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Volumn 93, Issue 3, 2009, Pages 213-220

ASTD: The Alternative Splicing and Transcript Diversity database

(29)  Koscielny, Gautier a   Texier, Vincent Le a   Gopalakrishnan, Chellappa a   Kumanduri, Vasudev a   Riethoven, Jean Jack a   Nardone, Francesco a   Stanley, Eleanor a   Fallsehr, Christine f   Hofmann, Oliver c   Kull, Meelis d,e   Harrington, Eoghan f   Boué, Stéphanie f   Eyras, Eduardo g   Plass, Mireya g   Lopez, Fabrice h   Ritchie, William h   Moucadel, Virginie h   Ara, Takeshi h   Pospisil, Heike i   Herrmann, Alexander j   more..


Author keywords

Alternative initiation; Alternative polyadenylation; Alternative splicing; Alternative transcription

Indexed keywords

ALTERNATIVE RNA SPLICING; ARTICLE; CONTROLLED STUDY; GENOME ANALYSIS; HUMAN; MOUSE; NONHUMAN; POLYADENYLATION; PRIORITY JOURNAL; RAT; REFERENCE DATABASE; TRANSCRIPTION INITIATION;

EID: 60049093585     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2008.11.003     Document Type: Article
Times cited : (81)

References (37)
  • 1
    • 34250369629 scopus 로고    scopus 로고
    • Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions
    • Denoeud F., et al. Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions. Genome Res. 17 (2007) 746-759
    • (2007) Genome Res. , vol.17 , pp. 746-759
    • Denoeud, F.1
  • 2
    • 34248368920 scopus 로고    scopus 로고
    • The implications of alternative splicing in the ENCODE protein complement
    • Tress M.L., et al. The implications of alternative splicing in the ENCODE protein complement. Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 5495-5500
    • (2007) Proc. Natl. Acad. Sci. U. S. A. , vol.104 , pp. 5495-5500
    • Tress, M.L.1
  • 3
    • 33846059244 scopus 로고    scopus 로고
    • PolyA_DB 2: mRNA polyadenylation sites in vertebrate genes
    • Lee J.Y., Yeh I., Park J.Y., and Tian B. PolyA_DB 2: mRNA polyadenylation sites in vertebrate genes. Nucleic Acids Res. 35 (2007) D165-D168
    • (2007) Nucleic Acids Res. , vol.35
    • Lee, J.Y.1    Yeh, I.2    Park, J.Y.3    Tian, B.4
  • 4
    • 33746927884 scopus 로고    scopus 로고
    • The connection between splicing and cancer
    • Srebrow A., and Kornblihtt A.R. The connection between splicing and cancer. J. Cell. Sci. 119 (2006) 2635-2641
    • (2006) J. Cell. Sci. , vol.119 , pp. 2635-2641
    • Srebrow, A.1    Kornblihtt, A.R.2
  • 5
    • 33846036722 scopus 로고    scopus 로고
    • The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species
    • Kim N., Alekseyenko A.V., Roy M., and Lee C. The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species. Nucleic Acids Res. 35 (2007) D93-D98
    • (2007) Nucleic Acids Res. , vol.35
    • Kim, N.1    Alekseyenko, A.V.2    Roy, M.3    Lee, C.4
  • 6
    • 33846039709 scopus 로고    scopus 로고
    • ECgene: an alternative splicing database update
    • Lee Y., et al. ECgene: an alternative splicing database update. Nucleic Acids Res. 35 (2007) D99-D103
    • (2007) Nucleic Acids Res. , vol.35
    • Lee, Y.1
  • 7
    • 33644877169 scopus 로고    scopus 로고
    • HOLLYWOOD: a comparative relational database of alternative splicing
    • Holste D., Huo G., Tung V., and Burge C.B. HOLLYWOOD: a comparative relational database of alternative splicing. Nucleic Acids Res. 34 (2006) D56-D62
    • (2006) Nucleic Acids Res. , vol.34
    • Holste, D.1    Huo, G.2    Tung, V.3    Burge, C.B.4
  • 8
    • 33846075227 scopus 로고    scopus 로고
    • H-DBAS: alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational
    • Takeda J., et al. H-DBAS: alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational. Nucleic Acids Res. 35 (2007) D104-D109
    • (2007) Nucleic Acids Res. , vol.35
    • Takeda, J.1
  • 9
    • 23044503321 scopus 로고    scopus 로고
    • FAST DB: a website resource for the study of the expression regulation of human gene products
    • de la Grange P., Dutertre M., Martin N., and Auboeuf D. FAST DB: a website resource for the study of the expression regulation of human gene products. Nucleic Acids Res. 33 (2005) 4276-4284
    • (2005) Nucleic Acids Res. , vol.33 , pp. 4276-4284
    • de la Grange, P.1    Dutertre, M.2    Martin, N.3    Auboeuf, D.4
  • 10
    • 24644519490 scopus 로고    scopus 로고
    • The transcriptional landscape of the mammalian genome
    • Carninci P., et al. The transcriptional landscape of the mammalian genome. Science 309 (2005) 1559-1563
    • (2005) Science , vol.309 , pp. 1559-1563
    • Carninci, P.1
  • 11
    • 33644878582 scopus 로고    scopus 로고
    • ASD: a bioinformatics resource on alternative splicing
    • Stamm S., et al. ASD: a bioinformatics resource on alternative splicing. Nucleic Acids Res. 34 (2006) D46-D55
    • (2006) Nucleic Acids Res. , vol.34
    • Stamm, S.1
  • 12
    • 33645808501 scopus 로고    scopus 로고
    • AltTrans: transcript pattern variants annotated for both alternative splicing and alternative polyadenylation
    • Le Texier V., et al. AltTrans: transcript pattern variants annotated for both alternative splicing and alternative polyadenylation. BMC Bioinformatics 7 (2006) 169
    • (2006) BMC Bioinformatics , vol.7 , pp. 169
    • Le Texier, V.1
  • 13
    • 33749257983 scopus 로고    scopus 로고
    • The disparate nature of "intergenic" polyadenylation sites
    • Lopez F., Granjeaud S., Ara T., Ghattas B., and Gautheret D. The disparate nature of "intergenic" polyadenylation sites. RNA 12 (2006) 1794-1801
    • (2006) RNA , vol.12 , pp. 1794-1801
    • Lopez, F.1    Granjeaud, S.2    Ara, T.3    Ghattas, B.4    Gautheret, D.5
  • 15
    • 0346124413 scopus 로고    scopus 로고
    • Autoregulation of polypyrimidine tract binding protein by alternative splicing leading to nonsense-mediated decay
    • Wollerton M.C., Gooding C., Wagner E.J., Garcia-Blanco M.A., and Smith C.W. Autoregulation of polypyrimidine tract binding protein by alternative splicing leading to nonsense-mediated decay. Mol. Cell. 13 (2004) 91-100
    • (2004) Mol. Cell. , vol.13 , pp. 91-100
    • Wollerton, M.C.1    Gooding, C.2    Wagner, E.J.3    Garcia-Blanco, M.A.4    Smith, C.W.5
  • 16
    • 0037327027 scopus 로고    scopus 로고
    • A novel algorithm for computational identification of contaminated EST libraries
    • Sorek R., and Safer H.M. A novel algorithm for computational identification of contaminated EST libraries. Nucleic Acids Res. 31 (2003) 1067-1074
    • (2003) Nucleic Acids Res. , vol.31 , pp. 1067-1074
    • Sorek, R.1    Safer, H.M.2
  • 17
    • 9144258614 scopus 로고    scopus 로고
    • Strengths and weaknesses of EST-based prediction of tissue-specific alternative splicing
    • Gupta S., Zink D., Korn B., Vingron M., and Haas S.A. Strengths and weaknesses of EST-based prediction of tissue-specific alternative splicing. BMC Genomics 5 (2004) 72
    • (2004) BMC Genomics , vol.5 , pp. 72
    • Gupta, S.1    Zink, D.2    Korn, B.3    Vingron, M.4    Haas, S.A.5
  • 18
    • 0037310045 scopus 로고    scopus 로고
    • Computational analysis and experimental validation of tumor-associated alternative RNA splicing in human cancer
    • Wang Z., et al. Computational analysis and experimental validation of tumor-associated alternative RNA splicing in human cancer. Cancer Res. 63 (2003) 655-657
    • (2003) Cancer Res. , vol.63 , pp. 655-657
    • Wang, Z.1
  • 19
    • 0141974926 scopus 로고    scopus 로고
    • Discovery of novel splice forms and functional analysis of cancer-specific alternative splicing in human expressed sequences
    • Xu Q., and Lee C. Discovery of novel splice forms and functional analysis of cancer-specific alternative splicing in human expressed sequences. Nucleic Acids Res. 31 (2003) 5635-5643
    • (2003) Nucleic Acids Res. , vol.31 , pp. 5635-5643
    • Xu, Q.1    Lee, C.2
  • 20
    • 2442551589 scopus 로고    scopus 로고
    • Identification of alternatively spliced mRNA variants related to cancers by genome-wide ESTs alignment
    • Hui L., et al. Identification of alternatively spliced mRNA variants related to cancers by genome-wide ESTs alignment. Oncogene 23 (2004) 3013-3023
    • (2004) Oncogene , vol.23 , pp. 3013-3023
    • Hui, L.1
  • 21
    • 33646950851 scopus 로고    scopus 로고
    • Biased alternative polyadenylation in human tissues
    • Zhang H., Lee J.Y., and Tian B. Biased alternative polyadenylation in human tissues. Genome Biol. 6 (2005) R100
    • (2005) Genome Biol. , vol.6
    • Zhang, H.1    Lee, J.Y.2    Tian, B.3
  • 23
    • 0038817774 scopus 로고    scopus 로고
    • eVOC: a controlled vocabulary for unifying gene expression data
    • Kelso J., et al. eVOC: a controlled vocabulary for unifying gene expression data. Genome Res. 13 (2003) 1222-1230
    • (2003) Genome Res. , vol.13 , pp. 1222-1230
    • Kelso, J.1
  • 24
    • 34247863985 scopus 로고    scopus 로고
    • Beyond the 3′ end: experimental validation of extended transcript isoforms
    • Moucadel V., Lopez F., Ara T., Benech P., and Gautheret D. Beyond the 3′ end: experimental validation of extended transcript isoforms. Nucleic Acids Res. 35 (2007) 1947-1957
    • (2007) Nucleic Acids Res. , vol.35 , pp. 1947-1957
    • Moucadel, V.1    Lopez, F.2    Ara, T.3    Benech, P.4    Gautheret, D.5
  • 25
    • 0345865005 scopus 로고    scopus 로고
    • ASD: the Alternative Splicing Database
    • Thanaraj T.A., et al. ASD: the Alternative Splicing Database. Nucleic Acids Res. 32 (2004) D64-D69
    • (2004) Nucleic Acids Res. , vol.32
    • Thanaraj, T.A.1
  • 27
    • 4344623260 scopus 로고    scopus 로고
    • Integrative annotation of 21,037 human genes validated by full-length cDNA clones
    • Imanishi T., et al. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. PLoS Biol. 2 (2004) e162
    • (2004) PLoS Biol. , vol.2
    • Imanishi, T.1
  • 28
    • 0034834248 scopus 로고    scopus 로고
    • Identification of alternate polyadenylation sites and analysis of their tissue distribution using EST data
    • Beaudoing E., and Gautheret D. Identification of alternate polyadenylation sites and analysis of their tissue distribution using EST data. Genome Res. 9 (2001) 1520-1526
    • (2001) Genome Res. , vol.9 , pp. 1520-1526
    • Beaudoing, E.1    Gautheret, D.2
  • 29
    • 30044442791 scopus 로고    scopus 로고
    • Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes
    • Kimura K., et al. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Genome Res. 16 (2006) 55-65
    • (2006) Genome Res. , vol.16 , pp. 55-65
    • Kimura, K.1
  • 30
    • 33644874185 scopus 로고    scopus 로고
    • DBTSS: DataBase of human transcription start sites, progress report 2006
    • Yamashita R., et al. DBTSS: DataBase of human transcription start sites, progress report 2006. Nucleic Acids Res. 34 (2006) D86-D89
    • (2006) Nucleic Acids Res. , vol.34
    • Yamashita, R.1
  • 33
    • 0037705467 scopus 로고    scopus 로고
    • Conservation of human alternative splice events in mouse
    • Thanaraj T.A., Clark F., and Muilu J. Conservation of human alternative splice events in mouse. Nucleic Acids Res. 31 (2003) 2544-2552
    • (2003) Nucleic Acids Res. , vol.31 , pp. 2544-2552
    • Thanaraj, T.A.1    Clark, F.2    Muilu, J.3
  • 35
    • 33846116032 scopus 로고    scopus 로고
    • New developments in the InterPro database
    • Mulder N.J., et al. New developments in the InterPro database. Nucleic Acids Res. 35 (2007) D224-D228
    • (2007) Nucleic Acids Res. , vol.35
    • Mulder, N.J.1
  • 36
    • 0742323558 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay: splicing, translation and mRNP dynamics
    • Maquat L.E. Nonsense-mediated mRNA decay: splicing, translation and mRNP dynamics. Nat. Rev. Mol. Cell. Biol. 5 (2004) 89-99
    • (2004) Nat. Rev. Mol. Cell. Biol. , vol.5 , pp. 89-99
    • Maquat, L.E.1
  • 37
    • 34347398567 scopus 로고    scopus 로고
    • Inference of miRNA targets using evolutionary conservation and pathway analysis
    • Gaidatzis D., van Nimwegen E., Hausser J., and Zavolan M. Inference of miRNA targets using evolutionary conservation and pathway analysis. BMC Bioinformatics 8 (2007) 69
    • (2007) BMC Bioinformatics , vol.8 , pp. 69
    • Gaidatzis, D.1    van Nimwegen, E.2    Hausser, J.3    Zavolan, M.4


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