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Volumn 5, Issue 1, 2013, Pages 243-254

Chloroplast phylogenomics indicates that Ginkgo biloba is sister to cycads

Author keywords

Chloroplast; Cycads; Ginkgo; Phylogenomics; Seed plants

Indexed keywords

CYCADALES; CYCADOPSIDA; GINKGO BILOBA; GINKGOALES; GNETOPHYTA; GNETOPSIDA; SPERMATOPHYTA;

EID: 84876525951     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evt001     Document Type: Article
Times cited : (58)

References (70)
  • 1
    • 20444491634 scopus 로고    scopus 로고
    • A review of long-branch attraction
    • Bergsten J. 2005. A review of long-branch attraction. Cladistics 21: 163-193.
    • (2005) Cladistics , vol.21 , pp. 163-193
    • Bergsten, J.1
  • 2
    • 0034636023 scopus 로고    scopus 로고
    • Phylogeny of seed plants based on all three genomic compartments: Extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers
    • Bowe LM, Coat G, dePamphilis CW. 2000. Phylogeny of seed plants based on all three genomic compartments: extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers. Proc Natl Acad Sci U S A. 97:4092-4097.
    • (2000) Proc Natl Acad Sci U S A. , vol.97 , pp. 4092-4097
    • Bowe, L.M.1    Coat, G.2    De Pamphilis, C.W.3
  • 3
    • 0141726796 scopus 로고    scopus 로고
    • Cycads: Evolutionary innovations and the role of plant-derived neurotoxins
    • Brenner ED, Stevenson DW, Twigg RW. 2003. Cycads: evolutionary innovations and the role of plant-derived neurotoxins. Trends Plant Sci. 8: 446-452.
    • (2003) Trends Plant Sci. , vol.8 , pp. 446-452
    • Brenner, E.D.1    Stevenson, D.W.2    Twigg, R.W.3
  • 4
    • 10644238478 scopus 로고    scopus 로고
    • Phylogenetic signal in nucleotide data from seed plants: Implications for resolving the seed plant tree of life
    • Burleigh JG, Mathews S. 2004. Phylogenetic signal in nucleotide data from seed plants: implications for resolving the seed plant tree of life. Am J Bot. 91:1599-1613.
    • (2004) Am J Bot. , vol.91 , pp. 1599-1613
    • Burleigh, J.G.1    Mathews, S.2
  • 5
    • 2442517979 scopus 로고    scopus 로고
    • Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes
    • Chaw SM, Chang CC, Chen HL, Li WH. 2004. Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes. J Mol Evol. 58:424-441.
    • (2004) J Mol Evol. , vol.58 , pp. 424-441
    • Chaw, S.M.1    Chang, C.C.2    Chen, H.L.3    Li, W.H.4
  • 6
    • 0034636037 scopus 로고    scopus 로고
    • Seed plant phylogeny inferred from all three plant genomes: Monophyly of extant gymnosperms and origin of Gnetales from conifers
    • Chaw SM, Parkinson CL, Cheng Y, Vincent TM, Palmer JD. 2000. Seed plant phylogeny inferred from all three plant genomes: monophyly of extant gymnosperms and origin of Gnetales from conifers. Proc Natl Acad Sci U S A. 97:4086-4091.
    • (2000) Proc Natl Acad Sci U S A. , vol.97 , pp. 4086-4091
    • Chaw, S.M.1    Parkinson, C.L.2    Cheng, Y.3    Vincent, T.M.4    Palmer, J.D.5
  • 7
    • 25144494505 scopus 로고    scopus 로고
    • A phylogeny of cycads (Cycadales) inferred from chloroplast matK gene, trnK intron, and nuclear rDNA ITS region
    • Chaw SM, Walters TW, Chang CC, Hu SH, Chen SH. 2005. A phylogeny of cycads (Cycadales) inferred from chloroplast matK gene, trnK intron, and nuclear rDNA ITS region. Mol Phylogenet Evol. 37: 214-234.
    • (2005) Mol Phylogenet Evol. , vol.37 , pp. 214-234
    • Chaw, S.M.1    Walters, T.W.2    Chang, C.C.3    Hu, S.H.4    Chen, S.H.5
  • 8
    • 0031012107 scopus 로고    scopus 로고
    • Molecular phylogeny of extant gymnosperms and seed plant evolution: Analysis of nuclear 18S rRNA sequences
    • Chaw SM, Zharkikh A, Sung HM, Lau TC, Li WH. 1997. Molecular phylogeny of extant gymnosperms and seed plant evolution: analysis of nuclear 18S rRNA sequences. Mol Biol Evol. 14:56-68.
    • (1997) Mol Biol Evol. , vol.14 , pp. 56-68
    • Chaw, S.M.1    Zharkikh, A.2    Sung, H.M.3    Lau, T.C.4    Li, W.H.5
  • 9
    • 77958474295 scopus 로고    scopus 로고
    • Using phylogenomic patterns and gene ontology to identify proteins of importance in plant evolution
    • Cibrián-Jaramillo A, et al. 2010. Using phylogenomic patterns and gene ontology to identify proteins of importance in plant evolution. Genome Biol Evol. 2:225-239.
    • (2010) Genome Biol Evol. , vol.2 , pp. 225-239
    • Cibrián-Jaramillo, A.1
  • 10
    • 79954529507 scopus 로고    scopus 로고
    • ProtTest 3: Fast selection of best-fit models of protein evolution
    • Darriba D, Taboada GL, Doallo R, Posada D. 2011. ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics 27:1164-1165.
    • (2011) Bioinformatics , vol.27 , pp. 1164-1165
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.3    Posada, D.4
  • 11
    • 84864453108 scopus 로고    scopus 로고
    • JModelTest 2: More models, new heuristics and parallel computing
    • Darriba D, Taboada GL, Doallo R, Posada D. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nat Methods. 9:772.
    • (2012) Nat Methods. , vol.9 , pp. 772
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.3    Posada, D.4
  • 12
    • 66749144092 scopus 로고    scopus 로고
    • The impact of outgroup choice and missing data on major seed plant phylogenetics using genome-wide EST data
    • de la Torre-Bá rcena JE, et al. 2009. The impact of outgroup choice and missing data on major seed plant phylogenetics using genome-wide EST data. PLoS One 4: e5764.
    • (2009) PLoS One , vol.4
    • De La Torre-Bárcena, J.E.1
  • 13
    • 17744394753 scopus 로고    scopus 로고
    • Phylogenomics and the reconstruction of the tree of life
    • Delsuc F, Brinkmann H, Philippe H. 2005. Phylogenomics and the reconstruction of the tree of life. Nat Rev Genet. 6:361-375.
    • (2005) Nat Rev Genet. , vol.6 , pp. 361-375
    • Delsuc, F.1    Brinkmann, H.2    Philippe, H.3
  • 14
    • 56549086194 scopus 로고    scopus 로고
    • Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants
    • Drouin G, Daoud H, Xia J. 2008. Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants. Mol Phylogenet Evol. 49:827-831.
    • (2008) Mol Phylogenet Evol. , vol.49 , pp. 827-831
    • Drouin, G.1    Daoud, H.2    Xia, J.3
  • 15
    • 42149157760 scopus 로고    scopus 로고
    • Broad phylogenomic sampling improves resolution of the animal tree of life
    • Dunn CW, et al. 2008. Broad phylogenomic sampling improves resolution of the animal tree of life. Nature 452:745-749.
    • (2008) Nature , vol.452 , pp. 745-749
    • Dunn, C.W.1
  • 16
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 17
    • 78650511270 scopus 로고    scopus 로고
    • Multigene phylogeny of the green lineage reveals the origin and diversification of land plants
    • Finet C, Timme RE, Delwiche CF, Marlé taz F. 2010. Multigene phylogeny of the green lineage reveals the origin and diversification of land plants. Curr Biol. 20:2217-2222.
    • (2010) Curr Biol. , vol.20 , pp. 2217-2222
    • Finet, C.1    Timme, R.E.2    Delwiche, C.F.3    Marlétaz, F.4
  • 18
    • 0027470362 scopus 로고
    • The evolutionary history of the seed plant male gametophyte
    • Friedman WE. 1993. The evolutionary history of the seed plant male gametophyte. Trends Ecol Evol. 8:15-21.
    • (1993) Trends Ecol Evol. , vol.8 , pp. 15-21
    • Friedman, W.E.1
  • 19
    • 0030052344 scopus 로고    scopus 로고
    • Noncoding sequences from the slowly evolving chloroplast inverted repeat in addition to rbcL data do not support gnetalean affinities of angiosperms
    • Goremykin V, et al. 1996. Noncoding sequences from the slowly evolving chloroplast inverted repeat in addition to rbcL data do not support gnetalean affinities of angiosperms. Mol Biol Evol. 13:383-396.
    • (1996) Mol Biol Evol. , vol.13 , pp. 383-396
    • Goremykin, V.1
  • 20
    • 3042683994 scopus 로고    scopus 로고
    • The chloroplast genome of Nymphaea alba: Whole-genome analyses and the problem of identifying the most basal angiosperm
    • Goremykin VV, Hirsch-Ernst KI,Wölfl S, Hellwig FH. 2004. The chloroplast genome of Nymphaea alba: whole-genome analyses and the problem of identifying the most basal angiosperm. Mol Biol Evol. 21: 1445-1454.
    • (2004) Mol Biol Evol. , vol.21 , pp. 1445-1454
    • Goremykin, V.V.1    Hirsch-Ernst, K.I.2    Wölfl, S.3    Hellwig, F.H.4
  • 21
    • 62949175457 scopus 로고    scopus 로고
    • Removal of noisy characters from chloroplast genome-scale data suggests revision of phylogenetic placements of Amborella and Ceratophyllum
    • Goremykin VV, Viola R, Hellwig FH. 2009. Removal of noisy characters from chloroplast genome-scale data suggests revision of phylogenetic placements of Amborella and Ceratophyllum. J Mol Evol. 68: 197-204.
    • (2009) J Mol Evol. , vol.68 , pp. 197-204
    • Goremykin, V.V.1    Viola, R.2    Hellwig, F.H.3
  • 22
    • 84871839724 scopus 로고    scopus 로고
    • The evolutionary root of flowering plants
    • Goremykin VV, et al. 2013. The evolutionary root of flowering plants. Syst Biol. 62:50-61.
    • (2013) Syst Biol. , vol.62 , pp. 50-61
    • Goremykin, V.V.1
  • 23
    • 60249089451 scopus 로고    scopus 로고
    • Different gymnosperm outgroups have (mostly) congruent signal regarding the root of flowering plant phylogeny
    • Graham SW, Iles WJ. 2009. Different gymnosperm outgroups have (mostly) congruent signal regarding the root of flowering plant phylogeny. Am J Bot. 96:216-227.
    • (2009) Am J Bot. , vol.96 , pp. 216-227
    • Graham, S.W.1    Iles, W.J.2
  • 24
    • 33745120503 scopus 로고    scopus 로고
    • Seed plant phylogeny: Gnetophytes are derived conifers and a sister group to Pinaceae
    • Hajibabaei M, Xia J, Drouin G. 2006. Seed plant phylogeny: gnetophytes are derived conifers and a sister group to Pinaceae. Mol Phylogenet Evol. 40:208-217.
    • (2006) Mol Phylogenet Evol. , vol.40 , pp. 208-217
    • Hajibabaei, M.1    Xia, J.2    Drouin, G.3
  • 25
    • 56849104634 scopus 로고    scopus 로고
    • Taxon sampling and the accuracy of phylogenetic analyses
    • Heath T, Hedtke S, Hillis D. 2008. Taxon sampling and the accuracy of phylogenetic analyses. J Syst Evol. 46:239-257.
    • (2008) J Syst Evol. , vol.46 , pp. 239-257
    • Heath, T.1    Hedtke, S.2    Hillis, D.3
  • 26
    • 37649007931 scopus 로고    scopus 로고
    • Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
    • Jansen RK, et al. 2007. Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns. Proc Natl Acad Sci U S A. 104:19369-19374.
    • (2007) Proc Natl Acad Sci U S A. , vol.104 , pp. 19369-19374
    • Jansen, R.K.1
  • 28
    • 77958040395 scopus 로고    scopus 로고
    • Complete plastome sequences of Equisetum arvense and Isoetes flaccida: Implications for phylogeny and plastid genome evolution of early land plant lineages
    • Karol KG, et al. 2010. Complete plastome sequences of Equisetum arvense and Isoetes flaccida: implications for phylogeny and plastid genome evolution of early land plant lineages. BMC Evol Biol. 10:321.
    • (2010) BMC Evol Biol. , vol.10 , pp. 321
    • Karol, K.G.1
  • 29
    • 51249125088 scopus 로고    scopus 로고
    • SlowFaster, a user-friendly program for slow-fast analysis and its application on phylogeny of Blastocystis
    • Kostka M, Uzlikova M, Cepicka I, Flegr J. 2008. SlowFaster, a user-friendly program for slow-fast analysis and its application on phylogeny of Blastocystis. BMC Bioinformatics 9:341.
    • (2008) BMC Bioinformatics , vol.9 , pp. 341
    • Kostka, M.1    Uzlikova, M.2    Cepicka, I.3    Flegr, J.4
  • 30
    • 40549115956 scopus 로고    scopus 로고
    • Improvement of molecular phylogenetic inference and the phylogeny of Bilateria
    • Lartillot N, Philippe H. 2008. Improvement of molecular phylogenetic inference and the phylogeny of Bilateria. Philos Trans R Soc Lond B Biol Sci. 363:1463-1472.
    • (2008) Philos Trans R Soc Lond B Biol Sci. , vol.363 , pp. 1463-1472
    • Lartillot, N.1    Philippe, H.2
  • 31
    • 84855272508 scopus 로고    scopus 로고
    • A functional phylogenomic view of the seed plants
    • Lee EK, et al. 2011. A functional phylogenomic view of the seed plants. PLoS Genet. 7:e1002411.
    • (2011) PLoS Genet. , vol.7
    • Lee, E.K.1
  • 33
    • 77958456904 scopus 로고    scopus 로고
    • Comparative chloroplast genomics reveals the evolution of Pinaceae genera and subfamilies
    • Lin CP, Huang JP, Wu CS, Hsu CY, Chaw SM. 2010. Comparative chloroplast genomics reveals the evolution of Pinaceae genera and subfamilies. Genome Biol Evol. 2:504-517.
    • (2010) Genome Biol Evol. , vol.2 , pp. 504-517
    • Lin, C.P.1    Huang, J.P.2    Wu, C.S.3    Hsu, C.Y.4    Chaw, S.M.5
  • 34
    • 84863206928 scopus 로고    scopus 로고
    • Complete chloroplast genome of Ginkgo biloba reveals the mechanism of inverted repeat contraction
    • Lin CP, Wu CS, Huang YY, Chaw SM. 2012. Complete chloroplast genome of Ginkgo biloba reveals the mechanism of inverted repeat contraction. Genome Biol Evol. 4:374-381.
    • (2012) Genome Biol Evol. , vol.4 , pp. 374-381
    • Lin, C.P.1    Wu, C.S.2    Huang, Y.Y.3    Chaw, S.M.4
  • 35
    • 18144368560 scopus 로고    scopus 로고
    • Chloroplast genome phylogenetics: Why we need independent approaches to plant molecular evolution
    • Martin W, Deusch O, Stawski N, Grünheit N, Goremykin V. 2005. Chloroplast genome phylogenetics: why we need independent approaches to plant molecular evolution. Trends Plant Sci. 10: 203-209.
    • (2005) Trends Plant Sci. , vol.10 , pp. 203-209
    • Martin, W.1    Deusch, O.2    Stawski, N.3    Grünheit, N.4    Goremykin, V.5
  • 36
    • 37549054628 scopus 로고    scopus 로고
    • Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms
    • Moore MJ, Bell CD, Soltis PS, Soltis DE. 2007. Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms. Proc Natl Acad Sci U S A. 104:19363-19268.
    • (2007) Proc Natl Acad Sci U S A. , vol.104 , pp. 19363-19268
    • Moore, M.J.1    Bell, C.D.2    Soltis, P.S.3    Soltis, D.E.4
  • 37
    • 77949494249 scopus 로고    scopus 로고
    • Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots
    • Moore MJ, Soltis PS, Bell CD, Burleigh JG, Soltis DE. 2010. Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots. Proc Natl Acad Sci U S A. 107:4623-4628.
    • (2010) Proc Natl Acad Sci U S A. , vol.107 , pp. 4623-4628
    • Moore, M.J.1    Soltis, P.S.2    Bell, C.D.3    Burleigh, J.G.4    Soltis, D.E.5
  • 38
    • 79955535683 scopus 로고    scopus 로고
    • Phylogenetic analysis of the plastid inverted repeat for 244 species: Insights into deeper-level angiosperm relationships from a long, slowly evolving sequence region
    • Moore MJ, et al. 2011. Phylogenetic analysis of the plastid inverted repeat for 244 species: insights into deeper-level angiosperm relationships from a long, slowly evolving sequence region. Int J Plant Sci. 172: 541-558.
    • (2011) Int J Plant Sci. , vol.172 , pp. 541-558
    • Moore, M.J.1
  • 39
    • 79952305603 scopus 로고    scopus 로고
    • Chloroplast genome sequences from total DNA for plant identification
    • Nock CJ, et al. 2011. Chloroplast genome sequences from total DNA for plant identification. Plant Biotechnol J. 9:328-333.
    • (2011) Plant Biotechnol J. , vol.9 , pp. 328-333
    • Nock, C.J.1
  • 40
    • 14244261849 scopus 로고    scopus 로고
    • Comparative development of the spermatozoids of cycads and Ginkgo biloba
    • Norstog KJ, Gifford EM, Stevenson DWM. 2004. Comparative development of the spermatozoids of cycads and Ginkgo biloba. Bot Rev. 70: 5-15.
    • (2004) Bot Rev. , vol.70 , pp. 5-15
    • Norstog, K.J.1    Gifford, E.M.2    Stevenson, D.W.M.3
  • 41
    • 77958043342 scopus 로고    scopus 로고
    • Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life
    • Parfrey LW, et al. 2010. Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life. Syst Biol. 59:518-533.
    • (2010) Syst Biol. , vol.59 , pp. 518-533
    • Parfrey, L.W.1
  • 43
    • 79953716259 scopus 로고    scopus 로고
    • Resolving difficult phylogenetic questions: Why more sequences are not enough
    • Philippe H, et al. 2011. Resolving difficult phylogenetic questions: why more sequences are not enough. PLoS Biol. 9:e1000602.
    • (2011) PLoS Biol. , vol.9
    • Philippe, H.1
  • 44
    • 77955497041 scopus 로고    scopus 로고
    • Improved phylogenomic taxon sampling noticeably affects nonbilaterian relationships
    • Pick KS, et al. 2010. Improved phylogenomic taxon sampling noticeably affects nonbilaterian relationships. Mol Biol Evol. 27:1983-1987.
    • (2010) Mol Biol Evol. , vol.27 , pp. 1983-1987
    • Pick, K.S.1
  • 45
    • 0033635920 scopus 로고    scopus 로고
    • Assessing an unknown evolutionary process: Effect of increasing site-specific knowledge through taxon addition
    • Pollock DD, Bruno WJ. 2000. Assessing an unknown evolutionary process: effect of increasing site-specific knowledge through taxon addition. Mol Biol Evol. 17:1854-1858.
    • (2000) Mol Biol Evol. , vol.17 , pp. 1854-1858
    • Pollock, D.D.1    Bruno, W.J.2
  • 46
    • 0036699885 scopus 로고    scopus 로고
    • Increased taxon sampling is advantageous for phylogenetic inference
    • Pollock DD, Zwickl DJ, McGuire JA, Hillis DM. 2002. Increased taxon sampling is advantageous for phylogenetic inference. Syst Biol. 51: 664-671.
    • (2002) Syst Biol. , vol.51 , pp. 664-671
    • Pollock, D.D.1    Zwickl, D.J.2    McGuire, J.A.3    Hillis, D.M.4
  • 47
    • 34249807028 scopus 로고    scopus 로고
    • A non-flowering land plant phylogeny inferred from nucleotide sequences of seven chloroplast, mitochondrial and nuclear genes
    • Qiu YL, et al. 2007. A non-flowering land plant phylogeny inferred from nucleotide sequences of seven chloroplast, mitochondrial and nuclear genes. Int J Plant Sci. 168:691-708.
    • (2007) Int J Plant Sci. , vol.168 , pp. 691-708
    • Qiu, Y.L.1
  • 48
    • 47649087623 scopus 로고    scopus 로고
    • Inference of higher-order conifer relationships from a multi-locus plastid data set
    • Rai HS, Reeves PA, Peakall R, Olmstead RG, Graham SW. 2008. Inference of higher-order conifer relationships from a multi-locus plastid data set. Botany 86:658-669.
    • (2008) Botany , vol.86 , pp. 658-669
    • Rai, H.S.1    Reeves, P.A.2    Peakall, R.3    Olmstead, R.G.4    Graham, S.W.5
  • 49
    • 70649103857 scopus 로고    scopus 로고
    • Fast evolution of the retroprocessed mitochondrial rps3 gene in Conifer II and further evidence for the phylogeny of gymnosperms
    • Ran JH, Gao H, Wang XQ. 2010. Fast evolution of the retroprocessed mitochondrial rps3 gene in Conifer II and further evidence for the phylogeny of gymnosperms. Mol Phylogenet Evol. 54:136-149.
    • (2010) Mol Phylogenet Evol. , vol.54 , pp. 136-149
    • Ran, J.H.1    Gao, H.2    Wang, X.Q.3
  • 50
    • 77954143435 scopus 로고    scopus 로고
    • Lineage-specific group II intron gains and losses of the mitochondrial rps3 gene in gymnosperms
    • Regina TM, Quagliariello C. 2010. Lineage-specific group II intron gains and losses of the mitochondrial rps3 gene in gymnosperms. Plant Physiol Biochem. 48:646-654.
    • (2010) Plant Physiol Biochem. , vol.48 , pp. 646-654
    • Regina, T.M.1    Quagliariello, C.2
  • 51
    • 33847656285 scopus 로고    scopus 로고
    • Detecting and overcoming systematic errors in genome-scale phylogenies
    • Rodríguez-Ezpeleta N, et al. 2007. Detecting and overcoming systematic errors in genome-scale phylogenies. Syst Biol. 56:389-399.
    • (2007) Syst Biol. , vol.56 , pp. 389-399
    • Rodríguez-Ezpeleta, N.1
  • 52
    • 84860109324 scopus 로고    scopus 로고
    • MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space
    • Ronquist F, et al. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61: 539-542.
    • (2012) Syst Biol. , vol.61 , pp. 539-542
    • Ronquist, F.1
  • 53
    • 76749096782 scopus 로고    scopus 로고
    • Defining the limits of flowers: The challenge of distinguishing between the evolutionary products of simple versus compound strobili
    • Rudall PJ, Bateman RM. 2010. Defining the limits of flowers: the challenge of distinguishing between the evolutionary products of simple versus compound strobili. Philos Trans R Soc Lond B Biol Sci. 365:397-409.
    • (2010) Philos Trans R Soc Lond B Biol Sci. , vol.365 , pp. 397-409
    • Rudall, P.J.1    Bateman, R.M.2
  • 54
    • 0036177790 scopus 로고    scopus 로고
    • Seed plant relationships and the systematic position of Gnetales based on nuclear and chloroplast DNA: Conflicting data, rooting problems, and the monophyly of conifers
    • Rydin C, Källersjö M, Friis EM. 2002. Seed plant relationships and the systematic position of Gnetales based on nuclear and chloroplast DNA: conflicting data, rooting problems, and the monophyly of conifers. Int J Plant Sci. 163:197-214.
    • (2002) Int J Plant Sci. , vol.163 , pp. 197-214
    • Rydin, C.1    Källersjö, M.2    Friis, E.M.3
  • 55
    • 0036926048 scopus 로고    scopus 로고
    • Troubleshooting molecular phylogenetic analyses
    • Sanderson MJ, Shaffer HB. 2002. Troubleshooting molecular phylogenetic analyses. Annu Rev Ecol Syst. 33:49-72.
    • (2002) Annu Rev Ecol Syst. , vol.33 , pp. 49-72
    • Sanderson, M.J.1    Shaffer, H.B.2
  • 56
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 57
    • 10644253746 scopus 로고    scopus 로고
    • Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?
    • Stefanović S, Rice WD, Palmer JD. 2004. Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots? BMC Evol Biol. 4:35.
    • (2004) BMC Evol Biol. , vol.4 , pp. 35
    • Stefanović, S.1    Rice, W.D.2    Palmer, J.D.3
  • 58
    • 0027158760 scopus 로고
    • A rapid CTAB DNA isolation technique useful for RAPD fingerprinting and other PCR applications
    • Stewart CN Jr, Via LE. 1993. A rapid CTAB DNA isolation technique useful for RAPD fingerprinting and other PCR applications. Biotechniques 14: 748-751.
    • (1993) Biotechniques , vol.14 , pp. 748-751
    • Stewart Jr., C.N.1    Via, L.E.2
  • 60
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, et al. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 28:2731-2739.
    • (2011) Mol Biol Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1
  • 61
    • 79955109773 scopus 로고    scopus 로고
    • Improving animal phylogenies with genomic data
    • Telford MJ, Copley RR. 2011. Improving animal phylogenies with genomic data. Trends Genet. 27:186-195.
    • (2011) Trends Genet. , vol.27 , pp. 186-195
    • Telford, M.J.1    Copley, R.R.2
  • 62
    • 80052018698 scopus 로고    scopus 로고
    • An embryological study and systematic significance of the primitive gymnosperm Ginkgo biloba
    • Wang L, et al. 2011. An embryological study and systematic significance of the primitive gymnosperm Ginkgo biloba. J Syst Evol. 49:353-361.
    • (2011) J Syst Evol. , vol.49 , pp. 353-361
    • Wang, L.1
  • 63
    • 0023462635 scopus 로고
    • Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs
    • Wolfe KH, Li WH, Sharp PM. 1987. Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc Natl Acad Sci U S A. 84:9054-9058.
    • (1987) Proc Natl Acad Sci U S A. , vol.84 , pp. 9054-9058
    • Wolfe, K.H.1    Li, W.H.2    Sharp, P.M.3
  • 64
    • 67349273773 scopus 로고    scopus 로고
    • Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: Selection toward a lower-cost strategy
    • Wu CS, Lai YT, Lin CP, Wang YN, Chaw SM. 2009. Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: selection toward a lower-cost strategy. Mol Phylogenet Evol. 52:115-124.
    • (2009) Mol Phylogenet Evol. , vol.52 , pp. 115-124
    • Wu, C.S.1    Lai, Y.T.2    Lin, C.P.3    Wang, Y.N.4    Chaw, S.M.5
  • 65
    • 84855848337 scopus 로고    scopus 로고
    • Loss of different inverted repeat copies from the chloroplast genomes of Pinaceae and cupressophytes and influence of heterotachy on the evaluation of gymnosperm phylogeny
    • Wu CS, Wang YN, Hsu CY, Lin CP, Chaw SM. 2011. Loss of different inverted repeat copies from the chloroplast genomes of Pinaceae and cupressophytes and influence of heterotachy on the evaluation of gymnosperm phylogeny. Genome Biol Evol. 3: 1284-1295.
    • (2011) Genome Biol Evol. , vol.3 , pp. 1284-1295
    • Wu, C.S.1    Wang, Y.N.2    Hsu, C.Y.3    Lin, C.P.4    Chaw, S.M.5
  • 66
    • 34548108492 scopus 로고    scopus 로고
    • Chloroplast genome (cpDNA) of Cycas taitungensis and 56 cp protein-coding genes of Gnetum parvifolium: Insights into cpDNA evolution and phylogeny of extant seed plants
    • Wu CS,Wang YN, Liu SM, Chaw SM. 2007. Chloroplast genome (cpDNA) of Cycas taitungensis and 56 cp protein-coding genes of Gnetum parvifolium: insights into cpDNA evolution and phylogeny of extant seed plants. Mol Biol Evol. 24:1366-1379.
    • (2007) Mol Biol Evol. , vol.24 , pp. 1366-1379
    • Wu Cswang, Y.N.1    Liu, S.M.2    Chaw, S.M.3
  • 67
    • 10244240599 scopus 로고    scopus 로고
    • Automatic annotation of organellar genomes with DOGMA
    • Wyman SK, Jansen RK, Boore JL. 2004. Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20:3252-3255.
    • (2004) Bioinformatics , vol.20 , pp. 3252-3255
    • Wyman, S.K.1    Jansen, R.K.2    Boore, J.L.3
  • 68
    • 78649362791 scopus 로고    scopus 로고
    • The position of gnetales among seed plants: Overcoming pitfalls of chloroplast phylogenomics
    • Zhong B, Yonezawa T, Zhong Y, Hasegawa M. 2010. The position of gnetales among seed plants: overcoming pitfalls of chloroplast phylogenomics. Mol Biol Evol. 27:2855-2863.
    • (2010) Mol Biol Evol. , vol.27 , pp. 2855-2863
    • Zhong, B.1    Yonezawa, T.2    Zhong, Y.3    Hasegawa, M.4
  • 69
    • 84859115343 scopus 로고    scopus 로고
    • Systematic error in seed plant phylogenomics
    • Zhong B, et al. 2011. Systematic error in seed plant phylogenomics. Genome Biol Evol. 3:1340-1348.
    • (2011) Genome Biol Evol. , vol.3 , pp. 1340-1348
    • Zhong, B.1
  • 70
    • 0036699481 scopus 로고    scopus 로고
    • Increased taxon sampling greatly reduces phylogenetic error
    • Zwickl DJ, Hillis DM. 2002. Increased taxon sampling greatly reduces phylogenetic error. Syst Biol. 51:588-598.
    • (2002) Syst Biol. , vol.51 , pp. 588-598
    • Zwickl, D.J.1    Hillis, D.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.