-
1
-
-
84869093362
-
Extensive degradation of RNA precursors by the exosome in wild-type cells
-
Gudipati R.K., Xu Z., Lebreton A., Seraphin B., Steinmetz L.M., Jacquier A., Libri D. Extensive degradation of RNA precursors by the exosome in wild-type cells. Mol. Cell 2012, 409-421.
-
(2012)
Mol. Cell
, pp. 409-421
-
-
Gudipati, R.K.1
Xu, Z.2
Lebreton, A.3
Seraphin, B.4
Steinmetz, L.M.5
Jacquier, A.6
Libri, D.7
-
2
-
-
57749189164
-
Endonucleolytic RNA cleavage by a eukaryotic exosome
-
Lebreton A., Tomecki R., Dziembowski A., Seraphin B. Endonucleolytic RNA cleavage by a eukaryotic exosome. Nature 2008, 456:993-996.
-
(2008)
Nature
, vol.456
, pp. 993-996
-
-
Lebreton, A.1
Tomecki, R.2
Dziembowski, A.3
Seraphin, B.4
-
3
-
-
62049085366
-
The N-terminal PIN domain of the exosome subunit Rrp44 harbors endonuclease activity and tethers Rrp44 to the yeast core exosome
-
Schneider C., Leung E., Brown J., Tollervey D. The N-terminal PIN domain of the exosome subunit Rrp44 harbors endonuclease activity and tethers Rrp44 to the yeast core exosome. Nucleic Acids Res. 2009, 37:1127-1140.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1127-1140
-
-
Schneider, C.1
Leung, E.2
Brown, J.3
Tollervey, D.4
-
4
-
-
58149236691
-
The exosome contains domains with specific endoribonuclease, exoribonuclease and cytoplasmic mRNA decay activities
-
Schaeffer D., Tsanova B., Barbas A., Reis F.P., Dastidar E.G., Sanchez-Rotunno M., Arraiano C.M., van Hoof A. The exosome contains domains with specific endoribonuclease, exoribonuclease and cytoplasmic mRNA decay activities. Nat. Struct. Mol. Biol. 2009, 16:56-62.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 56-62
-
-
Schaeffer, D.1
Tsanova, B.2
Barbas, A.3
Reis, F.P.4
Dastidar, E.G.5
Sanchez-Rotunno, M.6
Arraiano, C.M.7
van Hoof, A.8
-
5
-
-
20444368818
-
RNA degradation by the exosome is promoted by a nuclear polyadenylation complex
-
LaCava J., Houseley J., Saveanu C., Petfalski E., Thompson E., Jacquier A., Tollervey D. RNA degradation by the exosome is promoted by a nuclear polyadenylation complex. Cell 2005, 121:713-724.
-
(2005)
Cell
, vol.121
, pp. 713-724
-
-
LaCava, J.1
Houseley, J.2
Saveanu, C.3
Petfalski, E.4
Thompson, E.5
Jacquier, A.6
Tollervey, D.7
-
6
-
-
22744459614
-
A new yeast poly(A) polymerase complex involved in RNA quality control
-
Vanacova S., Wolf J., Martin G., Blank D., Dettwiler S., Friedlein A., Langen H., Keith G., Keller W. A new yeast poly(A) polymerase complex involved in RNA quality control. PLoS Biol. 2005, 3:e189.
-
(2005)
PLoS Biol.
, vol.3
-
-
Vanacova, S.1
Wolf, J.2
Martin, G.3
Blank, D.4
Dettwiler, S.5
Friedlein, A.6
Langen, H.7
Keith, G.8
Keller, W.9
-
7
-
-
20444368036
-
Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase
-
Wyers F., Rougemaille M., Badis G., Rousselle J.C., Dufour M.E., Boulay J., Regnault B., Devaux F., Namane A., Seraphin B., Libri D., Jacquier A. Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase. Cell 2005, 121:725-737.
-
(2005)
Cell
, vol.121
, pp. 725-737
-
-
Wyers, F.1
Rougemaille, M.2
Badis, G.3
Rousselle, J.C.4
Dufour, M.E.5
Boulay, J.6
Regnault, B.7
Devaux, F.8
Namane, A.9
Seraphin, B.10
Libri, D.11
Jacquier, A.12
-
8
-
-
0142215475
-
Global analysis of protein expression in yeast
-
Ghaemmaghami S., Huh W.K., Bower K., Howson R.W., Belle A., Dephoure N., O'Shea E.K., Weissman J.S. Global analysis of protein expression in yeast. Nature 2003, 425:737-741.
-
(2003)
Nature
, vol.425
, pp. 737-741
-
-
Ghaemmaghami, S.1
Huh, W.K.2
Bower, K.3
Howson, R.W.4
Belle, A.5
Dephoure, N.6
O'Shea, E.K.7
Weissman, J.S.8
-
9
-
-
29844458585
-
Contributions of Trf4p- and Trf5p-dependent polyadenylation to the processing and degradative functions of the yeast nuclear exosome
-
Egecioglu D.E., Henras A.K., Chanfreau G.F. Contributions of Trf4p- and Trf5p-dependent polyadenylation to the processing and degradative functions of the yeast nuclear exosome. RNA 2006, 12:26-32.
-
(2006)
RNA
, vol.12
, pp. 26-32
-
-
Egecioglu, D.E.1
Henras, A.K.2
Chanfreau, G.F.3
-
10
-
-
68249083958
-
Distinct roles of non-canonical poly(A) polymerases in RNA metabolism
-
San Paolo S., Vanacova S., Schenk L., Scherrer T., Blank D., Keller W., Gerber A.P. Distinct roles of non-canonical poly(A) polymerases in RNA metabolism. PLoS Genet. 2009, 5:e1000555.
-
(2009)
PLoS Genet.
, vol.5
-
-
San Paolo, S.1
Vanacova, S.2
Schenk, L.3
Scherrer, T.4
Blank, D.5
Keller, W.6
Gerber, A.P.7
-
11
-
-
84866606784
-
Air proteins control differential TRAMP substrate specificity for nuclear RNA surveillance
-
Schmidt K., Xu Z., Mathews D.H., Butler J.S. Air proteins control differential TRAMP substrate specificity for nuclear RNA surveillance. RNA 2012, 18:1934-1945.
-
(2012)
RNA
, vol.18
, pp. 1934-1945
-
-
Schmidt, K.1
Xu, Z.2
Mathews, D.H.3
Butler, J.S.4
-
12
-
-
35548959608
-
RNA-specific ribonucleotidyl transferases
-
Martin G., Keller W. RNA-specific ribonucleotidyl transferases. RNA 2007, 13:1834-1849.
-
(2007)
RNA
, vol.13
, pp. 1834-1849
-
-
Martin, G.1
Keller, W.2
-
13
-
-
77957014655
-
Structure and function of the polymerase core of TRAMP, a RNA surveillance complex
-
Hamill S., Wolin S.L., Reinisch K.M. Structure and function of the polymerase core of TRAMP, a RNA surveillance complex. Proc. Natl. Acad. Sci. U. S. A. 2010, 107:15045-15050.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 15045-15050
-
-
Hamill, S.1
Wolin, S.L.2
Reinisch, K.M.3
-
14
-
-
80054811443
-
Air1 zinc knuckles 4 and 5 and a conserved IWRXY motif are critical for the function and integrity of the Trf4/5-Air1/2-Mtr4 polyadenylation (TRAMP) RNA quality control complex
-
Fasken M.B., Leung S.W., Banerjee A., Kodani M.O., Chavez R., Bowman E.A., Purohit M.K., Rubinson M.E., Rubinson E.H., Corbett A.H. Air1 zinc knuckles 4 and 5 and a conserved IWRXY motif are critical for the function and integrity of the Trf4/5-Air1/2-Mtr4 polyadenylation (TRAMP) RNA quality control complex. J. Biol. Chem. 2011, 286:37429-37445.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 37429-37445
-
-
Fasken, M.B.1
Leung, S.W.2
Banerjee, A.3
Kodani, M.O.4
Chavez, R.5
Bowman, E.A.6
Purohit, M.K.7
Rubinson, M.E.8
Rubinson, E.H.9
Corbett, A.H.10
-
15
-
-
84863204260
-
Air2p is critical for the assembly and RNA-binding of the TRAMP complex and the KOW domain of Mtr4p is crucial for exosome activation
-
Holub P., Lalakova J., Cerna H., Pasulka J., Sarazova M., Hrazdilova K., Arce M.S., Hobor F., Stefl R., Vanacova S. Air2p is critical for the assembly and RNA-binding of the TRAMP complex and the KOW domain of Mtr4p is crucial for exosome activation. Nucleic Acids Res. 2012, 40:5679-5693.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 5679-5693
-
-
Holub, P.1
Lalakova, J.2
Cerna, H.3
Pasulka, J.4
Sarazova, M.5
Hrazdilova, K.6
Arce, M.S.7
Hobor, F.8
Stefl, R.9
Vanacova, S.10
-
16
-
-
0032481316
-
Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3' end formation of 5.8S rRNA in Saccharomyces cerevisiae
-
de la Cruz J., Kressler D., Tollervey D., Linder P. Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3' end formation of 5.8S rRNA in Saccharomyces cerevisiae. EMBO J. 1998, 17:1128-1140.
-
(1998)
EMBO J.
, vol.17
, pp. 1128-1140
-
-
de la Cruz, J.1
Kressler, D.2
Tollervey, D.3
Linder, P.4
-
17
-
-
0000577868
-
The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex
-
Anderson J.S., Parker R.P. The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex. EMBO J. 1998, 17:1497-1506.
-
(1998)
EMBO J.
, vol.17
, pp. 1497-1506
-
-
Anderson, J.S.1
Parker, R.P.2
-
18
-
-
79958267118
-
The RNA helicase Mtr4p modulates polyadenylation in the TRAMP complex
-
Jia H., Wang X., Liu F., Guenther U.P., Srinivasan S., Anderson J.T., Jankowsky E. The RNA helicase Mtr4p modulates polyadenylation in the TRAMP complex. Cell 2011, 145:890-901.
-
(2011)
Cell
, vol.145
, pp. 890-901
-
-
Jia, H.1
Wang, X.2
Liu, F.3
Guenther, U.P.4
Srinivasan, S.5
Anderson, J.T.6
Jankowsky, E.7
-
19
-
-
79955587252
-
The nuclear RNA polymerase II surveillance system targets polymerase III transcripts
-
Wlotzka W., Kudla G., Granneman S., Tollervey D. The nuclear RNA polymerase II surveillance system targets polymerase III transcripts. EMBO J. 2011, 30:1790-1803.
-
(2011)
EMBO J.
, vol.30
, pp. 1790-1803
-
-
Wlotzka, W.1
Kudla, G.2
Granneman, S.3
Tollervey, D.4
-
20
-
-
41949126822
-
Characterization of the essential activities of Saccharomyces cerevisiae Mtr4p, a 3'→5' helicase partner of the nuclear exosome
-
Bernstein J., Patterson D.N., Wilson G.M., Toth E.A. Characterization of the essential activities of Saccharomyces cerevisiae Mtr4p, a 3'→5' helicase partner of the nuclear exosome. J. Biol. Chem. 2008, 283:4930-4942.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 4930-4942
-
-
Bernstein, J.1
Patterson, D.N.2
Wilson, G.M.3
Toth, E.A.4
-
21
-
-
38049069276
-
Degradation of hypomodified tRNA(iMet) in vivo involves RNA-dependent ATPase activity of the DExH helicase Mtr4p
-
Wang X., Jia H., Jankowsky E., Anderson J.T. Degradation of hypomodified tRNA(iMet) in vivo involves RNA-dependent ATPase activity of the DExH helicase Mtr4p. RNA 2008, 14:107-116.
-
(2008)
RNA
, vol.14
, pp. 107-116
-
-
Wang, X.1
Jia, H.2
Jankowsky, E.3
Anderson, J.T.4
-
22
-
-
84860806396
-
RNA unwinding by the Trf4/Air2/Mtr4 polyadenylation (TRAMP) complex
-
Jia H., Wang X., Anderson J.T., Jankowsky E. RNA unwinding by the Trf4/Air2/Mtr4 polyadenylation (TRAMP) complex. Proc. Natl. Acad. Sci. U. S. A. 2012, 109:7292-7297.
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. 7292-7297
-
-
Jia, H.1
Wang, X.2
Anderson, J.T.3
Jankowsky, E.4
-
23
-
-
78650131655
-
Unique properties of the Mtr4p-poly(A) complex suggest a role in substrate targeting
-
Bernstein J., Ballin J.D., Patterson D.N., Wilson G.M., Toth E.A. Unique properties of the Mtr4p-poly(A) complex suggest a role in substrate targeting. Biochemistry 2010, 49:10357-10370.
-
(2010)
Biochemistry
, vol.49
, pp. 10357-10370
-
-
Bernstein, J.1
Ballin, J.D.2
Patterson, D.N.3
Wilson, G.M.4
Toth, E.A.5
-
24
-
-
33845407784
-
Reconstitution, activities, and structure of the eukaryotic RNA exosome
-
Liu Q., Greimann J.C., Lima C.D. Reconstitution, activities, and structure of the eukaryotic RNA exosome. Cell 2006, 127:1223-1237.
-
(2006)
Cell
, vol.127
, pp. 1223-1237
-
-
Liu, Q.1
Greimann, J.C.2
Lima, C.D.3
-
25
-
-
77950509943
-
TRAMP complex enhances RNA degradation by the nuclear exosome component Rrp6
-
Callahan K.P., Butler J.S. TRAMP complex enhances RNA degradation by the nuclear exosome component Rrp6. J. Biol. Chem. 2010, 285:3540-3547.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 3540-3547
-
-
Callahan, K.P.1
Butler, J.S.2
-
26
-
-
80054759888
-
Transcriptome-wide binding sites for components of the Saccharomyces cerevisiae non-poly(A) termination pathway: Nrd1, Nab3, and Sen1
-
Creamer T.J., Darby M.M., Jamonnak N., Schaughency P., Hao H., Wheelan S.J., Corden J.L. Transcriptome-wide binding sites for components of the Saccharomyces cerevisiae non-poly(A) termination pathway: Nrd1, Nab3, and Sen1. PLoS Genet. 2011, 7:e1002329.
-
(2011)
PLoS Genet.
, vol.7
-
-
Creamer, T.J.1
Darby, M.M.2
Jamonnak, N.3
Schaughency, P.4
Hao, H.5
Wheelan, S.J.6
Corden, J.L.7
-
27
-
-
84867036854
-
In vivo SELEX reveals novel sequence and structural determinants of Nrd1-Nab3-Sen1-dependent transcription termination
-
Porrua O., Hobor F., Boulay J., Kubicek K., D'Aubenton-Carafa Y., Gudipati R.K., Stefl R., Libri D. In vivo SELEX reveals novel sequence and structural determinants of Nrd1-Nab3-Sen1-dependent transcription termination. EMBO J. 2012, 31:3935-3948.
-
(2012)
EMBO J.
, vol.31
, pp. 3935-3948
-
-
Porrua, O.1
Hobor, F.2
Boulay, J.3
Kubicek, K.4
D'Aubenton-Carafa, Y.5
Gudipati, R.K.6
Stefl, R.7
Libri, D.8
-
28
-
-
30744467674
-
Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts
-
Vasiljeva L., Buratowski S. Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts. Mol. Cell 2006, 21:239-248.
-
(2006)
Mol. Cell
, vol.21
, pp. 239-248
-
-
Vasiljeva, L.1
Buratowski, S.2
-
29
-
-
84867167784
-
Cryptic transcription and early termination in the control of gene expression
-
Colin J., Libri D., Porrua O. Cryptic transcription and early termination in the control of gene expression. Genet. Res. Int. 2011, 2011:653494.
-
(2011)
Genet. Res. Int.
, vol.2011
, pp. 653494
-
-
Colin, J.1
Libri, D.2
Porrua, O.3
-
30
-
-
70449953975
-
The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs
-
Jacquier A. The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs. Nat. Rev. Genet. 2009, 10:833-844.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 833-844
-
-
Jacquier, A.1
-
31
-
-
60549114880
-
Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
-
Neil H., Malabat C., d'Aubenton-Carafa Y., Xu Z., Steinmetz L.M., Jacquier A. Widespread bidirectional promoters are the major source of cryptic transcripts in yeast. Nature 2009, 457:1038-1042.
-
(2009)
Nature
, vol.457
, pp. 1038-1042
-
-
Neil, H.1
Malabat, C.2
d'Aubenton-Carafa, Y.3
Xu, Z.4
Steinmetz, L.M.5
Jacquier, A.6
-
32
-
-
60549108380
-
Bidirectional promoters generate pervasive transcription in yeast
-
Xu Z., Wei W., Gagneur J., Perocchi F., Clauder-Munster S., Camblong J., Guffanti E., Stutz F., Huber W., Steinmetz L.M. Bidirectional promoters generate pervasive transcription in yeast. Nature 2009, 457:1033-1037.
-
(2009)
Nature
, vol.457
, pp. 1033-1037
-
-
Xu, Z.1
Wei, W.2
Gagneur, J.3
Perocchi, F.4
Clauder-Munster, S.5
Camblong, J.6
Guffanti, E.7
Stutz, F.8
Huber, W.9
Steinmetz, L.M.10
-
33
-
-
47349099971
-
Regulation of a eukaryotic gene by GTP-dependent start site selection and transcription attenuation
-
Kuehner J.N., Brow D.A. Regulation of a eukaryotic gene by GTP-dependent start site selection and transcription attenuation. Mol. Cell 2008, 31:201-211.
-
(2008)
Mol. Cell
, vol.31
, pp. 201-211
-
-
Kuehner, J.N.1
Brow, D.A.2
-
34
-
-
27744533201
-
Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae
-
Martens J.A., Wu P.Y., Winston F. Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae. Genes Dev. 2005, 19:2695-2704.
-
(2005)
Genes Dev.
, vol.19
, pp. 2695-2704
-
-
Martens, J.A.1
Wu, P.Y.2
Winston, F.3
-
35
-
-
50249183162
-
Futile cycle of transcription initiation and termination modulates the response to nucleotide shortage in S. cerevisiae
-
Thiebaut M., Colin J., Neil H., Jacquier A., Seraphin B., Lacroute F., Libri D. Futile cycle of transcription initiation and termination modulates the response to nucleotide shortage in S. cerevisiae. Mol. Cell 2008, 31:671-682.
-
(2008)
Mol. Cell
, vol.31
, pp. 671-682
-
-
Thiebaut, M.1
Colin, J.2
Neil, H.3
Jacquier, A.4
Seraphin, B.5
Lacroute, F.6
Libri, D.7
-
36
-
-
49449105283
-
Phosphorylation of the RNA polymerase II C-terminal domain dictates transcription termination choice
-
Gudipati R.K., Villa T., Boulay J., Libri D. Phosphorylation of the RNA polymerase II C-terminal domain dictates transcription termination choice. Nat. Struct. Mol. Biol. 2008, 15:786-794.
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 786-794
-
-
Gudipati, R.K.1
Villa, T.2
Boulay, J.3
Libri, D.4
-
37
-
-
70449641057
-
Progression through the RNA polymerase II CTD cycle
-
Buratowski S. Progression through the RNA polymerase II CTD cycle. Mol. Cell 2009, 36:541-546.
-
(2009)
Mol. Cell
, vol.36
, pp. 541-546
-
-
Buratowski, S.1
-
38
-
-
84865845346
-
Serine phosphorylation and proline isomerization in RNAP II CTD control recruitment of Nrd1
-
Kubicek K., Cerna H., Holub P., Pasulka J., Hrossova D., Loehr F., Hofr C., Vanacova S., Stefl R. Serine phosphorylation and proline isomerization in RNAP II CTD control recruitment of Nrd1. Genes Dev. 2012, 26:1891-1896.
-
(2012)
Genes Dev.
, vol.26
, pp. 1891-1896
-
-
Kubicek, K.1
Cerna, H.2
Holub, P.3
Pasulka, J.4
Hrossova, D.5
Loehr, F.6
Hofr, C.7
Vanacova, S.8
Stefl, R.9
-
39
-
-
84862977456
-
CTD tyrosine phosphorylation impairs termination factor recruitment to RNA polymerase II
-
Mayer A., Heidemann M., Lidschreiber M., Schreieck A., Sun M., Hintermair C., Kremmer E., Eick D., Cramer P. CTD tyrosine phosphorylation impairs termination factor recruitment to RNA polymerase II. Science 2012, 336:1723-1725.
-
(2012)
Science
, vol.336
, pp. 1723-1725
-
-
Mayer, A.1
Heidemann, M.2
Lidschreiber, M.3
Schreieck, A.4
Sun, M.5
Hintermair, C.6
Kremmer, E.7
Eick, D.8
Cramer, P.9
-
40
-
-
49449110180
-
The Nrd1-Nab3-Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain
-
Vasiljeva L., Kim M., Mutschler H., Buratowski S., Meinhart A. The Nrd1-Nab3-Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain. Nat. Struct. Mol. Biol. 2008, 15:795-804.
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 795-804
-
-
Vasiljeva, L.1
Kim, M.2
Mutschler, H.3
Buratowski, S.4
Meinhart, A.5
-
41
-
-
42449084129
-
Protein factors in pre-mRNA 3'-end processing
-
Mandel C.R., Bai Y., Tong L. Protein factors in pre-mRNA 3'-end processing. Cell. Mol. Life Sci. 2008, 65:1099-1122.
-
(2008)
Cell. Mol. Life Sci.
, vol.65
, pp. 1099-1122
-
-
Mandel, C.R.1
Bai, Y.2
Tong, L.3
-
42
-
-
0035022577
-
A block to mRNA nuclear export in S. cerevisiae leads to hyperadenylation of transcripts that accumulate at the site of transcription
-
Jensen T.H., Patricio K., McCarthy T., Rosbash M. A block to mRNA nuclear export in S. cerevisiae leads to hyperadenylation of transcripts that accumulate at the site of transcription. Mol. Cell 2001, 7:887-898.
-
(2001)
Mol. Cell
, vol.7
, pp. 887-898
-
-
Jensen, T.H.1
Patricio, K.2
McCarthy, T.3
Rosbash, M.4
-
43
-
-
53749089421
-
THO/Sub2p functions to coordinate 3'-end processing with gene-nuclear pore association
-
Rougemaille M., Dieppois G., Kisseleva-Romanova E., Gudipati R.K., Lemoine S., Blugeon C., Boulay J., Jensen T.H., Stutz F., Devaux F., Libri D. THO/Sub2p functions to coordinate 3'-end processing with gene-nuclear pore association. Cell 2008, 135:308-321.
-
(2008)
Cell
, vol.135
, pp. 308-321
-
-
Rougemaille, M.1
Dieppois, G.2
Kisseleva-Romanova, E.3
Gudipati, R.K.4
Lemoine, S.5
Blugeon, C.6
Boulay, J.7
Jensen, T.H.8
Stutz, F.9
Devaux, F.10
Libri, D.11
-
44
-
-
39449096135
-
Genome instability: a mechanistic view of its causes and consequences
-
Aguilera A., Gomez-Gonzalez B. Genome instability: a mechanistic view of its causes and consequences. Nat. Rev. Genet. 2008, 9:204-217.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 204-217
-
-
Aguilera, A.1
Gomez-Gonzalez, B.2
-
45
-
-
0031439267
-
The yeast HPR1 gene has a functional role in transcriptional elongation that uncovers a novel source of genome instability
-
Chavez S., Aguilera A. The yeast HPR1 gene has a functional role in transcriptional elongation that uncovers a novel source of genome instability. Genes Dev. 1997, 11:3459-3470.
-
(1997)
Genes Dev.
, vol.11
, pp. 3459-3470
-
-
Chavez, S.1
Aguilera, A.2
-
46
-
-
0034808138
-
Hpr1 is preferentially required for transcription of either long or G+C-rich DNA sequences in Saccharomyces cerevisiae
-
Chavez S., Garcia-Rubio M., Prado F., Aguilera A. Hpr1 is preferentially required for transcription of either long or G+C-rich DNA sequences in Saccharomyces cerevisiae. Mol. Cell. Biol. 2001, 21:7054-7064.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 7054-7064
-
-
Chavez, S.1
Garcia-Rubio, M.2
Prado, F.3
Aguilera, A.4
-
47
-
-
0036889142
-
Interactions between mRNA export commitment, 3'-end quality control, and nuclear degradation
-
Libri D., Dower K., Boulay J., Thomsen R., Rosbash M., Jensen T.H. Interactions between mRNA export commitment, 3'-end quality control, and nuclear degradation. Mol. Cell. Biol. 2002, 22:8254-8266.
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 8254-8266
-
-
Libri, D.1
Dower, K.2
Boulay, J.3
Thomsen, R.4
Rosbash, M.5
Jensen, T.H.6
-
48
-
-
20444366920
-
Interdependence between transcription and mRNP processing and export, and its impact on genetic stability
-
Luna R., Jimeno S., Marin M., Huertas P., Garcia-Rubio M., Aguilera A. Interdependence between transcription and mRNP processing and export, and its impact on genetic stability. Mol. Cell 2005, 18:711-722.
-
(2005)
Mol. Cell
, vol.18
, pp. 711-722
-
-
Luna, R.1
Jimeno, S.2
Marin, M.3
Huertas, P.4
Garcia-Rubio, M.5
Aguilera, A.6
-
49
-
-
15244358670
-
Distinction and relationship between elongation rate and processivity of RNA polymerase II in vivo
-
Mason P.B., Struhl K. Distinction and relationship between elongation rate and processivity of RNA polymerase II in vivo. Mol. Cell 2005, 17:831-840.
-
(2005)
Mol. Cell
, vol.17
, pp. 831-840
-
-
Mason, P.B.1
Struhl, K.2
-
50
-
-
34247628538
-
Dissecting mechanisms of nuclear mRNA surveillance in THO/sub2 complex mutants
-
Rougemaille M., Gudipati R.K., Olesen J.R., Thomsen R., Seraphin B., Libri D., Jensen T.H. Dissecting mechanisms of nuclear mRNA surveillance in THO/sub2 complex mutants. EMBO J. 2007, 26:2317-2326.
-
(2007)
EMBO J.
, vol.26
, pp. 2317-2326
-
-
Rougemaille, M.1
Gudipati, R.K.2
Olesen, J.R.3
Thomsen, R.4
Seraphin, B.5
Libri, D.6
Jensen, T.H.7
-
51
-
-
46149091048
-
Nuclear mRNA surveillance in THO/sub2 mutants is triggered by inefficient polyadenylation
-
Saguez C., Schmid M., Olesen J.R., Ghazy M.A., Qu X., Poulsen M.B., Nasser T., Moore C., Jensen T.H. Nuclear mRNA surveillance in THO/sub2 mutants is triggered by inefficient polyadenylation. Mol. Cell 2008, 31:91-103.
-
(2008)
Mol. Cell
, vol.31
, pp. 91-103
-
-
Saguez, C.1
Schmid, M.2
Olesen, J.R.3
Ghazy, M.A.4
Qu, X.5
Poulsen, M.B.6
Nasser, T.7
Moore, C.8
Jensen, T.H.9
-
52
-
-
0032964808
-
The Saccharomyces cerevisiae hyperrecombination mutant hpr1Delta is synthetically lethal with two conditional alleles of the acetyl coenzyme A carboxylase gene and causes a defect in nuclear export of polyadenylated RNA
-
Schneiter R., Guerra C.E., Lampl M., Gogg G., Kohlwein S.D., Klein H.L. The Saccharomyces cerevisiae hyperrecombination mutant hpr1Delta is synthetically lethal with two conditional alleles of the acetyl coenzyme A carboxylase gene and causes a defect in nuclear export of polyadenylated RNA. Mol. Cell. Biol. 1999, 19:3415-3422.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 3415-3422
-
-
Schneiter, R.1
Guerra, C.E.2
Lampl, M.3
Gogg, G.4
Kohlwein, S.D.5
Klein, H.L.6
-
53
-
-
0037118052
-
TREX is a conserved complex coupling transcription with messenger RNA export
-
Strasser K., Masuda S., Mason P., Pfannstiel J., Oppizzi M., Rodriguez-Navarro S., Rondon A.G., Aguilera A., Struhl K., Reed R., Hurt E. TREX is a conserved complex coupling transcription with messenger RNA export. Nature 2002, 417:304-308.
-
(2002)
Nature
, vol.417
, pp. 304-308
-
-
Strasser, K.1
Masuda, S.2
Mason, P.3
Pfannstiel, J.4
Oppizzi, M.5
Rodriguez-Navarro, S.6
Rondon, A.G.7
Aguilera, A.8
Struhl, K.9
Reed, R.10
Hurt, E.11
-
54
-
-
0035807308
-
Quality control of mRNA 3'-end processing is linked to the nuclear exosome
-
Hilleren P., McCarthy T., Rosbash M., Parker R., Jensen T.H. Quality control of mRNA 3'-end processing is linked to the nuclear exosome. Nature 2001, 413:538-542.
-
(2001)
Nature
, vol.413
, pp. 538-542
-
-
Hilleren, P.1
McCarthy, T.2
Rosbash, M.3
Parker, R.4
Jensen, T.H.5
-
55
-
-
0035975969
-
The DECD box putative ATPase Sub2p is an early mRNA export factor
-
Jensen T.H., Boulay J., Rosbash M., Libri D. The DECD box putative ATPase Sub2p is an early mRNA export factor. Curr. Biol. 2001, 11:1711-1715.
-
(2001)
Curr. Biol.
, vol.11
, pp. 1711-1715
-
-
Jensen, T.H.1
Boulay, J.2
Rosbash, M.3
Libri, D.4
-
56
-
-
0034068905
-
The role of nuclear cap binding protein Cbc1p of yeast in mRNA termination and degradation
-
Das B., Guo Z., Russo P., Chartrand P., Sherman F. The role of nuclear cap binding protein Cbc1p of yeast in mRNA termination and degradation. Mol. Cell. Biol. 2000, 20:2827-2838.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 2827-2838
-
-
Das, B.1
Guo, Z.2
Russo, P.3
Chartrand, P.4
Sherman, F.5
-
57
-
-
0042632964
-
Degradation of normal mRNA in the nucleus of Saccharomyces cerevisiae
-
Das B., Butler J.S., Sherman F. Degradation of normal mRNA in the nucleus of Saccharomyces cerevisiae. Mol. Cell. Biol. 2003, 23:5502-5515.
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 5502-5515
-
-
Das, B.1
Butler, J.S.2
Sherman, F.3
-
58
-
-
25444510117
-
A nuclear degradation pathway controls the abundance of normal mRNAs in Saccharomyces cerevisiae
-
Kuai L., Das B., Sherman F. A nuclear degradation pathway controls the abundance of normal mRNAs in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. U. S. A. 2005, 102:13962-13967.
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 13962-13967
-
-
Kuai, L.1
Das, B.2
Sherman, F.3
-
59
-
-
0032865541
-
Genomic-scale quantitative analysis of yeast pre-mRNA splicing: implications for splice-site recognition
-
Lopez P.J., Seraphin B. Genomic-scale quantitative analysis of yeast pre-mRNA splicing: implications for splice-site recognition. RNA 1999, 5:1135-1137.
-
(1999)
RNA
, vol.5
, pp. 1135-1137
-
-
Lopez, P.J.1
Seraphin, B.2
-
60
-
-
0032876602
-
A handful of intron-containing genes produces the lion's share of yeast mRNA
-
Ares M., Grate L., Pauling M.H. A handful of intron-containing genes produces the lion's share of yeast mRNA. RNA 1999, 5:1138-1139.
-
(1999)
RNA
, vol.5
, pp. 1138-1139
-
-
Ares, M.1
Grate, L.2
Pauling, M.H.3
-
61
-
-
0034664803
-
Identification of a regulated pathway for nuclear pre-mRNA turnover
-
Bousquet-Antonelli C., Presutti C., Tollervey D. Identification of a regulated pathway for nuclear pre-mRNA turnover. Cell 2000, 102:765-775.
-
(2000)
Cell
, vol.102
, pp. 765-775
-
-
Bousquet-Antonelli, C.1
Presutti, C.2
Tollervey, D.3
-
62
-
-
84869082850
-
Transcriptome-wide analysis of exosome targets
-
Schneider C., Kudla G., Wlotzka W., Tuck A., Tollervey D. Transcriptome-wide analysis of exosome targets. Mol. Cell 2012, 48:422-433.
-
(2012)
Mol. Cell
, vol.48
, pp. 422-433
-
-
Schneider, C.1
Kudla, G.2
Wlotzka, W.3
Tuck, A.4
Tollervey, D.5
-
63
-
-
84864322244
-
Rrp6p controls mRNA poly(A) tail length and its decoration with poly(A) binding proteins
-
Schmid M., Poulsen M.B., Olszewski P., Pelechano V., Saguez C., Gupta I., Steinmetz L.M., Moore C., Jensen T.H. Rrp6p controls mRNA poly(A) tail length and its decoration with poly(A) binding proteins. Mol. Cell 2012, 47:267-280.
-
(2012)
Mol. Cell
, vol.47
, pp. 267-280
-
-
Schmid, M.1
Poulsen, M.B.2
Olszewski, P.3
Pelechano, V.4
Saguez, C.5
Gupta, I.6
Steinmetz, L.M.7
Moore, C.8
Jensen, T.H.9
-
64
-
-
80053597137
-
A Pre-mRNA degradation pathway that selectively targets intron-containing genes requires the nuclear poly(A)-binding protein
-
Lemieux C., Marguerat S., Lafontaine J., Barbezier N., Bahler J., Bachand F. A Pre-mRNA degradation pathway that selectively targets intron-containing genes requires the nuclear poly(A)-binding protein. Mol. Cell 2011, 44:108-119.
-
(2011)
Mol. Cell
, vol.44
, pp. 108-119
-
-
Lemieux, C.1
Marguerat, S.2
Lafontaine, J.3
Barbezier, N.4
Bahler, J.5
Bachand, F.6
-
65
-
-
0033960962
-
A nuclear 3'-5' exonuclease involved in mRNA degradation interacts with Poly(A) polymerase and the hnRNA protein Npl3p
-
Burkard K.T., Butler J.S. A nuclear 3'-5' exonuclease involved in mRNA degradation interacts with Poly(A) polymerase and the hnRNA protein Npl3p. Mol. Cell. Biol. 2000, 20:604-616.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 604-616
-
-
Burkard, K.T.1
Butler, J.S.2
-
66
-
-
0035983990
-
Processing of 3'-extended read-through transcripts by the exosome can generate functional mRNAs
-
Torchet C., Bousquet-Antonelli C., Milligan L., Thompson E., Kufel J., Tollervey D. Processing of 3'-extended read-through transcripts by the exosome can generate functional mRNAs. Mol. Cell 2002, 9:1285-1296.
-
(2002)
Mol. Cell
, vol.9
, pp. 1285-1296
-
-
Torchet, C.1
Bousquet-Antonelli, C.2
Milligan, L.3
Thompson, E.4
Kufel, J.5
Tollervey, D.6
-
67
-
-
2642574393
-
Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae
-
Kadaba S., Krueger A., Trice T., Krecic A.M., Hinnebusch A.G., Anderson J. Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae. Genes Dev. 2004, 18:1227-1240.
-
(2004)
Genes Dev.
, vol.18
, pp. 1227-1240
-
-
Kadaba, S.1
Krueger, A.2
Trice, T.3
Krecic, A.M.4
Hinnebusch, A.G.5
Anderson, J.6
-
68
-
-
29544450711
-
Rapid tRNA decay can result from lack of nonessential modifications
-
Alexandrov A., Chernyakov I., Gu W., Hiley S.L., Hughes T.R., Grayhack E.J., Phizicky E.M. Rapid tRNA decay can result from lack of nonessential modifications. Mol. Cell 2006, 21:87-96.
-
(2006)
Mol. Cell
, vol.21
, pp. 87-96
-
-
Alexandrov, A.1
Chernyakov, I.2
Gu, W.3
Hiley, S.L.4
Hughes, T.R.5
Grayhack, E.J.6
Phizicky, E.M.7
-
69
-
-
44149119097
-
Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5'-3' exonucleases Rat1 and Xrn1
-
Chernyakov I., Whipple J.M., Kotelawala L., Grayhack E.J., Phizicky E.M. Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5'-3' exonucleases Rat1 and Xrn1. Genes Dev. 2008, 22:1369-1380.
-
(2008)
Genes Dev.
, vol.22
, pp. 1369-1380
-
-
Chernyakov, I.1
Whipple, J.M.2
Kotelawala, L.3
Grayhack, E.J.4
Phizicky, E.M.5
-
70
-
-
65649104440
-
A convergence of rRNA and mRNA quality control pathways revealed by mechanistic analysis of nonfunctional rRNA decay
-
Cole S.E., LaRiviere F.J., Merrikh C.N., Moore M.J. A convergence of rRNA and mRNA quality control pathways revealed by mechanistic analysis of nonfunctional rRNA decay. Mol. Cell 2009, 34:440-450.
-
(2009)
Mol. Cell
, vol.34
, pp. 440-450
-
-
Cole, S.E.1
LaRiviere, F.J.2
Merrikh, C.N.3
Moore, M.J.4
-
71
-
-
33645727798
-
Surveillance of nuclear-restricted pre-ribosomes within a subnucleolar region of Saccharomyces cerevisiae
-
Dez C., Houseley J., Tollervey D. Surveillance of nuclear-restricted pre-ribosomes within a subnucleolar region of Saccharomyces cerevisiae. EMBO J. 2006, 25:1534-1546.
-
(2006)
EMBO J.
, vol.25
, pp. 1534-1546
-
-
Dez, C.1
Houseley, J.2
Tollervey, D.3
|