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Volumn 14, Issue 1, 2013, Pages

Arginine68 is an essential residue for the C-terminal cleavage of human Atg8 family proteins

Author keywords

Alternative splicing; Atg8; Autophagy; MAP1LC3B

Indexed keywords

4 AMINOBUTYRIC ACID A RECEPTOR ASSOCIATED PROTEIN; 4 AMINOBUTYRIC ACID A RECEPTOR ASSOCIATED PROTEIN LIKE 1; ARGININE; AUTOPHAGY PROTEIN 8; MEMBRANE PROTEIN; MESSENGER RNA; MICROTUBULE ASSOCIATED PROTEIN 1 LIGHT CHAIN 3BETA; UNCLASSIFIED DRUG; ACTIN BINDING PROTEIN; GABARAPL2 PROTEIN, HUMAN; ISOPROTEIN; MAP1LC3B PROTEIN, HUMAN; MICROTUBULE ASSOCIATED PROTEIN; SIGNAL TRANSDUCING ADAPTOR PROTEIN;

EID: 84878263360     PISSN: None     EISSN: 14712121     Source Type: Journal    
DOI: 10.1186/1471-2121-14-27     Document Type: Article
Times cited : (17)

References (58)
  • 1
    • 0034537290 scopus 로고    scopus 로고
    • Autophagy as a regulated pathway of cellular degradation
    • Klionsky DJ, Emr SD. Autophagy as a regulated pathway of cellular degradation. Science 2000, 290(5497):1717-1721.
    • (2000) Science , vol.290 , Issue.5497 , pp. 1717-1721
    • Klionsky, D.J.1    Emr, S.D.2
  • 2
    • 77956404377 scopus 로고    scopus 로고
    • Eaten alive: a history of macroautophagy
    • Yang Z, Klionsky DJ. Eaten alive: a history of macroautophagy. Nat Cell Biol 2010, 12(9):814-822.
    • (2010) Nat Cell Biol , vol.12 , Issue.9 , pp. 814-822
    • Yang, Z.1    Klionsky, D.J.2
  • 3
    • 8344242220 scopus 로고    scopus 로고
    • Autophagy in health and disease: A double-edged sword
    • Shintani T, Klionsky DJ. Autophagy in health and disease: A double-edged sword. Science 2004, 306(5698):990-995.
    • (2004) Science , vol.306 , Issue.5698 , pp. 990-995
    • Shintani, T.1    Klionsky, D.J.2
  • 4
    • 65649083316 scopus 로고    scopus 로고
    • Autophagy and ethanol-induced liver injury
    • Donohue TM. Autophagy and ethanol-induced liver injury. World J Gastroenterol 2009, 15(10):1178-1185.
    • (2009) World J Gastroenterol , vol.15 , Issue.10 , pp. 1178-1185
    • Donohue, T.M.1
  • 5
    • 0442274441 scopus 로고    scopus 로고
    • Autophagic vacuolar myopathies
    • Nishino I. Autophagic vacuolar myopathies. Curr Neurol Neurosci Rep 2003, 3(1):64-69.
    • (2003) Curr Neurol Neurosci Rep , vol.3 , Issue.1 , pp. 64-69
    • Nishino, I.1
  • 6
    • 77949881747 scopus 로고    scopus 로고
    • Review: autophagy and neurodegeneration: survival at a cost?
    • Cherra SJ, Dagda RK, Chu CT. Review: autophagy and neurodegeneration: survival at a cost?. Neuropathol Appl Neurobiol 2010, 36(2):125-132.
    • (2010) Neuropathol Appl Neurobiol , vol.36 , Issue.2 , pp. 125-132
    • Cherra, S.J.1    Dagda, R.K.2    Chu, C.T.3
  • 7
    • 75649114258 scopus 로고    scopus 로고
    • Autophagy in immunity against intracellular bacteria
    • Huang J, Brumell JH. Autophagy in immunity against intracellular bacteria. Curr Top Microbiol Immunol 2009, 335:189-215.
    • (2009) Curr Top Microbiol Immunol , vol.335 , pp. 189-215
    • Huang, J.1    Brumell, J.H.2
  • 8
    • 84856687924 scopus 로고    scopus 로고
    • Molecular Machinery of Autophagy and Its Implication in Cancer
    • Li Y, Zhang J, Chen X, Liu T, He W, Chen Y, Zeng X. Molecular Machinery of Autophagy and Its Implication in Cancer. Am J Med Sci 2012, 343:155-161.
    • (2012) Am J Med Sci , vol.343 , pp. 155-161
    • Li, Y.1    Zhang, J.2    Chen, X.3    Liu, T.4    He, W.5    Chen, Y.6    Zeng, X.7
  • 9
    • 34548265278 scopus 로고    scopus 로고
    • Autophagy and human disease
    • Huang J, Klionsky DJ. Autophagy and human disease. Cell Cycle 2007, 6(15):1837-1849.
    • (2007) Cell Cycle , vol.6 , Issue.15 , pp. 1837-1849
    • Huang, J.1    Klionsky, D.J.2
  • 11
    • 77951214016 scopus 로고    scopus 로고
    • Mammalian autophagy: core molecular machinery and signaling regulation
    • Yang Z, Klionsky DJ. Mammalian autophagy: core molecular machinery and signaling regulation. Curr Opin Cell Biol 2010, 22(2):124-131.
    • (2010) Curr Opin Cell Biol , vol.22 , Issue.2 , pp. 124-131
    • Yang, Z.1    Klionsky, D.J.2
  • 12
    • 27644484061 scopus 로고    scopus 로고
    • Autophagy: molecular machinery for self-eating
    • Yorimitsu T, Klionsky DJ. Autophagy: molecular machinery for self-eating. Cell Death Differ 2005, 12(Suppl 2):1542-1552.
    • (2005) Cell Death Differ , vol.12 , Issue.SUPPL. 2 , pp. 1542-1552
    • Yorimitsu, T.1    Klionsky, D.J.2
  • 13
    • 0034676037 scopus 로고    scopus 로고
    • The reversible modification regulates the membrane-binding state of Apg8/Aut7 essential for autophagy and the cytoplasm to vacuole targeting pathway
    • Kirisako T, Ichimura Y, Okada H, Kabeya Y, Mizushima N, Yoshimori T, Ohsumi M, Takao T, Noda T, Ohsumi Y. The reversible modification regulates the membrane-binding state of Apg8/Aut7 essential for autophagy and the cytoplasm to vacuole targeting pathway. J Cell Biol 2000, 151(2):263-276.
    • (2000) J Cell Biol , vol.151 , Issue.2 , pp. 263-276
    • Kirisako, T.1    Ichimura, Y.2    Okada, H.3    Kabeya, Y.4    Mizushima, N.5    Yoshimori, T.6    Ohsumi, M.7    Takao, T.8    Noda, T.9    Ohsumi, Y.10
  • 14
    • 0032896760 scopus 로고    scopus 로고
    • Apg7p/Cvt2p is required for the cytoplasm-to-vacuole targeting, macroautophagy, and peroxisome degradation pathways
    • Kim J, Dalton VM, Eggerton KP, Scott SV, Klionsky DJ. Apg7p/Cvt2p is required for the cytoplasm-to-vacuole targeting, macroautophagy, and peroxisome degradation pathways. Mol Biol Cell 1999, 10(5):1337-1351.
    • (1999) Mol Biol Cell , vol.10 , Issue.5 , pp. 1337-1351
    • Kim, J.1    Dalton, V.M.2    Eggerton, K.P.3    Scott, S.V.4    Klionsky, D.J.5
  • 17
    • 0032545292 scopus 로고    scopus 로고
    • A new protein conjugation system in human
    • Mizushima N, Sugita H, Yoshimori T, Ohsumi Y. A new protein conjugation system in human. J Biol Chem 1998, 273(51):33889-33892.
    • (1998) J Biol Chem , vol.273 , Issue.51 , pp. 33889-33892
    • Mizushima, N.1    Sugita, H.2    Yoshimori, T.3    Ohsumi, Y.4
  • 18
    • 4644362024 scopus 로고    scopus 로고
    • In vivo and in vitro reconstitution of Atg8 conjugation essential for autophagy
    • Ichimura Y, Imamura Y, Emoto K, Umeda M, Noda T, Ohsumi Y. In vivo and in vitro reconstitution of Atg8 conjugation essential for autophagy. J Biol Chem 2004, 279(39):40584-40592.
    • (2004) J Biol Chem , vol.279 , Issue.39 , pp. 40584-40592
    • Ichimura, Y.1    Imamura, Y.2    Emoto, K.3    Umeda, M.4    Noda, T.5    Ohsumi, Y.6
  • 19
    • 33645652024 scopus 로고    scopus 로고
    • Phosphatidylserine in addition to phosphatidylethanolamine is an in vitro target of the mammalian Atg8 modifiers, LC3, GABARAP, and GATE-16
    • Sou YS, Tanida I, Komatsu M, Ueno T, Kominami E. Phosphatidylserine in addition to phosphatidylethanolamine is an in vitro target of the mammalian Atg8 modifiers, LC3, GABARAP, and GATE-16. J Biol Chem 2006, 281(6):3017-3024.
    • (2006) J Biol Chem , vol.281 , Issue.6 , pp. 3017-3024
    • Sou, Y.S.1    Tanida, I.2    Komatsu, M.3    Ueno, T.4    Kominami, E.5
  • 20
    • 34447099450 scopus 로고    scopus 로고
    • Atg8, a ubiquitin-like protein required for autophagosome formation, mediates membrane tethering and hemifusion
    • Nakatogawa H, Ichimura Y, Ohsumi Y. Atg8, a ubiquitin-like protein required for autophagosome formation, mediates membrane tethering and hemifusion. Cell 2007, 130(1):165-178.
    • (2007) Cell , vol.130 , Issue.1 , pp. 165-178
    • Nakatogawa, H.1    Ichimura, Y.2    Ohsumi, Y.3
  • 21
    • 47549092694 scopus 로고    scopus 로고
    • Atg8 controls phagophore expansion during autophagosome formation
    • Xie Z, Nair U, Klionsky DJ. Atg8 controls phagophore expansion during autophagosome formation. Mol Biol Cell 2008, 19(8):3290-3298.
    • (2008) Mol Biol Cell , vol.19 , Issue.8 , pp. 3290-3298
    • Xie, Z.1    Nair, U.2    Klionsky, D.J.3
  • 22
    • 0042206454 scopus 로고    scopus 로고
    • Post-translational modifications of three members of the human MAP1LC3 family and detection of a novel type of modification for MAP1LC3B
    • He H, Dang Y, Dai F, Guo Z, Wu J, She X, Pei Y, Chen Y, Ling W, Wu C, et al. Post-translational modifications of three members of the human MAP1LC3 family and detection of a novel type of modification for MAP1LC3B. J Biol Chem 2003, 278(31):29278-29287.
    • (2003) J Biol Chem , vol.278 , Issue.31 , pp. 29278-29287
    • He, H.1    Dang, Y.2    Dai, F.3    Guo, Z.4    Wu, J.5    She, X.6    Pei, Y.7    Chen, Y.8    Ling, W.9    Wu, C.10
  • 24
    • 3242888703 scopus 로고    scopus 로고
    • LC3, GABARAP and GATE16 localize to autophagosomal membrane depending on form-II formation
    • Kabeya Y, Mizushima N, Yamamoto A, Oshitani-Okamoto S, Ohsumi Y, Yoshimori T. LC3, GABARAP and GATE16 localize to autophagosomal membrane depending on form-II formation. J Cell Sci 2004, 117(13):2805-2812.
    • (2004) J Cell Sci , vol.117 , Issue.13 , pp. 2805-2812
    • Kabeya, Y.1    Mizushima, N.2    Yamamoto, A.3    Oshitani-Okamoto, S.4    Ohsumi, Y.5    Yoshimori, T.6
  • 25
    • 0028289946 scopus 로고
    • Molecular characterization of light chain. Part 3
    • Mann SS, Hammarback JA. Molecular characterization of light chain. Part 3. J Biol Chem 1994, 269(15):11492-11497.
    • (1994) J Biol Chem , vol.269 , Issue.15 , pp. 11492-11497
    • Mann, S.S.1    Hammarback, J.A.2
  • 26
    • 0033531225 scopus 로고    scopus 로고
    • GABAA-receptor-associated protein links GABAA receptors and the cytoskeleton
    • Wang H, Bedford FK, Brandon NJ, Moss SJ, Olsen RW. GABAA-receptor-associated protein links GABAA receptors and the cytoskeleton. Nature 1999, 397:69-72.
    • (1999) Nature , vol.397 , pp. 69-72
    • Wang, H.1    Bedford, F.K.2    Brandon, N.J.3    Moss, S.J.4    Olsen, R.W.5
  • 27
    • 33646690504 scopus 로고    scopus 로고
    • Atg8L/Apg8L is the fourth mammalian modifier of mammalian Atg8 conjugation mediated by human Atg4B, Atg7 and Atg3
    • Tanida I, Sou YS, Minematsu-Ikeguchi N, Ueno T, Kominami E. Atg8L/Apg8L is the fourth mammalian modifier of mammalian Atg8 conjugation mediated by human Atg4B, Atg7 and Atg3. FEBS J 2006, 273(11):2553-2562.
    • (2006) FEBS J , vol.273 , Issue.11 , pp. 2553-2562
    • Tanida, I.1    Sou, Y.S.2    Minematsu-Ikeguchi, N.3    Ueno, T.4    Kominami, E.5
  • 28
    • 0001417555 scopus 로고    scopus 로고
    • GATE-16, a membrane transport modulator, interacts with NSF and the Golgi v-SNARE GOS-28
    • Sagiv Y, Legesse-Miller A, Porat A, Elazar Z. GATE-16, a membrane transport modulator, interacts with NSF and the Golgi v-SNARE GOS-28. EMBO J 2000, 19:1494-1504.
    • (2000) EMBO J , vol.19 , pp. 1494-1504
    • Sagiv, Y.1    Legesse-Miller, A.2    Porat, A.3    Elazar, Z.4
  • 29
    • 0347695019 scopus 로고    scopus 로고
    • A single protease, Apg4B, is specific for the autophagy-related ubiquitin-like proteins GATE-16, MAP1-LC3, GABARAP, and Apg8L
    • Hemelaar J, Lelyveld VS, Kessler BM, Ploegh HL. A single protease, Apg4B, is specific for the autophagy-related ubiquitin-like proteins GATE-16, MAP1-LC3, GABARAP, and Apg8L. J Biol Chem 2003, 278(51):51841-51850.
    • (2003) J Biol Chem , vol.278 , Issue.51 , pp. 51841-51850
    • Hemelaar, J.1    Lelyveld, V.S.2    Kessler, B.M.3    Ploegh, H.L.4
  • 30
    • 0037134443 scopus 로고    scopus 로고
    • Human Apg3p/Aut1p homologue is an authentic E2 enzyme for multiple substrates, GATE-16, GABARAP, and MAP-LC3, and facilitates the conjugation of hApg12p to hApg5p
    • Tanida I, Tanida-Miyake E, Komatsu M, Ueno T, Kominami E. Human Apg3p/Aut1p homologue is an authentic E2 enzyme for multiple substrates, GATE-16, GABARAP, and MAP-LC3, and facilitates the conjugation of hApg12p to hApg5p. J Biol Chem 2002, 277(16):13739-13744.
    • (2002) J Biol Chem , vol.277 , Issue.16 , pp. 13739-13744
    • Tanida, I.1    Tanida-Miyake, E.2    Komatsu, M.3    Ueno, T.4    Kominami, E.5
  • 31
    • 33646690504 scopus 로고    scopus 로고
    • Atg8L/Apg8L is the fourth mammalian modifier of mammalian Atg8 conjugation mediated by human Atg4B, Atg7 and Atg3
    • Tanida I, Sou Y, Minematsu-Ikeguchi N, Ueno T, Kominami E. Atg8L/Apg8L is the fourth mammalian modifier of mammalian Atg8 conjugation mediated by human Atg4B, Atg7 and Atg3. FEBS J 2006, 273(11):2553-2562.
    • (2006) FEBS J , vol.273 , Issue.11 , pp. 2553-2562
    • Tanida, I.1    Sou, Y.2    Minematsu-Ikeguchi, N.3    Ueno, T.4    Kominami, E.5
  • 32
    • 9644278038 scopus 로고    scopus 로고
    • Widespread occurrence of alternative splicing at NAGNAG acceptors contributes to proteome plasticity
    • Hiller M, Huse K, Szafranski K, Jahn N, Hampe J, Schreiber S, Backofen R, Platzer M. Widespread occurrence of alternative splicing at NAGNAG acceptors contributes to proteome plasticity. Nat Genet 2004, 36(12):1255-1257.
    • (2004) Nat Genet , vol.36 , Issue.12 , pp. 1255-1257
    • Hiller, M.1    Huse, K.2    Szafranski, K.3    Jahn, N.4    Hampe, J.5    Schreiber, S.6    Backofen, R.7    Platzer, M.8
  • 33
    • 0036337915 scopus 로고    scopus 로고
    • A genomic view of alternative splicing
    • Modrek B, Lee C. A genomic view of alternative splicing. Nat Genet 2002, 30(1):13-19.
    • (2002) Nat Genet , vol.30 , Issue.1 , pp. 13-19
    • Modrek, B.1    Lee, C.2
  • 35
    • 9144224360 scopus 로고    scopus 로고
    • Human light chain 3/MAP1LC3B is cleaved at its carboxyl-terminal Met121 to expose Gly120 for lipidation and targeting to autophagosomal membranes
    • Tanida I, Ueno T, Kominami E. Human light chain 3/MAP1LC3B is cleaved at its carboxyl-terminal Met121 to expose Gly120 for lipidation and targeting to autophagosomal membranes. J Biol Chem 2004, 279(46):47704-47710.
    • (2004) J Biol Chem , vol.279 , Issue.46 , pp. 47704-47710
    • Tanida, I.1    Ueno, T.2    Kominami, E.3
  • 38
    • 4344696843 scopus 로고    scopus 로고
    • The crystal structure of microtubule-associated protein light chain 3, a mammalian homologue of Saccharomyces cerevisiae Atg8
    • Sugawara K, Suzuki NN, Fujioka Y, Mizushima N, Ohsumi Y, Inagaki F. The crystal structure of microtubule-associated protein light chain 3, a mammalian homologue of Saccharomyces cerevisiae Atg8. Genes Cells 2004, 9(7):611-618.
    • (2004) Genes Cells , vol.9 , Issue.7 , pp. 611-618
    • Sugawara, K.1    Suzuki, N.N.2    Fujioka, Y.3    Mizushima, N.4    Ohsumi, Y.5    Inagaki, F.6
  • 39
    • 0037012104 scopus 로고    scopus 로고
    • Structure of GABARAP in two conformations: implications for GABA(A) receptor localization and tubulin binding
    • Coyle JE, Qamar S, Rajashankar KR, Nikolov DB. Structure of GABARAP in two conformations: implications for GABA(A) receptor localization and tubulin binding. Neuron 2002, 33(1):63-74.
    • (2002) Neuron , vol.33 , Issue.1 , pp. 63-74
    • Coyle, J.E.1    Qamar, S.2    Rajashankar, K.R.3    Nikolov, D.B.4
  • 41
    • 0034682843 scopus 로고    scopus 로고
    • Structure of GATE-16, membrane transport modulator and mammalian ortholog of autophagocytosis factor Aut7p
    • Paz Y, Elazar Z, Fass D. Structure of GATE-16, membrane transport modulator and mammalian ortholog of autophagocytosis factor Aut7p. J Biol Chem 2000, 275(33):25445-25450.
    • (2000) J Biol Chem , vol.275 , Issue.33 , pp. 25445-25450
    • Paz, Y.1    Elazar, Z.2    Fass, D.3
  • 43
    • 0013394889 scopus 로고    scopus 로고
    • Mechanisms of alternative pre-messenger RNA splicing
    • Black DL. Mechanisms of alternative pre-messenger RNA splicing. Annu Rev Biochem 2003, 72:291-336.
    • (2003) Annu Rev Biochem , vol.72 , pp. 291-336
    • Black, D.L.1
  • 44
    • 0028244050 scopus 로고
    • Two alternatively spliced forms of the human insulin-like growth factor I receptor have distinct biological activities and internalization kinetics
    • Condorelli GBR, Smith RJ. Two alternatively spliced forms of the human insulin-like growth factor I receptor have distinct biological activities and internalization kinetics. J Biol Chem 1994, 269(11):8510-8516.
    • (1994) J Biol Chem , vol.269 , Issue.11 , pp. 8510-8516
    • Condorelli, G.B.R.1    Smith, R.J.2
  • 45
    • 25444516516 scopus 로고    scopus 로고
    • Frequent occurrence of protein isoforms with or without a single amino acid residue by subtle alternative splicing: the case of Gln in DRPLA affects subcellular localization of the products
    • Tadokoro KY-IM, Tachibana M, Fujishiro M, Nagao K, Toyoda M, Ozaki M, Ono M, Miki N, Miyashita T, Yamada M. Frequent occurrence of protein isoforms with or without a single amino acid residue by subtle alternative splicing: the case of Gln in DRPLA affects subcellular localization of the products. J Hum Genet 2005, 50:382-394.
    • (2005) J Hum Genet , vol.50 , pp. 382-394
    • Tadokoro, K.Y.-I.M.1    Tachibana, M.2    Fujishiro, M.3    Nagao, K.4    Toyoda, M.5    Ozaki, M.6    Ono, M.7    Miki, N.8    Miyashita, T.9    Yamada, M.10
  • 46
    • 0029860454 scopus 로고    scopus 로고
    • An alternative splicing event in the Pax-3 paired domain identifies the linker region as a key determinant of paired domain DNA-binding activity
    • Vogan KJ, Underhill DA, Gros P. An alternative splicing event in the Pax-3 paired domain identifies the linker region as a key determinant of paired domain DNA-binding activity. Mol Cell Biol 1996, 16(12):6677-6686.
    • (1996) Mol Cell Biol , vol.16 , Issue.12 , pp. 6677-6686
    • Vogan, K.J.1    Underhill, D.A.2    Gros, P.3
  • 47
    • 22244432192 scopus 로고    scopus 로고
    • Evolutionary conservation of minor U12-type spliceosome between plants and humans
    • Lorkovic ZJ, Lehner R, Forstner C, Barta A. Evolutionary conservation of minor U12-type spliceosome between plants and humans. RNA 2005, 11(7):1095-1107.
    • (2005) RNA , vol.11 , Issue.7 , pp. 1095-1107
    • Lorkovic, Z.J.1    Lehner, R.2    Forstner, C.3    Barta, A.4
  • 49
    • 33744830333 scopus 로고    scopus 로고
    • Two newly identified sites in the ubiquitin-like protein Atg8 are essential for autophagy
    • Amar N, Lustig G, Ichimura Y, Ohsumi Y, Elazar Z. Two newly identified sites in the ubiquitin-like protein Atg8 are essential for autophagy. EMBO Rep 2006, 7(6):635-642.
    • (2006) EMBO Rep , vol.7 , Issue.6 , pp. 635-642
    • Amar, N.1    Lustig, G.2    Ichimura, Y.3    Ohsumi, Y.4    Elazar, Z.5
  • 50
    • 33846196301 scopus 로고    scopus 로고
    • Identification of essential residues for the C-terminal cleavage of the mammalian LC3: a lesson from yeast Atg8
    • Fass E, Amar N, Elazar Z. Identification of essential residues for the C-terminal cleavage of the mammalian LC3: a lesson from yeast Atg8. Autophagy 2007, 3(1):48.
    • (2007) Autophagy , vol.3 , Issue.1 , pp. 48
    • Fass, E.1    Amar, N.2    Elazar, Z.3
  • 51
    • 1042289660 scopus 로고    scopus 로고
    • Allele-specific amplification of exon 7 in the survival motor neuron (SMN) genes for molecular diagnosis of spinal muscular atrophy
    • Simsek M, Al-Bulushi T, Shanmugakonar M, Al-Barwani HS, Bayoumi R. Allele-specific amplification of exon 7 in the survival motor neuron (SMN) genes for molecular diagnosis of spinal muscular atrophy. Genet Test 2003, 7(4):325-327.
    • (2003) Genet Test , vol.7 , Issue.4 , pp. 325-327
    • Simsek, M.1    Al-Bulushi, T.2    Shanmugakonar, M.3    Al-Barwani, H.S.4    Bayoumi, R.5
  • 52
    • 0042622380 scopus 로고    scopus 로고
    • SWISS-MODEL: An automated protein homology-modeling server
    • Schwede T, Kopp J, Guex N, Peitsch MC. SWISS-MODEL: An automated protein homology-modeling server. Nucleic Acids Res 2003, 31(13):3381-3385.
    • (2003) Nucleic Acids Res , vol.31 , Issue.13 , pp. 3381-3385
    • Schwede, T.1    Kopp, J.2    Guex, N.3    Peitsch, M.C.4
  • 53
    • 0035913529 scopus 로고    scopus 로고
    • Evaluation and reparametrization of the OPLS-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides
    • Kaminski G, Friesner RA, Tirado-Rives J, Jorgensen WL. Evaluation and reparametrization of the OPLS-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides. J Phys Chem B 2001, 105(28):6474-6487.
    • (2001) J Phys Chem B , vol.105 , Issue.28 , pp. 6474-6487
    • Kaminski, G.1    Friesner, R.A.2    Tirado-Rives, J.3    Jorgensen, W.L.4
  • 55
    • 0029633168 scopus 로고
    • GROMACS: A message-passing parallel molecular dynamics implementation
    • Berendsen HJC, van der Spoel D, van Drunen R. GROMACS: A message-passing parallel molecular dynamics implementation. Comp Phys Comm 1995, 91:43-56.
    • (1995) Comp Phys Comm , vol.91 , pp. 43-56
    • Berendsen, H.J.C.1    van der Spoel, D.2    van Drunen, R.3
  • 56
    • 0035789518 scopus 로고    scopus 로고
    • GROMACS 3.0: a package for molecular simulation and trajectory analysis
    • Lindahl E, Hess B, van der Spoel D. GROMACS 3.0: a package for molecular simulation and trajectory analysis. J Mol Model 2001, 7:306-317.
    • (2001) J Mol Model , vol.7 , pp. 306-317
    • Lindahl, E.1    Hess, B.2    van der Spoel, D.3
  • 58
    • 0003845223 scopus 로고    scopus 로고
    • The PyMOL Molecular Graphics System
    • San Carlos, CA: DeLano Scientific LLC
    • DeLano WL. The PyMOL Molecular Graphics System. 2004, San Carlos, CA: DeLano Scientific LLC.
    • (2004)
    • DeLano, W.L.1


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