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Volumn 108, Issue 1, 2011, Pages 23-32

Algorithms and tools for the preprocessing of LC-MS metabolomics data

Author keywords

Biological data; Data preprocessing software; Liquid chromatography coupled with mass spectrometry (LC MS); Metabolomics

Indexed keywords

ALGORITHM; ARTICLE; AUTOMATION; BIOINFORMATICS; COMPUTER PROGRAM; INFORMATION PROCESSING; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; METABOLOMICS; PATTERN RECOGNITION; PRIORITY JOURNAL; SIGNAL NOISE RATIO;

EID: 79960144635     PISSN: 01697439     EISSN: 18733239     Source Type: Journal    
DOI: 10.1016/j.chemolab.2011.03.010     Document Type: Article
Times cited : (138)

References (87)
  • 5
    • 42649138228 scopus 로고    scopus 로고
    • Probing genetic algorithms for feature selection in comprehensive metabolic profiling approach
    • Zou W., Tolstikov V.V. Probing genetic algorithms for feature selection in comprehensive metabolic profiling approach. Rapid Commun. Mass Spectrom. 2008, 22:1312-1324.
    • (2008) Rapid Commun. Mass Spectrom. , vol.22 , pp. 1312-1324
    • Zou, W.1    Tolstikov, V.V.2
  • 6
    • 25444526868 scopus 로고    scopus 로고
    • Processing methods for differential analysis of LC/MS profile data
    • Katajamaa M., Orešič M. Processing methods for differential analysis of LC/MS profile data. BMC Bioinform. 2005, 6:179.
    • (2005) BMC Bioinform. , vol.6 , pp. 179
    • Katajamaa, M.1    Orešič, M.2
  • 7
    • 33750600611 scopus 로고    scopus 로고
    • Proteome informatics I: bioinformatics tools for processing experimental data
    • Palagi P.M., Hernandez P., Walther D., Appel R.D. Proteome informatics I: bioinformatics tools for processing experimental data. Proteomics 2006, 6:5435-5444.
    • (2006) Proteomics , vol.6 , pp. 5435-5444
    • Palagi, P.M.1    Hernandez, P.2    Walther, D.3    Appel, R.D.4
  • 9
    • 79960119955 scopus 로고    scopus 로고
    • Existing bioinformatics tools for the quantitation of post-translational modifications
    • Allmer J. Existing bioinformatics tools for the quantitation of post-translational modifications. Amino Acids 2010.
    • (2010) Amino Acids
    • Allmer, J.1
  • 10
    • 34347405493 scopus 로고    scopus 로고
    • Data processing for mass spectrometry-based metabolomics
    • Katajamaa M., Orešič M. Data processing for mass spectrometry-based metabolomics. J. Chromatogr. A 2007, 1158:318-328.
    • (2007) J. Chromatogr. A , vol.1158 , pp. 318-328
    • Katajamaa, M.1    Orešič, M.2
  • 11
    • 23044512070 scopus 로고    scopus 로고
    • A comparative evaluation of software for the analysis of liquid chromatography-tandem mass spectrometry data from isotope coded affinity tag experiments
    • Moulder R., Filén J.-J., Salmi J., Katajamaa M., Nevalainen O.S., Orešič M., Aittokallio T., Lahesmaa R., Nyman T.A. A comparative evaluation of software for the analysis of liquid chromatography-tandem mass spectrometry data from isotope coded affinity tag experiments. Proteomics 2005, 5:2748-2760.
    • (2005) Proteomics , vol.5 , pp. 2748-2760
    • Moulder, R.1    Filén, J.-J.2    Salmi, J.3    Katajamaa, M.4    Nevalainen, O.S.5    Orešič, M.6    Aittokallio, T.7    Lahesmaa, R.8    Nyman, T.A.9
  • 12
    • 40549107755 scopus 로고    scopus 로고
    • Comparative LC-MS: a landscape of peaks and valleys
    • America A.H.P., Cordewener J.H.G. Comparative LC-MS: a landscape of peaks and valleys. Proteomics 2008, 8:731-749.
    • (2008) Proteomics , vol.8 , pp. 731-749
    • America, A.H.P.1    Cordewener, J.H.G.2
  • 13
    • 64149104094 scopus 로고    scopus 로고
    • Technical, bioinformatical and statistical aspects of liquid chromatography-mass spectrometry (LC-MS) and capillary electrophoresis-mass spectrometry (CE-MS) based clinical proteomics: a critical assessment
    • Dakna M., He Z., Yu W.C., Mischak H., Kolch W. Technical, bioinformatical and statistical aspects of liquid chromatography-mass spectrometry (LC-MS) and capillary electrophoresis-mass spectrometry (CE-MS) based clinical proteomics: a critical assessment. J Chromatogr B Analyt Technol Biomed Life Sci 2009, 877:1250-1258.
    • (2009) J Chromatogr B Analyt Technol Biomed Life Sci , vol.877 , pp. 1250-1258
    • Dakna, M.1    He, Z.2    Yu, W.C.3    Mischak, H.4    Kolch, W.5
  • 14
    • 38649095599 scopus 로고    scopus 로고
    • An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data
    • Mueller L.N., Brusniak M.-Y., Mani D.R., Aebersold R. An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data. J. Proteome Res. 2008, 7:51-61.
    • (2008) J. Proteome Res. , vol.7 , pp. 51-61
    • Mueller, L.N.1    Brusniak, M.-Y.2    Mani, D.R.3    Aebersold, R.4
  • 15
    • 54349106196 scopus 로고    scopus 로고
    • Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements
    • Lange E., Tautenhahn R., Neumann S., Gröpl C. Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements. BMC Bioinform. 2008, 9:375.
    • (2008) BMC Bioinform. , vol.9 , pp. 375
    • Lange, E.1    Tautenhahn, R.2    Neumann, S.3    Gröpl, C.4
  • 17
    • 60649089559 scopus 로고    scopus 로고
    • Highly sensitive feature detection for high resolution LC/MS
    • Tautenhahn R., Böttcher C., Neumann S. Highly sensitive feature detection for high resolution LC/MS. BMC Bioinform. 2008, 9:504.
    • (2008) BMC Bioinform. , vol.9 , pp. 504
    • Tautenhahn, R.1    Böttcher, C.2    Neumann, S.3
  • 18
    • 67650733222 scopus 로고    scopus 로고
    • ApLCMS-adaptive processing of high-resolution LC/MS data
    • Yu T., Park Y., Johnson J.M., Jones D.P. apLCMS-adaptive processing of high-resolution LC/MS data. Bioinformatics 2009, 25:1930-1936.
    • (2009) Bioinformatics , vol.25 , pp. 1930-1936
    • Yu, T.1    Park, Y.2    Johnson, J.M.3    Jones, D.P.4
  • 19
    • 62149121444 scopus 로고    scopus 로고
    • Decon2LS: an open-source software package for automated processing and visualization of high resolution mass spectrometry data
    • Jaitly N., Mayampurath A., Littlefield K., Adkins J.N., Anderson G.A., Smith R.D. Decon2LS: an open-source software package for automated processing and visualization of high resolution mass spectrometry data. BMC Bioinform. 2009, 10:87.
    • (2009) BMC Bioinform. , vol.10 , pp. 87
    • Jaitly, N.1    Mayampurath, A.2    Littlefield, K.3    Adkins, J.N.4    Anderson, G.A.5    Smith, R.D.6
  • 21
    • 78649695759 scopus 로고    scopus 로고
    • Metabolomic analysis and visualization engine for LC-MS data
    • Melamud E., Vastag L., Rabinowitz J.D. Metabolomic analysis and visualization engine for LC-MS data. Anal. Chem. 2010, 82:9818-9826.
    • (2010) Anal. Chem. , vol.82 , pp. 9818-9826
    • Melamud, E.1    Vastag, L.2    Rabinowitz, J.D.3
  • 22
    • 65249132985 scopus 로고    scopus 로고
    • Metalign: interface-driven, versatile metabolomics tool for hyphenated full-scan mass spectrometry data preprocessing
    • Lommen A. Metalign: interface-driven, versatile metabolomics tool for hyphenated full-scan mass spectrometry data preprocessing. Anal. Chem. 2009, 81:3079-3086.
    • (2009) Anal. Chem. , vol.81 , pp. 3079-3086
    • Lommen, A.1
  • 23
    • 67849106535 scopus 로고    scopus 로고
    • MetaboAnalyst: a web server for metabolomic data analysis and interpretation
    • Xia J., Psychogios N., Young N., Wishart D.S. MetaboAnalyst: a web server for metabolomic data analysis and interpretation. Nucleic Acids Res. 2009, 37:W652-W660.
    • (2009) Nucleic Acids Res. , vol.37
    • Xia, J.1    Psychogios, N.2    Young, N.3    Wishart, D.S.4
  • 25
    • 68949163674 scopus 로고    scopus 로고
    • Metabolite signal identification in accurate mass metabolomics data with MZedDB, an interactive m/z annotation tool utilising predicted ionisation behaviour 'rules'
    • Draper J., Enot D.P., Parker D., Beckmann M., Snowdon S., Lin W., Zubair H. Metabolite signal identification in accurate mass metabolomics data with MZedDB, an interactive m/z annotation tool utilising predicted ionisation behaviour 'rules'. BMC Bioinform. 2009, 10:227.
    • (2009) BMC Bioinform. , vol.10 , pp. 227
    • Draper, J.1    Enot, D.P.2    Parker, D.3    Beckmann, M.4    Snowdon, S.5    Lin, W.6    Zubair, H.7
  • 26
    • 77954772536 scopus 로고    scopus 로고
    • MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
    • Pluskal T., Castillo S., Villar-Briones A., Orešič M. MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data. BMC Bioinform. 2010, 11:395.
    • (2010) BMC Bioinform. , vol.11 , pp. 395
    • Pluskal, T.1    Castillo, S.2    Villar-Briones, A.3    Orešič, M.4
  • 29
    • 67650388499 scopus 로고    scopus 로고
    • TOPPView: an open-source viewer for mass spectrometry data
    • Sturm M., Kohlbacher O. TOPPView: an open-source viewer for mass spectrometry data. J. Proteome Res. 2009, 8:3760-3763.
    • (2009) J. Proteome Res. , vol.8 , pp. 3760-3763
    • Sturm, M.1    Kohlbacher, O.2
  • 30
    • 77449106982 scopus 로고    scopus 로고
    • OpenMS and TOPP: open source software for LC-MS data analysis
    • Reinert K., Kohlbacher O. OpenMS and TOPP: open source software for LC-MS data analysis. Methods Mol Biol 2010, 604:201-211.
    • (2010) Methods Mol Biol , vol.604 , pp. 201-211
    • Reinert, K.1    Kohlbacher, O.2
  • 31
    • 58349086772 scopus 로고    scopus 로고
    • SIRIUS: decomposing isotope patterns for metabolite identification
    • Böcker S., Letzel M.C., Lipták Z., Pervukhin A. SIRIUS: decomposing isotope patterns for metabolite identification. Bioinformatics 2009, 25:218-224.
    • (2009) Bioinformatics , vol.25 , pp. 218-224
    • Böcker, S.1    Letzel, M.C.2    Lipták, Z.3    Pervukhin, A.4
  • 33
    • 32444446805 scopus 로고    scopus 로고
    • XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification
    • Smith C.A., Want E.J., O'Maille G., Abagyan R., Siuzdak G. XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification. Anal. Chem. 2006, 78:779-787.
    • (2006) Anal. Chem. , vol.78 , pp. 779-787
    • Smith, C.A.1    Want, E.J.2    O'Maille, G.3    Abagyan, R.4    Siuzdak, G.5
  • 35
    • 33745728711 scopus 로고    scopus 로고
    • MET-IDEA: data extraction tool for mass spectrometry-based metabolomics
    • Broeckling C.D., Reddy I.R., Duran A.L., Zhao X., Sumner L.W. MET-IDEA: data extraction tool for mass spectrometry-based metabolomics. Anal. Chem. 2006, 78:4334-4341.
    • (2006) Anal. Chem. , vol.78 , pp. 4334-4341
    • Broeckling, C.D.1    Reddy, I.R.2    Duran, A.L.3    Zhao, X.4    Sumner, L.W.5
  • 36
    • 79951480123 scopus 로고    scopus 로고
    • R Foundation for Statistical Computing, Vienna, Austria, Development Core Team R.
    • Development Core Team R. R: A Language and Environment for Statistical Computing 2010, R Foundation for Statistical Computing, Vienna, Austria.
    • (2010) R: A Language and Environment for Statistical Computing
  • 37
    • 38949165153 scopus 로고    scopus 로고
    • 'R'-project for statistical computing
    • Dessau R.B., Pipper C.B. "R"-project for statistical computing. Ugeskr. Laeger 2008, 170:328-330.
    • (2008) Ugeskr. Laeger , vol.170 , pp. 328-330
    • Dessau, R.B.1    Pipper, C.B.2
  • 40
    • 77449138761 scopus 로고    scopus 로고
    • Mass spectrometer output file format mzML
    • Deutsch E.W. Mass spectrometer output file format mzML. Methods Mol Biol 2010, 604:319-331.
    • (2010) Methods Mol Biol , vol.604 , pp. 319-331
    • Deutsch, E.W.1
  • 41
    • 48949104656 scopus 로고    scopus 로고
    • MzML: a single, unifying data format for mass spectrometer output
    • Deutsch E. mzML: a single, unifying data format for mass spectrometer output. Proteomics 2008, 8:2776-2777.
    • (2008) Proteomics , vol.8 , pp. 2776-2777
    • Deutsch, E.1
  • 42
    • 77449122863 scopus 로고    scopus 로고
    • Trans-proteomic pipeline: a pipeline for proteomic analysis
    • Pedrioli P.G.A. Trans-proteomic pipeline: a pipeline for proteomic analysis. Methods Mol Biol 2010, 604:213-238.
    • (2010) Methods Mol Biol , vol.604 , pp. 213-238
    • Pedrioli, P.G.A.1
  • 43
    • 54949129419 scopus 로고    scopus 로고
    • ProteoWizard: open source software for rapid proteomics tools development
    • Kessner D., Chambers M., Burke R., Agus D., Mallick P. ProteoWizard: open source software for rapid proteomics tools development. Bioinformatics 2008, 24:2534-2536.
    • (2008) Bioinformatics , vol.24 , pp. 2534-2536
    • Kessner, D.1    Chambers, M.2    Burke, R.3    Agus, D.4    Mallick, P.5
  • 44
    • 33751423110 scopus 로고    scopus 로고
    • Use and abuse of chemometrics in chromatography
    • Daszykowski M., Walczak B. Use and abuse of chemometrics in chromatography. Trends Analyt Chem 2006, 25:1081-1096.
    • (2006) Trends Analyt Chem , vol.25 , pp. 1081-1096
    • Daszykowski, M.1    Walczak, B.2
  • 45
    • 0034582319 scopus 로고    scopus 로고
    • Automated reduction and interpretation of high resolution electrospray mass spectra of large molecules
    • Horn D.M., Zubarev R.A., McLafferty F.W. Automated reduction and interpretation of high resolution electrospray mass spectra of large molecules. J. Am. Soc. Mass Spectrom. 2000, 11:320-332.
    • (2000) J. Am. Soc. Mass Spectrom. , vol.11 , pp. 320-332
    • Horn, D.M.1    Zubarev, R.A.2    McLafferty, F.W.3
  • 46
    • 34548136221 scopus 로고    scopus 로고
    • VIPER: an advanced software package to support high-throughput LC-MS peptide identification
    • Monroe M.E., Tolić N., Jaitly N., Shaw J.L., Adkins J.N., Smith R.D. VIPER: an advanced software package to support high-throughput LC-MS peptide identification. Bioinformatics 2007, 23:2021-2023.
    • (2007) Bioinformatics , vol.23 , pp. 2021-2023
    • Monroe, M.E.1    Tolić, N.2    Jaitly, N.3    Shaw, J.L.4    Adkins, J.N.5    Smith, R.D.6
  • 48
    • 0002319720 scopus 로고
    • Kernel estimation with cross-validation using the fast Fourier transform
    • Silverman B.W. Kernel estimation with cross-validation using the fast Fourier transform. Appl. Stat. 1982, 31:93-99.
    • (1982) Appl. Stat. , vol.31 , pp. 93-99
    • Silverman, B.W.1
  • 49
    • 0001529784 scopus 로고
    • Remarks on some nonparametric estimates of a density function
    • Rosenblatt M. Remarks on some nonparametric estimates of a density function. Ann Math Statist 1956, 27:832-837.
    • (1956) Ann Math Statist , vol.27 , pp. 832-837
    • Rosenblatt, M.1
  • 50
    • 0019574599 scopus 로고
    • Random Sample Consensus: a paradigm for model fitting with applications to image analysis and automated cartography
    • Fischler M.A., Bolles R.C. Random Sample Consensus: a paradigm for model fitting with applications to image analysis and automated cartography. Commun. ACM 1981, 24:381-395.
    • (1981) Commun. ACM , vol.24 , pp. 381-395
    • Fischler, M.A.1    Bolles, R.C.2
  • 53
    • 27444440684 scopus 로고    scopus 로고
    • Encyclopedia of, Environmetrics
    • Tu W. Zero-Inflated Data 2006, Encyclopedia of, Environmetrics.
    • (2006) Zero-Inflated Data
    • Tu, W.1
  • 55
    • 78650725285 scopus 로고    scopus 로고
    • Computational strategies for metabolite identification in metabolomics
    • Wishart D.S. Computational strategies for metabolite identification in metabolomics. BioAnalysis 2009, 1:1579-1596.
    • (2009) BioAnalysis , vol.1 , pp. 1579-1596
    • Wishart, D.S.1
  • 56
    • 18844406001 scopus 로고    scopus 로고
    • Measuring the metabolome: current analytical technologies
    • Dunn W.B., Bailey N.J.C., Johnson H.E. Measuring the metabolome: current analytical technologies. Analyst 2005, 130:606-625.
    • (2005) Analyst , vol.130 , pp. 606-625
    • Dunn, W.B.1    Bailey, N.J.C.2    Johnson, H.E.3
  • 57
    • 66149192291 scopus 로고    scopus 로고
    • High-resolution extracted ion chromatography, a new tool for metabolomics and lipidomics using a second-generation orbitrap mass spectrometer
    • Koulman A., Woffendin G., Narayana V.K., Welchman H., Crone C., Volmer D.A. High-resolution extracted ion chromatography, a new tool for metabolomics and lipidomics using a second-generation orbitrap mass spectrometer. Rapid Commun. Mass Spectrom. 2009, 23:1411-1418.
    • (2009) Rapid Commun. Mass Spectrom. , vol.23 , pp. 1411-1418
    • Koulman, A.1    Woffendin, G.2    Narayana, V.K.3    Welchman, H.4    Crone, C.5    Volmer, D.A.6
  • 58
    • 14744300520 scopus 로고    scopus 로고
    • Metabolomics applications of FT-ICR mass spectrometry
    • Brown S.C., Kruppa G., Dasseux J.-L. Metabolomics applications of FT-ICR mass spectrometry. Mass Spectrom. Rev. 2005, 24:223-231.
    • (2005) Mass Spectrom. Rev. , vol.24 , pp. 223-231
    • Brown, S.C.1    Kruppa, G.2    Dasseux, J.-L.3
  • 66
    • 50149091296 scopus 로고    scopus 로고
    • DrugBank and its relevance to pharmacogenomics
    • Wishart D.S. DrugBank and its relevance to pharmacogenomics. Pharmacogenomics 2008, 9:1155-1162.
    • (2008) Pharmacogenomics , vol.9 , pp. 1155-1162
    • Wishart, D.S.1
  • 67
    • 46749093781 scopus 로고    scopus 로고
    • Towards a universal product ion mass spectral library-reproducibility of product ion spectra across eleven different mass spectrometers
    • Hopley C., Bristow T., Lubben A., Simpson A., Bull E., Klagkou K., Herniman J., Langley J. Towards a universal product ion mass spectral library-reproducibility of product ion spectra across eleven different mass spectrometers. Rapid Commun. Mass Spectrom. 2008, 22:1779-1786.
    • (2008) Rapid Commun. Mass Spectrom. , vol.22 , pp. 1779-1786
    • Hopley, C.1    Bristow, T.2    Lubben, A.3    Simpson, A.4    Bull, E.5    Klagkou, K.6    Herniman, J.7    Langley, J.8
  • 68
    • 0026603429 scopus 로고
    • LIPIDAT: a database of lipid phase transition temperatures and enthalpy changes. DMPC data subset analysis.
    • Caffrey M., Hogan J. LIPIDAT: a database of lipid phase transition temperatures and enthalpy changes. DMPC data subset analysis. Chem. Phys. Lipids 1992, 61:1-109.
    • (1992) Chem. Phys. Lipids , vol.61 , pp. 1-109
    • Caffrey, M.1    Hogan, J.2
  • 69
    • 70449436059 scopus 로고    scopus 로고
    • Assessment of metabolome annotation quality: a method for evaluating the false discovery rate of elemental composition searches
    • Matsuda F., Shinbo Y., Oikawa A., Hirai M.Y., Fiehn O., Kanaya S., Saito K. Assessment of metabolome annotation quality: a method for evaluating the false discovery rate of elemental composition searches. PLoS ONE 2009, 4:e7490.
    • (2009) PLoS ONE , vol.4
    • Matsuda, F.1    Shinbo, Y.2    Oikawa, A.3    Hirai, M.Y.4    Fiehn, O.5    Kanaya, S.6    Saito, K.7
  • 70
    • 67849104638 scopus 로고    scopus 로고
    • PubChem: a public information system for analyzing bioactivities of small molecules
    • Wang Y., Xiao J., Suzek T.O., Zhang J., Wang J., Bryant S.H. PubChem: a public information system for analyzing bioactivities of small molecules. Nucleic Acids Res. 2009, 37:W623-W633.
    • (2009) Nucleic Acids Res. , vol.37
    • Wang, Y.1    Xiao, J.2    Suzek, T.O.3    Zhang, J.4    Wang, J.5    Bryant, S.H.6
  • 73
    • 33646754900 scopus 로고    scopus 로고
    • Metabolomic database annotations via query of elemental compositions: mass accuracy is insufficient even at less than 1ppm
    • Kind T., Fiehn O. Metabolomic database annotations via query of elemental compositions: mass accuracy is insufficient even at less than 1ppm. BMC Bioinform. 2006, 7:234.
    • (2006) BMC Bioinform. , vol.7 , pp. 234
    • Kind, T.1    Fiehn, O.2
  • 74
    • 34247163207 scopus 로고    scopus 로고
    • Seven golden rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry
    • Kind T., Fiehn O. Seven golden rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry. BMC Bioinform. 2007, 8:105.
    • (2007) BMC Bioinform. , vol.8 , pp. 105
    • Kind, T.1    Fiehn, O.2
  • 75
    • 49049121462 scopus 로고    scopus 로고
    • Mass spectral metabonomics beyond elemental formula: chemical database querying by matching experimental with computational fragmentation spectra
    • Hill D.W., Kertesz T.M., Fontaine D., Friedman R., Grant D.F. Mass spectral metabonomics beyond elemental formula: chemical database querying by matching experimental with computational fragmentation spectra. Anal. Chem. 2008, 80:5574-5582.
    • (2008) Anal. Chem. , vol.80 , pp. 5574-5582
    • Hill, D.W.1    Kertesz, T.M.2    Fontaine, D.3    Friedman, R.4    Grant, D.F.5
  • 78
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
    • Yang Y.H., Dudoit S., Luu P., Lin D.M., Peng V., Ngai J., Speed T.P. Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res. 2002, 30:e15.
    • (2002) Nucleic Acids Res. , vol.30
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Lin, D.M.4    Peng, V.5    Ngai, J.6    Speed, T.P.7
  • 81
    • 67449147120 scopus 로고    scopus 로고
    • Parameter selection for peak alignment in chromatographic sample profiling: objective quality indicators and use of control samples
    • Peters S., van Velzen E., Janssen H.-G. Parameter selection for peak alignment in chromatographic sample profiling: objective quality indicators and use of control samples. Anal. Bioanal. Chem. 2009, 394:1273-1281.
    • (2009) Anal. Bioanal. Chem. , vol.394 , pp. 1273-1281
    • Peters, S.1    van Velzen, E.2    Janssen, H.-G.3
  • 82
    • 78649841522 scopus 로고    scopus 로고
    • Comparative evaluation of software for retention time alignment of gas chromatography/time-of-flight mass spectrometry-based metabonomic data
    • Koh Y., Pasikanti K.K., Yap C.W., Chan E.C.Y. Comparative evaluation of software for retention time alignment of gas chromatography/time-of-flight mass spectrometry-based metabonomic data. J. Chromatogr. A 2010, 1217:8308-8316.
    • (2010) J. Chromatogr. A , vol.1217 , pp. 8308-8316
    • Koh, Y.1    Pasikanti, K.K.2    Yap, C.W.3    Chan, E.C.Y.4
  • 83
    • 79960109564 scopus 로고    scopus 로고
    • Proteomecommons.org tranche hash: X19bvFk4 + SVz0ngXab4YQ + Qu389r/SBAOev1Kh2f5bNyxDnvYiOQhqmU0r + rIknzgCsg8SNWWJVWt1hURkA + eoea8MAAAAAAABm9w==
    • Proteomecommons.org tranche hash: X19bvFk4 + SVz0ngXab4YQ + Qu389r/SBAOev1Kh2f5bNyxDnvYiOQhqmU0r + rIknzgCsg8SNWWJVWt1hURkA + eoea8MAAAAAAABm9w==, 2010.
    • (2010)
  • 85
    • 0344737959 scopus 로고    scopus 로고
    • Automated statistical analysis of protein abundance ratios from data generated by stable-isotope dilution and tandem mass spectrometry
    • Li X.-J., Zhang H., Ranish J.A., Aebersold R. Automated statistical analysis of protein abundance ratios from data generated by stable-isotope dilution and tandem mass spectrometry. Anal. Chem. 2003, 75:6648-6657.
    • (2003) Anal. Chem. , vol.75 , pp. 6648-6657
    • Li, X.-J.1    Zhang, H.2    Ranish, J.A.3    Aebersold, R.4
  • 86
    • 26844492976 scopus 로고    scopus 로고
    • A software suite for the generation and comparison of peptide arrays from sets of data collected by liquid chromatography-mass spectrometry
    • Li X.-J., Yi E.C., Kemp C.J., Zhang H., Aebersold R. A software suite for the generation and comparison of peptide arrays from sets of data collected by liquid chromatography-mass spectrometry. Mol Cell Proteomics 2005, 4(9):1328-1340.
    • (2005) Mol Cell Proteomics , vol.4 , Issue.9 , pp. 1328-1340
    • Li, X.-J.1    Yi, E.C.2    Kemp, C.J.3    Zhang, H.4    Aebersold, R.5
  • 87
    • 27744448038 scopus 로고    scopus 로고
    • Data pre-processing in liquid chromatography-mass spectrometry-based proteomics
    • Zhang X., Asara J.M., Adamec J., Ouzzani M., Elmagarmid A.K. Data pre-processing in liquid chromatography-mass spectrometry-based proteomics. Anal. Chem. 2005, 21(21):4054-4059.
    • (2005) Anal. Chem. , vol.21 , Issue.21 , pp. 4054-4059
    • Zhang, X.1    Asara, J.M.2    Adamec, J.3    Ouzzani, M.4    Elmagarmid, A.K.5


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