanishi H, et al. Rapid and selective identification of molecular species in phosphatidylcholine and sphingomyelin by conditional neutral loss scanning and MS3. Rapid Commun Mass Spectrom 2004; 18(24):3123-30.
    • (2004) Rapid Commun Mass Spectrom , vol.18 , Issue.24 , pp. 3123-3130
    • Houjou, T.1    Yamatani, K.2    Nakanishi, H.3
  • 48
    • 15744378826 scopus 로고    scopus 로고
    • Structural characterization of cardiolipin by tandem quadrupole and multiplestage quadrupole ion-trap mass spectrometry with electrospray ionization
    • Hsu FF, Turk J, Rhoades ER, et al. Structural characterization of cardiolipin by tandem quadrupole and multiplestage quadrupole ion-trap mass spectrometry with electrospray ionization. J Am Soc Mass Spectrom 2005;16(4): 491-504.
    • (2005) J Am Soc Mass Spectrom , vol.16 , Issue.4 , pp. 491-504
    • Hsu, F.F.1    Turk, J.2    Rhoades, E.R.3
  • 49
    • 23844509905 scopus 로고    scopus 로고
    • Studies on phosphatidylserine by tandem quadrupole and multiple stage quadrupole ion-trap mass spectrometry with electrospray ionization: structural characterization and the fragmentation processes
    • Hsu FF, Turk J. Studies on phosphatidylserine by tandem quadrupole and multiple stage quadrupole ion-trap mass spectrometry with electrospray ionization: structural characterization and the fragmentation processes. J Am Soc Mass Spectrom 2005;16(9):1510-22.
    • (2005) J Am Soc Mass Spectrom , vol.16 , Issue.9 , pp. 1510-1522
    • Hsu, F.F.1    Turk, J.2
  • 50
    • 33344470892 scopus 로고    scopus 로고
    • Characterization of cardiolipin from Escherichia coli by electrospray ionization with multiple stage quadrupole ion-trap mass spectrometric analysis of [M - 2H p Na]- ions
    • Hsu FF, Turk J. Characterization of cardiolipin from Escherichia coli by electrospray ionization with multiple stage quadrupole ion-trap mass spectrometric analysis of [M - 2H p Na]- ions. J Am Soc Mass Spectrom 2006;17(3): 420-9.
    • (2006) J Am Soc Mass Spectrom , vol.17 , Issue.3 , pp. 420-429
    • Hsu, F.F.1    Turk, J.2
  • 51
    • 33746268123 scopus 로고    scopus 로고
    • Characterization of cardiolipin as the sodiated ions by positive-ion electrospray ionization with multiple stage quadrupole ion-trap mass spectrometry
    • Hsu FF, Turk J. Characterization of cardiolipin as the sodiated ions by positive-ion electrospray ionization with multiple stage quadrupole ion-trap mass spectrometry. JAm SocMass Spectrom 2006;17(8):1146-57.
    • (2006) J Am Soc Mass Spectrom , vol.17 , Issue.8 , pp. 1146-1157
    • Hsu, F.F.1    Turk, J.2
  • 52
    • 34248220964 scopus 로고    scopus 로고
    • Electrospray mass spectrometry of human hair wax esters
    • Fitzgerald M, Murphy RC. Electrospray mass spectrometry of human hair wax esters. J Lipid Res 2007;48(5): 1231-46.
    • (2007) J Lipid Res , vol.48 , Issue.5 , pp. 1231-1246
    • Fitzgerald, M.1    Murphy, R.C.2
  • 53
    • 33847041743 scopus 로고    scopus 로고
    • Structural characterization of phosphatidyl-myo-inositol mannosides from Mycobacterium bovis Bacillus Calmette Guerin by multiplestage quadrupole ion-trap mass spectrometry with electrospray ionization. II. Monoacyl- and diacyl-PIMs
    • Hsu FF, Turk J, Owens RM, et al. Structural characterization of phosphatidyl-myo-inositol mannosides from Mycobacterium bovis Bacillus Calmette Guerin by multiplestage quadrupole ion-trap mass spectrometry with electrospray ionization. II. Monoacyl- and diacyl-PIMs. JAm Soc Mass Spectrom 2007;18(3):479-92.
    • (2007) J Am Soc Mass Spectrom , vol.18 , Issue.3 , pp. 479-492
    • Hsu, F.F.1    Turk, J.2    Owens, R.M.3
  • 54
    • 33947408747 scopus 로고    scopus 로고
    • Electrospray ionization multiple stage quadrupole ion-trap and tandem quadrupole mass spectrometric studies on phosphatidylglycerol from Arabidopsis leaves
    • Hsu FF, Turk J, Williams TD, et al. Electrospray ionization multiple stage quadrupole ion-trap and tandem quadrupole mass spectrometric studies on phosphatidylglycerol from Arabidopsis leaves. J Am Soc Mass Spectrom 2007;18(4): 783-90.
    • (2007) J Am Soc Mass Spectrom , vol.18 , Issue.4 , pp. 783-790
    • Hsu, F.F.1    Turk, J.2    Williams, T.D.3
  • 55
    • 34548133011 scopus 로고    scopus 로고
    • Characterization of inositol phosphorylceramides from Leishmania major by tandem mass spectrometry with electrospray ionization
    • Hsu FF, Turk J, Zhang K, et al. Characterization of inositol phosphorylceramides from Leishmania major by tandem mass spectrometry with electrospray ionization. J Am Soc Mass Spectrom 2007;18(9):1591-604.
    • (2007) J Am Soc Mass Spectrom , vol.18 , Issue.9 , pp. 1591-1604
    • Hsu, F.F.1    Turk, J.2    Zhang, K.3
  • 56
    • 35448972796 scopus 로고    scopus 로고
    • Differentiation of 1-O-alk-1'-enyl-2-acyl and 1-O-alkyl-2-acyl glycerophospholipids by multiplestage linear ion-trap mass spectrometry with electrospray ionization
    • Hsu FF, Turk J. Differentiation of 1-O-alk-1'-enyl-2-acyl and 1-O-alkyl-2-acyl glycerophospholipids by multiplestage linear ion-trap mass spectrometry with electrospray ionization. JAm SocMass Spectrom 2007;18(11):2065-73.
    • (2007) J Am Soc Mass Spectrom , vol.18 , Issue.11 , pp. 2065-2073
    • Hsu, F.F.1    Turk, J.2
  • 57
    • 55149124406 scopus 로고    scopus 로고
    • Elucidation of the double-bond position of long-chain unsaturated fatty acids by multiple-stage linear ion-trap mass spectrometry with electrospray ionization
    • Hsu FF, Turk J. Elucidation of the double-bond position of long-chain unsaturated fatty acids by multiple-stage linear ion-trap mass spectrometry with electrospray ionization. JAm SocMass Spectrom 2008;19(11):1673-80.
    • (2008) J Am Soc Mass Spectrom , vol.19 , Issue.11 , pp. 1673-1680
    • Hsu, F.F.1    Turk, J.2
  • 58
    • 67849129096 scopus 로고    scopus 로고
    • Electrospray ionization with low-energy collisionally activated dissociation tandem mass spectrometry of glycerophospholipids: mechanisms of fragmentation and structural characterization
    • Hsu FF, Turk J. Electrospray ionization with low-energy collisionally activated dissociation tandem mass spectrometry of glycerophospholipids: mechanisms of fragmentation and structural characterization. J Chromatogr B AnalytTechnol Biomed Life Sci 2009;877(26):2673-95.
    • (2009) J Chromatogr B Analyt Technol Biomed Life Sci , vol.877 , Issue.26 , pp. 2673-2695
    • Hsu, F.F.1    Turk, J.2
  • 59
    • 77950339312 scopus 로고    scopus 로고
    • Electrospray ionization multiple-stage linear ion-trap mass spectrometry for structural elucidation of triacylglycerols: assignment of fatty acyl groups on the glycerol backbone and location of double bonds
    • Hsu FF, Turk J. Electrospray ionization multiple-stage linear ion-trap mass spectrometry for structural elucidation of triacylglycerols: assignment of fatty acyl groups on the glycerol backbone and location of double bonds. JAm Soc Mass Spectrom 2010;21(4):657-69.
    • (2010) J Am Soc Mass Spectrom , vol.21 , Issue.4 , pp. 657-669
    • Hsu, F.F.1    Turk, J.2
  • 60
    • 77958159769 scopus 로고    scopus 로고
    • Toward total structural analysis of cardiolipins: multiple-stage linear ion-trap mass spectrometry on the [M - 2H p 3Li]p ions
    • Hsu FF, Turk J. Toward total structural analysis of cardiolipins: multiple-stage linear ion-trap mass spectrometry on the [M - 2H p 3Li]p ions. J Am Soc Mass Spectrom 2010; 21(11):1863-9.
    • (2010) J Am Soc Mass Spectrom , vol.21 , Issue.11 , pp. 1863-1869
    • Hsu, F.F.1    Turk, J.2
  • 61
    • 78650288400 scopus 로고    scopus 로고
    • Characterization of mycolic acids from the pathogen Rhodococcus equi by tandem mass spectrometry with electrospray ionization
    • Hsu FF, Soehl K, Turk J, et al. Characterization of mycolic acids from the pathogen Rhodococcus equi by tandem mass spectrometry with electrospray ionization. Anal Biochem 2011;409(1):112-22.
    • (2011) Anal Biochem , vol.409 , Issue.1 , pp. 112-122
    • Hsu, F.F.1    Soehl, K.2    Turk, J.3
  • 62
    • 84856352587 scopus 로고    scopus 로고
    • Structural elucidation of diglycosyl diacylglycerol and monoglycosyl diacylglycerol from Streptococcus pneumoniae by multiple-stage linear ion-trap mass spectrometry with electrospray ionization
    • Tatituri RV, Brenner MB, Turk J, et al. Structural elucidation of diglycosyl diacylglycerol and monoglycosyl diacylglycerol from Streptococcus pneumoniae by multiple-stage linear ion-trap mass spectrometry with electrospray ionization. JMass Spectrom 2012;47(1):115-23.
    • (2012) J Mass Spectrom , vol.47 , Issue.1 , pp. 115-123
    • Tatituri, R.V.1    Brenner, M.B.2    Turk, J.3
  • 64
    • 79960421231 scopus 로고    scopus 로고
    • New applications of mass spectrometry in lipid analysis
    • Murphy RC, Gaskell SJ. New applications of mass spectrometry in lipid analysis. J Biol Chem 2011;286(29): 25427-33.
    • (2011) J Biol Chem , vol.286 , Issue.29 , pp. 25427-25433
    • Murphy, R.C.1    Gaskell, S.J.2
  • 65
    • 84155172923 scopus 로고    scopus 로고
    • Multi-dimensional mass spectrometry-based shotgun lipidomics and novel strategies for lipidomic analyses
    • Han X, Yang K, Gross RW. Multi-dimensional mass spectrometry-based shotgun lipidomics and novel strategies for lipidomic analyses. Mass Spectrom Rev 2012;31(1): 134-78.
    • (2012) Mass Spectrom Rev , vol.31 , Issue.1 , pp. 134-178
    • Han, X.1    Yang, K.2    Gross, R.W.3
  • 66
    • 84878518571 scopus 로고    scopus 로고
    • Mass spectrometry based lipidomics: an overview of technological platforms
    • Köfeler HC, Fauland A, Rechberger GN, et al. Mass spectrometry based lipidomics: an overview of technological platforms. Metabolites 2012;2(1):19-38.
    • (2012) Metabolites , vol.2 , Issue.1 , pp. 19-38
    • Köfeler, H.C.1    Fauland, A.2    Rechberger, G.N.3
  • 67
    • 79960144635 scopus 로고    scopus 로고
    • Algorithms and tools for the preprocessing of LC-MS metabolomics data
    • Castillo S, Gopalacharyulu P, Yetukuri L, et al. Algorithms and tools for the preprocessing of LC-MS metabolomics data. Chemometr Intell Lab Syst 2011;108(1):23-32.
    • (2011) Chemometr Intell Lab Syst , vol.108 , Issue.1 , pp. 23-32
    • Castillo, S.1    Gopalacharyulu, P.2    Yetukuri, L.3
  • 68
    • 84878485753 scopus 로고    scopus 로고
    • Lipidomics, mass spectrometry and bioinformatics
    • In: Trajanoski Z, (ed). ComputationalMedicine. Vienna: Springer. in press. 69. Subramaniam S, Fahy E, Gupta S, et al. Bioinformatics and systems biology of the lipidome
    • Hartler J, Köfeler HC, Baker CJO, et al. Lipidomics, mass spectrometry and bioinformatics. In: Trajanoski Z, (ed). ComputationalMedicine. Vienna: Springer. in press.
    • (2011) Chem Rev , vol.111 , Issue.10 , pp. 6452-6490
    • Hartler, J.1    Köfeler, H.C.2    Baker, C.J.O.3
  • 69
    • 80054081844 scopus 로고    scopus 로고
    • Bioinformatics and systems biology of the lipidome
    • Subramaniam S, Fahy E, Gupta S, et al. Bioinformatics and systems biology of the lipidome. Chem Rev 2011;111(10): 6452-90.
    • (2011) Chem Rev , vol.111 , Issue.10 , pp. 6452-6490
    • Subramaniam, S.1    Fahy, E.2    Gupta, S.3
  • 70
    • 77952512222 scopus 로고    scopus 로고
    • Toward one step analysis of cellular lipidomes using liquid chromatography coupled with mass spectrometry: application to Saccharomyces cerevisiae and Schizosaccharomyces pombe lipidomics
    • Shui G, Guan XL, Low CP, et al. Toward one step analysis of cellular lipidomes using liquid chromatography coupled with mass spectrometry: application to Saccharomyces cerevisiae and Schizosaccharomyces pombe lipidomics. Mol Biosyst 2010;6(6):1008-17.
    • (2010) Mol Biosyst , vol.6 , Issue.6 , pp. 1008-1017
    • Shui, G.1    Guan, X.L.2    Low, C.P.3
  • 71
    • 33748468414 scopus 로고    scopus 로고
    • Metabolomics technology and bioinformatics
    • Shulaev V. Metabolomics technology and bioinformatics. Brief Bioinform 2006;7(2):128-39.
    • (2006) Brief Bioinform , vol.7 , Issue.2 , pp. 128-139
    • Shulaev, V.1
  • 72
    • 24744466553 scopus 로고    scopus 로고
    • Shotgun lipidomics of phosphoethanolamine-containing lipids in biological samples after one-step in situ derivatization
    • Han X, Yang K, Cheng H, et al. Shotgun lipidomics of phosphoethanolamine-containing lipids in biological samples after one-step in situ derivatization. J Lipid Res 2005; 46(7):1548-60.
    • (2005) J Lipid Res , vol.46 , Issue.7 , pp. 1548-1560
    • Han, X.1    Yang, K.2    Cheng, H.3
  • 73
    • 33748514364 scopus 로고    scopus 로고
    • Automated identification and quantification of glycerophospholipid molecular species by multiple precursor ion scanning
    • Ejsing CS, Duchoslav E, Sampaio J, et al. Automated identification and quantification of glycerophospholipid molecular species by multiple precursor ion scanning. Anal Chem 2006;78(17):6202-14.
    • (2006) Anal Chem , vol.78 , Issue.17 , pp. 6202-6214
    • Ejsing, C.S.1    Duchoslav, E.2    Sampaio, J.3
  • 74
    • 30744439808 scopus 로고    scopus 로고
    • Lipid profiling by multiple precursor and neutral loss scanning driven by the data-dependent acquisition
    • Schwudke D, Oegema J, Burton L, et al. Lipid profiling by multiple precursor and neutral loss scanning driven by the data-dependent acquisition. Anal Chem 2006;78(2):585-95.
    • (2006) Anal Chem , vol.78 , Issue.2 , pp. 585-595
    • Schwudke, D.1    Oegema, J.2    Burton, L.3
  • 75
    • 79960370644 scopus 로고    scopus 로고
    • Bottom-up shotgun lipidomics by higher energy collisional dissociation on LTQ Orbitrap mass spectrometers
    • Schuhmann K, Herzog R, Schwudke D, et al. Bottom-up shotgun lipidomics by higher energy collisional dissociation on LTQ Orbitrap mass spectrometers. Anal Chem 2011; 83(14):5480-7.
    • (2011) Anal Chem , vol.83 , Issue.14 , pp. 5480-5487
    • Schuhmann, K.1    Herzog, R.2    Schwudke, D.3
  • 76
    • 0141974064 scopus 로고    scopus 로고
    • Electrospray mass spectrometry of phospholipids
    • Pulfer M, Murphy RC. Electrospray mass spectrometry of phospholipids. Mass Spectrom Rev 2003;22(5):332-64.
    • (2003) Mass Spectrom Rev , vol.22 , Issue.5 , pp. 332-364
    • Pulfer, M.1    Murphy, R.C.2
  • 78
    • 41249093623 scopus 로고    scopus 로고
    • Basic analytical systems for lipidomics by mass spectrometry in Japan
    • Taguchi R, Nishijima M, Shimizu T. Basic analytical systems for lipidomics by mass spectrometry in Japan. Methods Enzymol 2007;432:185-211.
    • (2007) Methods Enzymol , vol.432 , pp. 185-211
    • Taguchi, R.1    Nishijima, M.2    Shimizu, T.3
  • 79
    • 74949106308 scopus 로고    scopus 로고
    • Qualitative and quantitative analyses of phospholipids by LC-MS for lipidomics
    • Nakanishi H, Ogiso H, Taguchi R. Qualitative and quantitative analyses of phospholipids by LC-MS for lipidomics. MethodsMol Biol 2009;579:287-313.
    • (2009) Methods Mol Biol , vol.579 , pp. 287-313
    • Nakanishi, H.1    Ogiso, H.2    Taguchi, R.3
  • 80
    • 44949247591 scopus 로고    scopus 로고
    • Separation of cellular nonpolar neutral lipids by normal-phase chromatography and analysis by electrospray ionization mass spectrometry
    • Hutchins PM, Barkley RM, Murphy RC. Separation of cellular nonpolar neutral lipids by normal-phase chromatography and analysis by electrospray ionization mass spectrometry. J LipidRes 2008;49(4):804-13.
    • (2008) J Lipid Res , vol.49 , Issue.4 , pp. 804-813
    • Hutchins, P.M.1    Barkley, R.M.2    Murphy, R.C.3
  • 81
    • 78149356687 scopus 로고    scopus 로고
    • Lipidomics reveals a remarkable diversity of lipids in human plasma
    • Quehenberger O, Armando AM, Brown AH, et al. Lipidomics reveals a remarkable diversity of lipids in human plasma. J Lipid Res 2010;51(11):3299-305.
    • (2010) J Lipid Res , vol.51 , Issue.11 , pp. 3299-3305
    • Quehenberger, O.1    Armando, A.M.2    Brown, A.H.3
  • 82
    • 77956813485 scopus 로고    scopus 로고
    • Subcellular organelle lipidomics in TLR-4-activated macrophages
    • Andreyev AY, Fahy E, Guan Z, et al. Subcellular organelle lipidomics in TLR-4-activated macrophages. J Lipid Res 2010;51(9):2785-97.
    • (2010) J Lipid Res , vol.51 , Issue.9 , pp. 2785-2797
    • Andreyev, A.Y.1    Fahy, E.2    Guan, Z.3
  • 83
    • 66149192291 scopus 로고    scopus 로고
    • High-resolution extracted ion chromatography, a new tool for metabolomics and lipidomics using a secondgeneration orbitrap mass spectrometer
    • Koulman A, Woffendin G, Narayana VK, et al. High-resolution extracted ion chromatography, a new tool for metabolomics and lipidomics using a secondgeneration orbitrap mass spectrometer. Rapid CommunMass Spectrom 2009;23(10):1411-8.
    • (2009) Rapid Commun Mass Spectrom , vol.23 , Issue.10 , pp. 1411-1418
    • Koulman, A.1    Woffendin, G.2    Narayana, V.K.3
  • 84
    • 66149192289 scopus 로고    scopus 로고
    • Glycerophospholipid profiling by high-performance liquid chromatography/mass spectrometry using exact mass measurements and multi-stage mass spectrometric fragmentation experiments in parallel
    • Hein EM, Blank LM, Heyland J, et al. Glycerophospholipid profiling by high-performance liquid chromatography/mass spectrometry using exact mass measurements and multi-stage mass spectrometric fragmentation experiments in parallel. Rapid Commun Mass Spectrom 2009;23(11): 1636-46.
    • (2009) Rapid Commun Mass Spectrom , vol.23 , Issue.11 , pp. 1636-1646
    • Hein, E.M.1    Blank, L.M.2    Heyland, J.3
  • 85
    • 77953361129 scopus 로고    scopus 로고
    • Precise and global identification of phospholipid molecular species by an Orbitrap mass spectrometer and automated search engine Lipid Search
    • Taguchi R, Ishikawa M. Precise and global identification of phospholipid molecular species by an Orbitrap mass spectrometer and automated search engine Lipid Search. JChromatogrA 2010;1217(25):4229-39.
    • (2010) J Chromatogr A , vol.1217 , Issue.25 , pp. 4229-4239
    • Taguchi, R.1    Ishikawa, M.2
  • 86
    • 81855173653 scopus 로고    scopus 로고
    • A comprehensive method for lipid profiling by liquid chromatographyion cyclotron resonance mass spectrometry
    • Fauland A, Köfeler H, Trötzmüller M, et al. A comprehensive method for lipid profiling by liquid chromatographyion cyclotron resonance mass spectrometry. J Lipid Res 2011;52(12):2314-22.
    • (2011) J Lipid Res , vol.52 , Issue.12 , pp. 2314-2322
    • Fauland, A.1    Köfeler, H.2    Trötzmüller, M.3
  • 87
    • 30744458602 scopus 로고    scopus 로고
    • Ozonolysis of phospholipid double bonds during electrospray ionization: a new tool for structure determination
    • Thomas MC, Mitchell TW, Blanksby SJ. Ozonolysis of phospholipid double bonds during electrospray ionization: a new tool for structure determination. JAmChemSoc 2006; 128(1):58-9.
    • (2006) J Am Chem Soc , vol.128 , Issue.1 , pp. 58-59
    • Thomas, M.C.1    Mitchell, T.W.2    Blanksby, S.J.3
  • 88
    • 34447304918 scopus 로고    scopus 로고
    • Elucidation of double bond position in unsaturated lipids by ozone electrospray ionization mass spectrometry
    • Thomas MC, Mitchell TW, Harman DG, et al. Elucidation of double bond position in unsaturated lipids by ozone electrospray ionization mass spectrometry. Anal Chem 2007;79(13):5013-22.
    • (2007) Anal Chem , vol.79 , Issue.13 , pp. 5013-5022
    • Thomas, M.C.1    Mitchell, T.W.2    Harman, D.G.3
  • 89
    • 41149158131 scopus 로고    scopus 로고
    • Ozone-induced dissociation: elucidation of double bond position within mass-selected lipid ions
    • Thomas MC, Mitchell TW, Harman DG, et al. Ozone-induced dissociation: elucidation of double bond position within mass-selected lipid ions. Anal Chem 2008; 80(1):303-11.
    • (2008) Anal Chem , vol.80 , Issue.1 , pp. 303-311
    • Thomas, M.C.1    Mitchell, T.W.2    Harman, D.G.3
  • 90
    • 78649529343 scopus 로고    scopus 로고
    • Ozone-induced dissociation on a modified tandem linear ion-trap: observations of different reactivity for isomeric lipids
    • Poad BL, Pham HT, Thomas MC, et al. Ozone-induced dissociation on a modified tandem linear ion-trap: observations of different reactivity for isomeric lipids. JAmSocMass Spectrom 2010;21(12):1989-99.
    • (2010) J Am Soc Mass Spectrom , vol.21 , Issue.12 , pp. 1989-1999
    • Poad, B.L.1    Pham, H.T.2    Thomas, M.C.3
  • 91
    • 0032237938 scopus 로고    scopus 로고
    • Charge-remote fragmentations are energy-dependent processes
    • Cheng C, Pittenauer E, Gross ML. Charge-remote fragmentations are energy-dependent processes. JAm SocMass Spectrom 1998;9(8):840-4.
    • (1998) JAm SocMass Spectrom , vol.9 , Issue.8 , pp. 840-844
    • Cheng, C.1    Pittenauer, E.2    Gross, M.L.3
  • 92
    • 0032531545 scopus 로고    scopus 로고
    • Ccomplete structural elucidation of triacylglycerols by tandem sector mass spectrometry
    • Cheng C, Gross ML, Pittenauer E. Ccomplete structural elucidation of triacylglycerols by tandem sector mass spectrometry. Anal Chem 1998;70(20):4417-26.
    • (1998) Anal Chem , vol.70 , Issue.20 , pp. 4417-4426
    • Cheng, C.1    Gross, M.L.2    Pittenauer, E.3
  • 93
    • 55149117757 scopus 로고    scopus 로고
    • Structural characterization of unsaturated glycerophospholipids by multiple-stage linear ion-trap mass spectrometry with electrospray ionization
    • Hsu FF, Turk J. Structural characterization of unsaturated glycerophospholipids by multiple-stage linear ion-trap mass spectrometry with electrospray ionization. J Am Soc Mass Spectrom 2008;19(11):1681-91.
    • (2008) J Am Soc Mass Spectrom , vol.19 , Issue.11 , pp. 1681-1691
    • Hsu, F.F.1    Turk, J.2
  • 94
    • 77950339312 scopus 로고    scopus 로고
    • Electrospray ionization multiple-stage linear ion-trap mass spectrometry for structural elucidation of triacylglycerols: assignment of fatty acyl groups on the glycerol backbone and location of double bonds
    • Hsu FF, Turk J. Electrospray ionization multiple-stage linear ion-trap mass spectrometry for structural elucidation of triacylglycerols: assignment of fatty acyl groups on the glycerol backbone and location of double bonds. JAm Soc Mass Spectrom 2010;21(4):657-69.
    • (2010) J Am Soc Mass Spectrom , vol.21 , Issue.4 , pp. 657-669
    • Hsu, F.F.1    Turk, J.2
  • 95
    • 79957953905 scopus 로고    scopus 로고
    • Identification and quantitation of unsaturated fatty acid isomers by electrospray ionization tandem mass spectrometry: a shotgun lipidomics approach
    • Yang K, Zhao Z, Gross RW, et al. Identification and quantitation of unsaturated fatty acid isomers by electrospray ionization tandem mass spectrometry: a shotgun lipidomics approach. Anal Chem 2011;83(11):4243-50.
    • (2011) Anal Chem , vol.83 , Issue.11 , pp. 4243-4250
    • Yang, K.1    Zhao, Z.2    Gross, R.W.3
  • 96
    • 85069349557 scopus 로고    scopus 로고
    • Direct analysis of protein ccomplexes using mass spectrometry
    • Link AJ, Eng J, Schieltz DM, et al. Direct analysis of protein ccomplexes using mass spectrometry. Nat Biotechnol 1999;17: 4385-402.
    • (1999) Nat Biotechnol , vol.17 , pp. 4385-4402
    • Link, A.J.1    Eng, J.2    Schieltz, D.M.3
  • 97
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins DN, Pappin DJ, Creasy DM, etal. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 1999;20(18):3551-67.
    • (1999) Electrophoresis , vol.20 , Issue.18 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3
  • 99
    • 3142702204 scopus 로고    scopus 로고
    • TANDEM: matching proteins with tandem mass spectra
    • Craig R, Beavis RC. TANDEM: matching proteins with tandem mass spectra. Bioinformatics 2004;20:1466-7.
    • (2004) Bioinformatics , vol.20 , pp. 1466-1467
    • Craig, R.1    Beavis, R.C.2
  • 100
    • 0041358793 scopus 로고    scopus 로고
    • OLAV: towards high-throughput tandem mass spectrometry data identification
    • Colinge J, Masselot A, Giron M, et al. OLAV: towards high-throughput tandem mass spectrometry data identification. Proteomics 2003;3(8):1454-63.
    • (2003) Proteomics , vol.3 , Issue.8 , pp. 1454-1463
    • Colinge, J.1    Masselot, A.2    Giron, M.3
  • 101
    • 50049096775 scopus 로고    scopus 로고
    • XCMS2: processing tandem mass spectrometry data for metabolite identification and structural characterization
    • Benton HP, Wong DM, Trauger SA, et al. XCMS2: processing tandem mass spectrometry data for metabolite identification and structural characterization. Anal Chem 2008; 80(16):6382-9.
    • (2008) Anal Chem , vol.80 , Issue.16 , pp. 6382-6389
    • Benton, H.P.1    Wong, D.M.2    Trauger, S.A.3
  • 102
    • 32444432587 scopus 로고    scopus 로고
    • METLIN: a metabolite mass spectral database
    • Smith CA, O'Maille G, Want EJ, et al. METLIN: a metabolite mass spectral database. Ther Drug Monit 2005;27(6): 747-51.
    • (2005) Ther Drug Monit , vol.27 , Issue.6 , pp. 747-751
    • Smith, C.A.1    O'Maille, G.2    Want, E.J.3
  • 103
    • 33846088138 scopus 로고    scopus 로고
    • HMDB: the human metabolome database
    • Wishart DS, Tzur D, Knox C, et al. HMDB: the human metabolome database. Nucleic Acids Res 2007;35(Database issue):D521-6.
    • (2007) Nucleic Acids Res , vol.35 , Issue.DATABASE ISSUE
    • Wishart, D.S.1    Tzur, D.2    Knox, C.3
  • 104
    • 58149202163 scopus 로고    scopus 로고
    • HMDB: a knowledgebase for the human metabolome
    • Wishart DS, Knox C, Guo AC, etal. HMDB: a knowledgebase for the human metabolome. Nucleic Acids Res 2009; 37(Database issue):D603-10.
    • (2009) Nucleic Acids Res , vol.37 , Issue.DATABASE ISSUE
    • Wishart, D.S.1    Knox, C.2    Guo, A.C.3
  • 105
    • 1942518914 scopus 로고    scopus 로고
    • Identification of bacteria using tandem mass spectrometry combined with a proteome database and statistical scoring
    • Dworzanski JP, Snyder AP, Chen R, et al. Identification of bacteria using tandem mass spectrometry combined with a proteome database and statistical scoring. Anal Chem 2004; 76(8):2355-66.
    • (2004) Anal Chem , vol.76 , Issue.8 , pp. 2355-2366
    • Dworzanski, J.P.1    Snyder, A.P.2    Chen, R.3
  • 106
    • 77954439868 scopus 로고    scopus 로고
    • MassBank: a public repository for sharing mass spectral data for life sciences
    • Horai H, Arita M, Kanaya S, et al. MassBank: a public repository for sharing mass spectral data for life sciences. JMass Spectrom 2010;45(7):703-14.
    • (2010) JMass Spectrom , vol.45 , Issue.7 , pp. 703-714
    • Horai, H.1    Arita, M.2    Kanaya, S.3
  • 107
    • 0000881748 scopus 로고
    • Optimization and testing of mass spectral library search algorithms for compound identification
    • Stein SE, Scott DR. Optimization and testing of mass spectral library search algorithms for compound identification. JAm SocMass Spectrom 1994;5(9):859-66.
    • (1994) JAm SocMass Spectrom , vol.5 , Issue.9 , pp. 859-866
    • Stein, S.E.1    Scott, D.R.2
  • 108
    • 78651516935 scopus 로고    scopus 로고
    • A novel informatics concept for high-throughput shotgun lipidomics based on the molecular fragmentation query language
    • Herzog R, Schwudke D, Schuhmann K, et al. A novel informatics concept for high-throughput shotgun lipidomics based on the molecular fragmentation query language. Genome Biol 2011;12(1):R8.
    • (2011) Genome Biol , vol.12 , Issue.1
    • Herzog, R.1    Schwudke, D.2    Schuhmann, K.3
  • 109
    • 84878504487 scopus 로고    scopus 로고
    • LipidView.
    • (13 February 2012, date last accessed).
    • LipidView. http://www.absciex.com/products/software/ lipidview-software (13 February 2012, date last accessed).
  • 110
    • 34548687668 scopus 로고    scopus 로고
    • Algorithm for processing raw mass spectrometric data to identify and quantitate ccomplex lipid molecular species in mixtures by data-dependent scanning and fragment ion database searching
    • Song H, Hsu FF, Ladenson J, et al. Algorithm for processing raw mass spectrometric data to identify and quantitate ccomplex lipid molecular species in mixtures by data-dependent scanning and fragment ion database searching. JAmSocMass Spectrom 2007;18(10):1848-58.
    • (2007) JAmSocMass Spectrom , vol.18 , Issue.10 , pp. 1848-1858
    • Song, H.1    Hsu, F.F.2    Ladenson, J.3
  • 111
    • 17244377704 scopus 로고    scopus 로고
    • Shotgun lipidomics: multidimensional MS analysis of cellular lipidomes
    • Han X, Gross RW. Shotgun lipidomics: multidimensional MS analysis of cellular lipidomes. ExpertRevProteomics 2005; 2(2):253-64.
    • (2005) ExpertRevProteomics , vol.2 , Issue.2 , pp. 253-264
    • Han, X.1    Gross, R.W.2
  • 112
    • 66349116161 scopus 로고    scopus 로고
    • Automated lipid identification and quantification by multidimensional mass spectrometry-based shotgun lipidomics
    • Yang K, Cheng H, Gross RW, et al. Automated lipid identification and quantification by multidimensional mass spectrometry-based shotgun lipidomics. Anal Chem 2009; 81(11):4356-68.
    • (2009) Anal Chem , vol.81 , Issue.11 , pp. 4356-4368
    • Yang, K.1    Cheng, H.2    Gross, R.W.3
  • 113
    • 84855855094 scopus 로고    scopus 로고
    • LipidXplorer: a software for consensual cross-platform lipidomics
    • Herzog R, Schuhmann K, Schwudke D, etal. LipidXplorer: a software for consensual cross-platform lipidomics. PLoS One 2012;7(1):e29851.
    • (2012) PLoS One , vol.7 , Issue.1
    • Herzog, R.1    Schuhmann, K.2    Schwudke, D.3
  • 114
    • 76949085843 scopus 로고    scopus 로고
    • Separation and quantification of sn-1 and sn-2 fatty acid positional isomers in phosphatidylcholine by RPLC-ESIMS/MS
    • Nakanishi H, Iida Y, Shimizu T, et al. Separation and quantification of sn-1 and sn-2 fatty acid positional isomers in phosphatidylcholine by RPLC-ESIMS/MS. JBiochem 2010; 147(2):245-56.
    • (2010) JBiochem , vol.147 , Issue.2 , pp. 245-256
    • Nakanishi, H.1    Iida, Y.2    Shimizu, T.3
  • 115
    • 77954475755 scopus 로고    scopus 로고
    • Software tool for mining liquid chromatography/multi-stage mass spectrometry data for comprehensive glycerophospholipid profiling
    • Hein EM, Bodeker B, Nolte J, et al. Software tool for mining liquid chromatography/multi-stage mass spectrometry data for comprehensive glycerophospholipid profiling. Rapid Commun Mass Spectrom 2010;24(14): 2083-92.
    • (2010) Rapid Commun Mass Spectrom , vol.24 , Issue.14 , pp. 2083-2092
    • Hein, E.M.1    Bodeker, B.2    Nolte, J.3
  • 116
    • 77954772536 scopus 로고    scopus 로고
    • MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
    • Pluskal T, Castillo S, Villar-Briones A, et al. MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data. BMC Bioinformatics 2010;11:395.
    • (2010) BMC Bioinformatics , vol.11 , pp. 395
    • Pluskal, T.1    Castillo, S.2    Villar-Briones, A.3
  • 117
    • 79951541434 scopus 로고    scopus 로고
    • Lipid Data Analyzer: unattended identification and quantitation of lipids in LC-MS data
    • Hartler J, Trötzmuller M, Chitraju C, et al. Lipid Data Analyzer: unattended identification and quantitation of lipids in LC-MS data. Bioinformatics 2011;27(4):572-7.
    • (2011) Bioinformatics , vol.27 , Issue.4 , pp. 572-577
    • Hartler, J.1    Trötzmuller, M.2    Chitraju, C.3
  • 118
    • 84878511315 scopus 로고    scopus 로고
    • LIPID MAPS.
    • (22 February 2012, date last accessed).
    • LIPID MAPS. http://www.lipidmaps.org (22 February 2012, date last accessed).
  • 119
    • 20444419500 scopus 로고    scopus 로고
    • A comprehensive classification system for lipids
    • Fahy E, Subramaniam S, Brown HA, et al. A comprehensive classification system for lipids. J Lipid Res 2005;46(5): 839-61.
    • (2005) J Lipid Res , vol.46 , Issue.5 , pp. 839-861
    • Fahy, E.1    Subramaniam, S.2    Brown, H.A.3
  • 120
    • 66349098682 scopus 로고    scopus 로고
    • Update of the LIPID MAPS comprehensive classification system for lipids
    • Fahy E, Subramaniam S, Murphy RC, et al. Update of the LIPID MAPS comprehensive classification system for lipids. J LipidRes 2009;50(Suppl):S9-14.
    • (2009) J LipidRes , vol.50 , Issue.SUPPL
    • Fahy, E.1    Subramaniam, S.2    Murphy, R.C.3
  • 121
    • 33846058198 scopus 로고    scopus 로고
    • LMSD: LIPID MAPS structure database
    • Sud M, Fahy E, Cotter D, etal. LMSD: LIPID MAPS structure database. Nucleic Acids Res 2007;35(Database issue): D527-32.
    • (2007) Nucleic Acids Res , vol.35 , Issue.DATABASE ISSUE
    • Sud, M.1    Fahy, E.2    Cotter, D.3
  • 124
    • 0031966808 scopus 로고    scopus 로고
    • Reconstruction of amino acid biosynthesis pathways from the ccomplete genome sequence
    • Bono H, Ogata H, Goto S, et al. Reconstruction of amino acid biosynthesis pathways from the ccomplete genome sequence. Genome Res 1998;8(3):203-10.
    • (1998) Genome Res , vol.8 , Issue.3 , pp. 203-210
    • Bono, H.1    Ogata, H.2    Goto, S.3
  • 125
    • 84885838418 scopus 로고    scopus 로고
    • ChemSpider
    • (28 February 2012, date last accessed).
    • ChemSpider. http://www.chemspider.com (28 February 2012, date last accessed).
  • 126
    • 84878494516 scopus 로고    scopus 로고
    • LipidBank
    • (22 February 2012, date last accessed).
    • LipidBank. http://www.lipidbank.jp (22 February 2012, date last accessed).
  • 127
    • 33750529276 scopus 로고    scopus 로고
    • Lipid Library
    • (22 February 2012, date last accessed).
    • Lipid Library. http://lipidlibrary.aocs.org (22 February 2012, date last accessed).
  • 128
    • 84874724188 scopus 로고    scopus 로고
    • Cyberlipid Center
    • (22 February 2012, date last accessed).
    • Cyberlipid Center. http://www.cyberlipid.org (22 February 2012, date last accessed).
  • 129
    • 84878481947 scopus 로고    scopus 로고
    • Caffrey Labs
    • (22 February 2012, date last accessed).
    • Caffrey Labs. http://www.caffreylabs.tcd.ie (22 February 2012, date last accessed).
  • 130
    • 84878519094 scopus 로고    scopus 로고
    • LIPIDAT
    • (22 February 2012, date last accessed).
    • LIPIDAT. http://www.lipidat.tcd.ie (22 February 2012, date last accessed).
  • 131
    • 84878504636 scopus 로고    scopus 로고
    • LIPIDAG
    • (22 February 2012, date last accessed).
    • LIPIDAG. http://www.lipidag.tcd.ie (22 February 2012, date last accessed).
  • 132
    • 84878509320 scopus 로고    scopus 로고
    • LMSD
    • (22 February 2012, date last accessed).
    • LMSD. http://www.lmsd.tcd.ie (22 February 2012, date last accessed).


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.