1,2,3,4-Diepoxybutane-induced DNA-protein cross-linking in human fibrosarcoma (HT1080) cells

Journal of Proteome Research

Volumn 12, Issue 5, 2013, Pages 2151-2164

  Gherezghiher, Teshome B ^a   Ming, Xun ^a   Villalta, Peter W ^c   Campbell, Colin ^b   Tretyakova, Natalia Y ^a  

^a UNIVERSITY OF MINNESOTA   (United States)

^b UNIVERSITY OF MINNESOTA   (United States)

^c NONE

Author keywords

diepoxybutane; DNA protein cross links; mass spectrometry; proteomics; Western blot

Indexed keywords

BUTADIENE DIEPOXIDE; CITIOLONE; HIGH MOBILITY GROUP A PROTEIN; HISTONE; TRANSCRIPTION FACTOR; TUBULIN;

ARTICLE; CANCER CELL CULTURE; CONTROLLED STUDY; DNA CROSS LINKING; DNA REPAIR; FIBROSARCOMA; HUMAN; HUMAN CELL; MASS SPECTROMETRY; PRIORITY JOURNAL; PROTEIN CROSS LINKING; PROTEIN DNA INTERACTION; PROTEOMICS; TRANSCRIPTION REGULATION; WESTERN BLOTTING;

AMINO ACID SEQUENCE; CELL LINE, TUMOR; CELL SURVIVAL; CROSS-LINKING REAGENTS; DNA; DNA-BINDING PROTEINS; EPOXY COMPOUNDS; FIBROSARCOMA; GENOME, HUMAN; HUMANS; MOLECULAR SEQUENCE ANNOTATION; PROTEIN BINDING; PROTEOME; PROTEOMICS; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; TANDEM MASS SPECTROMETRY;

EID: 84877110276     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr3011974     Document Type: Article

References (36)

1. Barker, S.; Weinfeld, M.; Murray, D. DNA-protein crosslinks: their induction, repair, and biological consequences Mutat. Res. 2005, 589, 111-135
2. Michaelson-Richie, E. D.; Loeber, R. L.; Codreanu, S. G.; Ming, X.; Liebler, D. C.; Campbell, C.; Tretyakova, N. Y. DNA-protein cross-linking by 1,2,3,4-diepoxybutane J. Proteome Res. 2010, 9, 4356-4367
3. 6-alkylguanine DNA alkyltransferase to DNA in the presence of 1,2,3,4-diepoxybutane Chem. Res. Toxicol. 2006, 19, 645-654
4. Murata-Kamiya, N.; Kamiya, H. Methylglyoxal, an endogenous aldehyde, crosslinks DNA polymerase and the substrate DNA Nucleic Acids Res. 2001, 29, 3433-3438
5. Merk, O.; Speit, G. Significance of formaldehyde-induced DNA-protein crosslinks for mutagenesis Environ. Mol. Mutagen. 1998, 32, 260-268
6. Barker, S.; Weinfeld, M.; Zheng, J.; Li, L.; Murray, D. Identification of mammalian proteins cross-linked to DNA by ionizing radiation J. Biol. Chem. 2005, 280, 33826-33838
7. Zhitkovich, A.; Voitkun, V.; Kluz, T.; Costa, M. Utilization of DNA-protein cross-links as a biomarker of chromium exposure Environ. Health Perspect. 1998, 106 (Suppl. 4) 969-974
8. Michaelson-Richie, E. D.; Ming, X.; Codreanu, S. G.; Loeber, R. L.; Liebler, D. C.; Campbell, C.; Tretyakova, N. Y. Mechlorethamine-induced DNA-protein cross-linking in human fibrosarcoma (HT1080) cells J. Proteome. Res. 2011, 10, 2785-2796
9. Baker, J. M.; Parish, J. H.; Curtis, J. P. DNA-DNA and DNA-protein crosslinking and repair in Neurospora crassa following exposure to nitrogen mustard Mutat. Res. 1984, 132, 171-179
10. Ewig, R. A.; Kohn, K. W. DNA damage and repair in mouse leukemia L1210 cells treated with nitrogen mustard, 1,3-bis(2-chloroethyl)-1-nitrosourea, and other nitrosoureas Cancer Res. 1977, 37, 2114-2122
11. Kloster, M.; Kostrhunova, H.; Zaludova, R.; Malina, J.; Kasparkova, J.; Brabec, V.; Farrell, N. Trifunctional dinuclear platinum complexes as DNA-protein cross-linking agent Biochemistry 2004, 43, 7776-7786
12. Ewig, R. A.; Kohn, K. W. DNA-protein cross-linking and DNA interstrand cross-linking by haloethylnitrosoureas in L1210 cells Cancer Res. 1978, 38, 3197-3203
13. Morrow, N. L. The industrial production and use of 1,3-butadiene Environ. Health Perspect. 1990, 86, 7-8
14. Hecht, S. S. Tobacco smoke carcinogens and lung cancer J. Natl. Cancer Inst. 1999, 91, 1194-1210
15. Jelitto, B.; Vangala, R. R.; Laib, R. J. Species differences in DNA damage by butadiene: role of diepoxybutane Arch. Toxicol. Suppl. 1989, 13, 246-249
16. Loecken, E. M.; Guengerich, F. P. Reactions of glyceraldehyde 3-phosphate dehydrogenase sulfhydryl groups with bis -electrophiles produce DNA-protein cross-links but not mutations Chem. Res. Toxicol. 2008, 21, 453-458
17. Loecken, E. M.; Dasari, S.; Hill, S.; Tabb, D. L.; Guengerich, F. P. The bis -electrophile diepoxybutane cross-links DNA to human histones but does not result in enhanced mutagenesis in recombinant systems Chem. Res. Toxicol. 2009, 22, 1069-1076
18. Thier, R.; Pemble, S. E.; Kramer, H.; Taylor, J. B.; Guengerich, F. P.; Ketterer, B. Human glutathione S -transferase T1-1 enhances mutagenicity of 1,2-dibromoethane, dibromomethane and 1,2,3,4-diepoxybutane in Salmonella typhimurium Carcinogenesis 1996, 17, 163-166
19. Thier, R.; Muller, M.; Taylor, J. B.; Pemble, S. E.; Ketterer, B.; Guengerich, F. P. Enhancement of bacterial mutagenicity of bifunctional alkylating agents by expression of mammalian glutathione S -transferase Chem. Res. Toxicol. 1995, 8, 465-472
20. Rasheed, S.; Nelson-Rees, W. A.; Toth, E. M.; Arnstein, P.; Gardner, M. B. Characterization of a newly derived human sarcoma cell line (HT-1080) Cancer 1974, 33, 1027-1033
21. Shin, N. Y.; Liu, Q.; Stamer, S. L.; Liebler, D. C. Protein targets of reactive electrophiles in human liver microsomes Chem. Res. Toxicol. 2007, 20, 859-867
22. Yates, J. R., III; Eng, J. K.; McCormack, A. L. Mining genomes: correlating tandem mass spectra of modified and unmodified peptides to sequences in nucleotide databases Anal. Chem. 1995, 67, 3202-3210
23. Zhang, B.; Chambers, M. C.; Tabb, D. L. Proteomic parsimony through bipartite graph analysis improves accuracy and transparency J. Proteome Res. 2007, 6, 3549-3557
24. Loeber, R. L.; Michaelson-Richie, E. D.; Codreanu, S. G.; Liebler, D. C.; Campbell, C. R.; Tretyakova, N. Y. Proteomic analysis of DNA-protein cross-linking by antitumor nitrogen mustards Chem. Res. Toxicol. 2009, 22, 1151-1162
25. Summer, H.; Li, O.; Bao, Q.; Zhan, L.; Peter, S.; Sathiyanathan, P.; Henderson, D.; Klonisch, T.; Goodman, S. D.; Droge, P. HMGA2 exhibits dRP/AP site cleavage activity and protects cancer cells from DNA-damage-induced cytotoxicity during chemotherapy Nucleic Acids Res. 2009, 37, 4371-4384
26. Liu, H.; Lu, Z. G.; Miki, Y.; Yoshida, K. Protein kinase C delta induces transcription of the TP53 tumor suppressor gene by controlling death-promoting factor Btf in the apoptotic response to DNA damage Mol. Cell. Biol. 2007, 27, 8480-8491
27. Xie, J.; Guo, Q. Apoptosis antagonizing transcription factor protects renal tubule cells against oxidative damage and apoptosis induced by ischemia-reperfusion J. Am. Soc. Nephrol. 2006, 17, 3336-3346
28. Maggi, L. B., Jr.; Kuchenruether, M.; Dadey, D. Y.; Schwope, R. M.; Grisendi, S.; Townsend, R. R.; Pandolfi, P. P.; Weber, J. D. Nucleophosmin serves as a rate-limiting nuclear export chaperone for the Mammalian ribosome Mol. Cell. Biol. 2008, 28, 7050-7065
29. Okuwaki, M.; Matsumoto, K.; Tsujimoto, M.; Nagata, K. Function of nucleophosmin/B23, a nucleolar acidic protein, as a histone chaperone FEBS Lett. 2001, 506, 272-276
30. Grisendi, S.; Bernardi, R.; Rossi, M.; Cheng, K.; Khandker, L.; Manova, K.; Pandolfi, P. P. Role of nucleophosmin in embryonic development and tumorigenesis Nature 2005, 437, 147-153
31. Bai, R. Y.; Ouyang, T.; Miething, C.; Morris, S. W.; Peschel, C.; Duyster, J. Nucleophosmin-anaplastic lymphoma kinase associated with anaplastic large-cell lymphoma activates the phosphatidylinositol 3-kinase/Akt antiapoptotic signaling pathway Blood 2000, 96, 4319-4327
32. 6- alkylguanine DNA alkyltransferase to DNA in the presence of antitumor nitrogen mustards Chem. Res. Toxicol. 2008, 21, 787-795
33. Ide, H.; Shoulkamy, M. I.; Nakano, T.; Miyamoto-Matsubara, M.; Salem, A. M. Repair and biochemical effects of DNA-protein crosslinks Mutat. Res. 2011, 711, 113-122
34. 6-alkylguanine-DNA alkyltransferase Chem. Res. Toxicol. 2004, 17, 972-982
35. Fountoulakis, M.; Tsangaris, G.; Oh, J.; Maris, A.; Lubec, G. Protein profile of the HeLa cell line J. Chromatogr.. A 2004, 1038, 247-265
36. Nakano, T.; Morishita, S.; Katafuchi, A.; Matsubara, M.; Horikawa, Y.; Terato, H.; Salem, A. M.; Izumi, S.; Pack, S. P.; Makino, K.; Ide, H. Nucleotide excision repair and homologous recombination systems commit differentially to the repair of DNA-protein crosslinks Mol. Cell 2007, 28, 147-158