Zygomycetes-based biorefinery: Present status and future prospects

Bioresource Technology

Volumn 135, Issue , 2013, Pages 523-532

  Ferreira, Jorge A ^a   Lennartsson, Patrik R ^a   Edebo, Lars ^b   Taherzadeh, Mohammad J ^a  

^a UNIVERSITY OF BORÅS   (Sweden)

^b UNIVERSITY OF GOTHENBURG   (Sweden)

Author keywords

Biorefinery; Cell mass; Enzymes; Metabolites; Zygomycetes

Indexed keywords

AMINO ACIDS; CHITOSAN; ENZYMES; METABOLITES; PROTEINS; REFINING;

AMINO ACID COMPOSITIONS; BIODIESEL PRODUCTION; BIOREFINERIES; CELL MASS; COMPLEX SUBSTRATES; FUTURE PROSPECTS; SUSTAINABLE PRODUCTS; ZYGOMYCETES;

FUNGI;

ALCOHOL; AMINO ACID; AMYLASE; BIODIESEL; CELLULASE; CELLULOSE; CHITOSAN; FUMARIC ACID; LACTIC ACID; LIPID; OXYGENASE; PHYTASE; PHYTIC ACID; POLYGALACTURONASE; PROTEINASE; STARCH; STEROID 11 ALPHA HYDROXYLASE; UNCLASSIFIED DRUG;

BIOMASS POWER; BIOTECHNOLOGY; CATALYST; CHITIN; ENZYME ACTIVITY; ETHANOL; FERMENTATION; FUNGUS; FUTURE PROSPECT; LIPID; METABOLITE; ORGANIC ACID; REFINING INDUSTRY;

AMINO ACID COMPOSITION; ARTICLE; BIOFUEL PRODUCTION; BIOMASS; CATALYST; EXTRACTION; FERMENTATION; METABOLITE; NONHUMAN; PRIORITY JOURNAL; ZYGOMYCETES;

AMINO ACIDS; CHITOSAN; ENZYMES; FUNGI; METABOLISM; PROTEINS; REFINERS;

ANIMALIA; FUNGI; ZYGOMYCETES;

BIOCATALYSIS; BIOMASS; BIOTECHNOLOGY; FUNGI;

EID: 84876496425     PISSN: 09608524     EISSN: 18732976     Source Type: Journal    
DOI: 10.1016/j.biortech.2012.09.064     Document Type: Article

References (75)

1. Abe A., Oda Y., Asano K., Sone T. Rhizopus delemar is the proper name for Rhizopus oryzae fumaric-malic acid producers. Mycologia 2007, 99:714-722.
2. Akin D.E., Slomczynski D., Rigsby L.L., Eriksson K.-E.L. Retting flax with endopolygalacturonase from Rhizopus oryzae. Text. Res. J. 2002, 72:27-34.
3. Aranaz I., Mengibar M., Harris R., Panos I., Miralles B., Acosta N., Galed G., Heras A. Functional characterization of chitin and chitosan. Curr. Chem. Biol. 2009, 3:203-230.
4. Azeke M.A., Greiner R., Jany K.-D. Purification and characterization of two intracellular phytases from the tempeh fungus Rhizopus oligosporus. J. Food Biochem. 2011, 35:213-227.
5. Bai D.-M., Li S.-Z., Liu Z., Cui Z.-F. Enhanced l-(+)-lactic acid production by an adapted strain of Rhizopus oryzae using corncob hydrolysate. Appl. Biochem. Biotechnol. 2008, 144:79-85.
6. Bai D.-M., Zhao X.-M., Li X.-G., Xu S.-M. Strain improvement of Rhizopus oryzae for over-production of l(+)-lactic acid and metabolic flux analysis of mutants. Biochem. Eng. J. 2004, 18:41-48.
7. Bankefors J., Kaszowska M., Schlechtriem C., Pickova J., Brännäs E., Edebo L., Kiessling A., Sandström C. A comparison of the metabolic profile on intact tissue and extracts of muscle and liver of juvenile Atlantic salmon (Salmo salar L.) - Application to a short feeding study. Food Chem. 2011, 129:1397-1405.
8. Boyce A., Walsh G. Production, purification and application-relevant characterisation of an endo-1,3(4)-β-glucanase from Rhizomucor miehei. Appl. Microbiol. Biotechnol. 2007, 76:835-841.
9. Celestino K., Cunha R., Felix C. Characterization of a β-glucanase produced by Rhizopus microsporus var. microsporus, and its potential for application in the brewing industry. BMC Biochem. 2006, 7:23.
10. Chou W.-I., Pai T.-W., Liu S.-H., Hsiung B.-K., Chang M.D.-T. The family 21 carbohydrate-binding module of glucoamylase from Rhizopus oryzae consists of two sites playing distinct roles in ligand binding. Biochem. J. 2006, 396:469-477.
11. Damásio A.R.D.L., Maller A., Silva T.M.D., Jorge J.A., Terenzi H.F., Polizeli M.D.L.T.D.M. Biotechnological potential of alternative carbon sources for production of pectinases by Rhizopus microsporus var. rhizopodiformis. Braz. Arch. Biol. Technol. 2011, 54:141-148.
12. Ding Y., Li S., Dou C., Yu Y., Huang H. Production of fumaric acid by Rhizopus oryzae: role of carbon-nitrogen ratio. Appl. Biochem. Biotechnol. 2011, 164:1461-1467.
13. Edebo, L., 2008. Zygomycetes for fish feed. World Patent: WO 2008/002231.
14. Fu Y.-Q., Li S., Chen Y., Xu Q., Huang H., Sheng X.-Y. Enhancement of fumaric acid production by Rhizopus oryzae using a two-stage dissolved oxygen control strategy. Appl. Biochem. Biotechnol. 2010, 162:1031-1038.
15. Fu Y., Xu Q., Li S., Huang H., Chen Y. A novel multi-stage preculture strategy of Rhizopus oryzae ME-F12 for fumaric acid production in a stirred-tank reactor. World J. Microbiol. Biotechnol. 2009, 25:1871-1876.
16. Ghosh B., Ray R.R. Current commercial perspective of Rhizopus oryzae: a review. J. Appl. Sci. 2011, 11:2470-2486.
17. Gibbs P.A., Seviour R.J., Schmid F. Growth of filamentous fungi in submerged culture: problems and possible solutions. Crit. Rev. Biotechnol. 2000, 20:17-48.
18. Guo Y., Yan Q., Jiang Z., Teng C., Wang X. Efficient production of lactic acid from sucrose and corncob hydrolysate by a newly isolated Rhizopus oryzae GY18. J. Ind. Microbiol. Biotechnol. 2010, 37:1137-1143.
19. Heskamp M.L., Barz W. Expression of proteases by Rhizopus species during tempeh fermentation of soybeans. Food/Nahrung 1998, 42:23-28.
20. Hjorth, H., 2005. The cell wall of Rhizopus oryzae: structure, properties and applications. Ph.D. thesis. Gothenburg University, Department of Clinical Bacteriology. Gothenburg, Sweden.
21. Huang L., Wei P., Zang R., Xu Z., Cen P. High-throughput screening of high-yield colonies of Rhizopus oryzae for enhanced production of fumaric acid. Ann. Microbiol. 2010, 60:287-292.
22. Ikasari L., Mitchell D.A. Leaching and characterization of Rhizopus oligosporus acid protease from solid-state fermentation. Enzyme Microb. Technol. 1996, 19:171-175.
23. John R., Nampoothiri K., Pandey A. Fermentative production of lactic acid from biomass: an overview on process developments and future perspectives. Appl. Microbiol. Biotechnol. 2007, 74:524-534.
24. Kareem S.O., Adebowale A.A. Clarification of orange juice by crude fungal pectinase from citrus peel. Nig. Food. J. 2007, 25:130-137.
25. Koutinas A.A., Malbranque F., Wang R., Campbell G.M., Webb C. Development of an oat-based biorefinery for the production of l(+)-lactic acid by Rhizopus oryzae and various value-added coproducts. J. Agric. Food Chem. 2007, 55:1755-1761.
26. Krisch, J., Takó, M., Papp, T., Vágvölgyi, C., 2010. Characteristics and potential use of β-glucosidases from zygomycetes. In: Méndez-Vilas, A. (Ed.), Current research, technology and education topics in applied microbiology and microbial biotechnology, vol. 2, Formatex Research Center, pp. 891-896.
27. Lennartsson, P.R., 2012. Zygomycetes and cellulose residuals: hydrolysis, cultivation and applications. Ph.D. thesis. Chalmers University of Technology, Department of Chemical and Biological Engineering. Gothenburg, Sweden.
28. Li N., Deng Z.-N., Qin Y.-L., Chen C.-L., Liang Z.-Q. Production of polyunsaturated fatty acids by Mucor recurvus sp. with sugarcane molasses as the carbon source. Food Technol. Biotechnol. 2008, 46:73-79.
29. Liao W., Liu Y., Chen S., Mielenz J.R., Klasson K.T., Adney W.S., McMillan J.D. Studying pellet formation of a filamentous fungus Rhizopus oryzae to enhance organic acid production. Appl. Biochem. Biotechnol. 2007, 137:689-701.
30. Liao W., Liu Y., Frear C., Chen S. Co-production of fumaric acid and chitin from a nitrogen-rich lignocellulosic material - dairy manure - using a pelletized filamentous fungus Rhizopus oryzae ATCC 20344. Bioresour. Technol. 2008, 99:5859-5866.
31. 3 in airlift bioreactors. J. Biosci. Bioeng. 2006, 101:9-12.
32. Liu Y., Liao W., Chen S. Co-production of lactic acid and chitin using a pelletized filamentous fungus Rhizopus oryzae cultured on cull potatoes and glucose. J. Appl. Microbiol. 2008, 105:1521-1528.
33. M'hir S., Mejri A., Sifaoui I., Slama M.B., Mejri M., Thonart P., Hamdi M. Improvement of protease production by Rhizopus oryzae CH4 grown on wheat gluten using response surface technology and its scale-up in a bioreactor. Arch. Appl. Sci. Res. 2012, 4:1110-1116.
34. Maleki M.H., Ghanbary M.A.T., Ranjbar G.A., Asgharzadeh A., Lotfi A. Screening of some Zygomycetes strains for pectinase activity. J. Microbiol. Biotechnol. Res. 2011, 1:1-7.
35. Mamatha S.S., Halami P.M., Venkateswaran G. Identification and characterization of the n-6 fatty acid-producing Mucor rouxii native isolate CFR-G15. Eur. J. Lipid Sci. Technol. 2010, 112:380-389.
36. Millati R., Edebo L., Taherzadeh M.J. Performance of Rhizopus, Rhizomucor, and Mucor in ethanol production from glucose, xylose, and wood hydrolyzates. Enzyme Microb. Technol. 2005, 36:294-300.
37. Mitra D., Rasmussen M.L., Chand P., Chintareddy V.R., Yao L., Grewell D., Verkade J.G., Wang T., van Leeuwen J. Value-added oil and animal feed production from corn-ethanol stillage using the oleaginous fungus Mucor circinelloides. Bioresour. Technol. 2012, 107:368-375.
38. Mydland L.T., Landsverk T., Zimonia T., Kiessling A., Edebo L., Storebakken T. Mycelium biomass from fungi (Rhizopus oryzae) grown on spent sulphite liquor from paper pulp as a protein source for rainbow trout (Oncorhynchus mykiss) 2007, Abstract European Aquaculture Society, Istanbul.
39. Oda Y., Saito K., Yamauchi H., Mori M. Lactic acid fermentation of potato pulp by the fungus Rhizopus oryzae. Curr. Microbiol. 2002, 45:1-4.
40. Oda Y., Yajima Y., Kinoshita M., Ohnishi M. Differences of Rhizopus oryzae strains in organic acid synthesis and fatty acid composition. Food Microbiol. 2003, 20:371-375.
41. Pandey A., Szakacs G., Soccol C.R., Rodriguez-Leon J.A., Soccol V.T. Production, purification and properties of microbial phytases. Bioresour. Technol. 2001, 77:203-214.
42. Peixoto-Nogueira S., Sandrim V., Guimarães L., Jorge J., Terenzi H., Polizeli M. Evidence of thermostable amylolytic activity from Rhizopus microsporus var rhizopodiformis using wheat bran and corncob as alternative carbon source. Bioprocess Biosyst. Eng. 2008, 31:329-334.
43. Ramachandran S., Roopesh K., Nampoothiri K.M., Szakacs G., Pandey A. Mixed substrate fermentation for the production of phytase by Rhizopus spp. using oilcakes as substrates. Process Biochem. 2005, 40:1749-1754.
44. Ratledge C. Microbial Production of γ-linolenic acid. Handbook of Functional Lipids 2006, Taylor & Francis, Boca Raton, USA. C.C. Akoh (Ed.).
45. Roa Engel C., Straathof A., Zijlmans T., van Gulik W., van der Wielen L. Fumaric acid production by fermentation. Appl. Microbiol. Biotechnol. 2008, 78:379-389.
46. Roa Engel C.A., van Gulik W.M., Marang L., van der Wielen L.A.M., Straathof A.J.J. Development of a low pH fermentation strategy for fumaric acid production by Rhizopus oryzae. Enzyme Microb. Technol. 2011, 48:39-47.
47. Rodríguez-López J., Sánchez A.J., Gómez D.M., Romaní A., Parajó J.C. Fermentative production of fumaric acid from Eucalyptus globulus wood hydrolyzates. J. Chem. Technol. Biotechnol 2011, 10.1002/jctb.2729.
48. Roopesh K., Ramachandran S., Nampoothiri K.M., Szakacs G., Pandey A. Comparison of phytase production on wheat bran and oilcakes in solid-state fermentation by Mucor racemosus. Bioresour. Technol. 2006, 97:506-511.
49. Saha B.C. Production, purification and properties of endoglucanase from a newly isolated strain of Mucor circinelloides. Process Biochem. 2004, 39:1871-1876.
50. Saito K., Hasa Y., Abe H. Production of lactic acid from xylose and wheat straw by Rhizopus oryzae. J. Biosci. Bioeng. 2012, 114:166-169.
51. Saito K., Saito A., Ohnishi M., Oda Y. Genetic diversity in Rhizopus oryzae strains as revealed by the sequence of lactate dehydrogenase genes. Arch. Microbiol. 2004, 182:30-36.
52. Sajbidor J., Certík M., Dobroňová S. Influence of different carbon sources on growth, lipid content and fatty acid composition in four strains belonging to Mucorales. Biotechnol. Lett. 1988, 10:347-350.
53. Shimonaka A., Koga J., Baba Y., Nishimura T., Murashima K., Kubota H., Kono T. Specific characteristics of family 45 endoglucanases from Mucorales in the use of textiles and laundry. Biosci. Biotechnol Biochem. 2006, 70:1013-1016.
54. Shuvaeva G., Sysoeva M. Xylanase of the micromycete Rhizopus var. microsporus 595: preparation, structural and functional characteristics, and application. Appl. Biochem. Microbiol. 2010, 46:641-647.
55. Solomons G.L., Litchfield J.H. Single cell protein. Crit. Rev. Biotechnol. 1983, 1:21-58.
56. Sues A., Millati R., Edebo L., Taherzadeh M.J. Ethanol production from hexoses, pentoses, and dilute-acid hydrolyzate by Mucor indicus. FEMS Yeast Res. 2005, 5:669-676.
57. Taherzadeh M.J., Fox M., Hjorth H., Edebo L. Production of mycelium biomass and ethanol from paper pulp sulfite liquor by Rhizopus oryzae. Bioresour. Technol. 2003, 88:167-177.
58. Takii Y., Ikeda K., Sato C., Yano M., Sato T., Konno H. Production and characterization of β-glucosidase from Rhizopus oryzae MIBA348. J. Biol. Macromol. 2005, 5:11-16.
59. Thongchul N., Navankasattusas S., Yang S.-T. Production of lactic acid and ethanol by Rhizopus oryzae integrated with cassava pulp hydrolysis. Bioprocess Biosyst. Eng. 2010, 33:407-416.
60. Vamvakaki A.-N., Kandarakis I., Kaminarides S., Komaitis M., Papanikolaou S. Cheese whey as a renewable substrate for microbial lipid and biomass production by Zygomycetes. Eng. Life Sci. 2010, 10:348-360.
61. Van Leeuwen J., Rasmussen M.L., Sankaran S., Koza C.R., Erickson D.T., Mitra D., Jin B. Fungal treatment of crop processing wastewaters with value-added co-products. Sustainable Bioenergy and Bioproducts 2012, 13-44. Springer London, London. K. Gopalakrishnan, R.C. Brown (Eds.).
62. Vattem D.A., Shetty K. Solid-state production of phenolic antioxidants from cranberry pomace by Rhizopus oligosporus. Food Biotechnol. 2002, 16:189-210.
63. Vially G., Marchal R., Guilbert N. l (+) lactate production from carbohydrates and lignocellulosic materials by Rhizopus oryzae UMIP 4.77. World J. Microbiol. Biotechnol. 2010, 26:607-614.
64. Wikandari R., Millati R., Lennartsson P., Harmayani E., Taherzadeh M. Isolation and characterization of Zygomycetes fungi from tempe for ethanol production and biomass applications. Appl. Biochem. Biotechnol 2012, 10.1007/s12010-012-9587-x.
65. Wu X., Jiang S., Liu M., Pan L., Zheng Z., Luo S. Production of l-lactic acid by Rhizopus oryzae using semicontinuous fermentation in bioreactor. J. Ind. Microbiol. Biotechnol. 2011, 38:565-571.
66. Xu Q., Li S., Fu Y., Tai C., Huang H. Two-stage utilization of corn straw by Rhizopus oryzae for fumaric acid production. Bioresour. Technol. 2010, 101:6262-6264.
67. Yao W., Wu X., Zhu J., Sun B., Miller C. Utilization of protein extract from dairy manure as a nitrogen source by Rhizopus oryzae NRRL-395 for l-lactic acid production. Bioresour. Technol. 2010, 101:4132-4138.
68. Yegin S., Fernandez-Lahore M., JoseGamaSalgado A., Guvenc U., Goksungur Y., Tari C. Aspartic proteinases from Mucor spp. in cheese manufacturing. Appl. Microbiol. Biotechnol. 2011, 89:949-960.
69. Yen H.-W., Lee Y.-C. Production of lactic acid from raw sweet potato powders by Rhizopus Oryzae immobilized in sodium alginate capsules. Appl. Biochem. Biotechnol. 2010, 162:607-615.
70. Zhang J., Henriksson H., Szabo I., Henriksson G., Johansson G. The active component in the flax-retting system of the zygomycete Rhizopus oryzae sb is a family 28 polygalacturonase. J. Ind. Microbiol. Biotechnol. 2005, 32:431-438.
71. Zhang Z., Jin B., Kelly J. Production of l(+)-lactic acid using acid-adapted precultures of Rhizopus arrhizus in a stirred tank reactor. Appl. Biochem. Biotechnol. 2008, 149:265-276.
72. Zhang Z.Y., Jin B., Kelly J.M. Production of lactic acid from renewable materials by Rhizopus fungi. Biochem. Eng. J. 2007, 35:251-263.
73. Zhou H., Lu W., Wen J., Ma L. Kinetic analysis of 11α-hydroxylation of steroids by Rhizopus nigricans. J. Mol. Catal. B: Enzym. 2009, 56:136-141.
74. Zhou Z., Du G., Hua Z., Zhou J., Chen J. Optimization of fumaric acid production by Rhizopus delemar based on the morphology formation. Bioresour. Technol. 2011, 102:9345-9349.
75. Žnidaršič P., Komel R., Pavko A. Studies of a pelleted growth form of Rhizopus nigricans as a biocatalyst for progesterone 11α-hydroxylation. J. Biotechnol. 1998, 60:207-216.