-
1
-
-
34250692637
-
Inhibition of lysine biosynthesis: An evolving antibiotic strategy
-
Hutton, C. A., Perugini, M. A., and Gerrard, J. A. (2007) Inhibition of lysine biosynthesis: an evolving antibiotic strategy. Mol. Biosyst. 3, 458-465
-
(2007)
Mol. Biosyst.
, vol.3
, pp. 458-465
-
-
Hutton, C.A.1
Perugini, M.A.2
Gerrard, J.A.3
-
2
-
-
77951219030
-
-
(Doelle, H. W., and Rokem, S., eds), Eolss Publishers, Oxford, UK
-
Dogovski, C., Atkinson, S. C., Dommaraju, S. R., Hor, L., Hutton, C. A., Gerrard, J. A., Dobson, R. C. J., and Perugini, M. A. (2009) in Biotechnology (Doelle, H. W., and Rokem, S., eds) pp. 116-136, Eolss Publishers, Oxford, UK
-
(2009)
Biotechnology
, pp. 116-136
-
-
Dogovski, C.1
Atkinson, S.C.2
Dommaraju, S.R.3
Hor, L.4
Hutton, C.A.5
Gerrard, J.A.6
Dobson, R.C.J.7
Perugini, M.A.8
-
3
-
-
84865655739
-
-
(Ekinci, D., ed), InTech Open Access Publisher, Rijeka, Croatia
-
Dogovski, C., Atkinson, S. C., Dommaraju, S. R., Downton, M., Hor, L., Moore, S., Paxman, J. J., Peverelli, M. G., Qiu, T. W., Reumann, M., Siddiqui, T., Taylor, N. L., Wagner, J., Wubben, J. M., and Perugini, M. A. (2012) in Biochemistry (Ekinci, D., ed) pp. 225-262, InTech Open Access Publisher, Rijeka, Croatia
-
(2012)
Biochemistry
, pp. 225-262
-
-
Dogovski, C.1
Atkinson, S.C.2
Dommaraju, S.R.3
Downton, M.4
Hor, L.5
Moore, S.6
Paxman, J.J.7
Peverelli, M.G.8
Qiu, T.W.9
Reumann, M.10
Siddiqui, T.11
Taylor, N.L.12
Wagner, J.13
Wubben, J.M.14
Perugini, M.A.15
-
4
-
-
0038011891
-
Inhibitors of lysine biosynthesis as antibacterial agents
-
Hutton, C. A., Southwood, T. J., and Turner, J. J. (2003) Inhibitors of lysine biosynthesis as antibacterial agents. Mini Rev. Med. Chem. 3, 115-127
-
(2003)
Mini Rev. Med. Chem.
, vol.3
, pp. 115-127
-
-
Hutton, C.A.1
Southwood, T.J.2
Turner, J.J.3
-
5
-
-
0034076849
-
Bacterial diaminopimelate metabolism as a target for antibiotic design
-
Cox, R. J., Sutherland, A., and Vederas, J. C. (2000) Bacterial diaminopimelate metabolism as a target for antibiotic design. Bioorg. Med. Chem. 8, 843-871
-
(2000)
Bioorg. Med. Chem.
, vol.8
, pp. 843-871
-
-
Cox, R.J.1
Sutherland, A.2
Vederas, J.C.3
-
6
-
-
0039697397
-
The stereoisomers of diaminopimelic acid
-
Antia, M., Hoare, D. S., and Work, E. (1957) The stereoisomers of diaminopimelic acid. Biochem. J. 65, 448-459
-
(1957)
Biochem. J.
, vol.65
, pp. 448-459
-
-
Antia, M.1
Hoare, D.S.2
Work, E.3
-
7
-
-
0021135333
-
Purification and properties of diaminopimelic acid epimerase from
-
Wiseman, J. S., and Nichols, J. S. (1984) Purification and properties of diaminopimelic acid epimerase from Escherichia coli. J. Biol. Chem. 259, 8907-8914
-
(1984)
Escherichia Coli. J. Biol. Chem.
, vol.259
, pp. 8907-8914
-
-
Wiseman, J.S.1
Nichols, J.S.2
-
8
-
-
33745029007
-
Structural insights into stereochemical inversion by diaminopimelate epimerase: An antibacterial drug target
-
Pillai, B., Cherney, M. M., Diaper, C. M., Sutherland, A., Blanchard, J. S., Vederas, J. C., and James, M. N. (2006) Structural insights into stereochemical inversion by diaminopimelate epimerase: an antibacterial drug target. Proc. Natl. Acad. Sci. U.S.A. 103, 8668-8673
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 8668-8673
-
-
Pillai, B.1
Cherney, M.M.2
Diaper, C.M.3
Sutherland, A.4
Blanchard, J.S.5
Vederas, J.C.6
James, M.N.7
-
9
-
-
0032564314
-
Structural symmetry: The three-dimensional structure of Haemophilus influenzae diaminopimelate epimerase
-
Cirilli, M., Zheng, R., Scapin, G., and Blanchard, J. S. (1998) Structural symmetry: the three-dimensional structure of Haemophilus influenzae diaminopimelate epimerase. Biochemistry 37, 16452-16458
-
(1998)
Biochemistry
, vol.37
, pp. 16452-16458
-
-
Cirilli, M.1
Zheng, R.2
Scapin, G.3
Blanchard, J.S.4
-
10
-
-
4644249050
-
Refinement of Haemophilus influenzae diaminopimelic acid epimerase (DapF) at 1.75 Å resolution suggests a mechanism for stereocontrol during catalysis
-
Lloyd, A. J., Huyton, T., Turkenburg, J., and Roper, D. I. (2004) Refinement of Haemophilus influenzae diaminopimelic acid epimerase (DapF) at 1.75 Å resolution suggests a mechanism for stereocontrol during catalysis. Acta Crystallogr. D Biol. Crystallogr. 60, 397-400
-
(2004)
Acta Crystallogr. D Biol. Crystallogr.
, vol.60
, pp. 397-400
-
-
Lloyd, A.J.1
Huyton, T.2
Turkenburg, J.3
Roper, D.I.4
-
11
-
-
63149100467
-
Structure of the diaminopimelate epimerase DapF from Mycobacterium tuberculosis
-
Usha, V., Dover, L. G., Roper, D. I., Fütterer, K., and Besra, G. S. (2009) Structure of the diaminopimelate epimerase DapF from Mycobacterium tuberculosis. Acta Crystallogr. D Biol. Crystallogr. 65, 383-387
-
(2009)
Acta Crystallogr. D Biol. Crystallogr.
, vol.65
, pp. 383-387
-
-
Usha, V.1
Dover, L.G.2
Roper, D.I.3
Fütterer, K.4
Besra, G.S.5
-
12
-
-
58149085963
-
Crystal structure of diaminopimelate epimerase from Arabidopsis thaliana, an amino acid racemase critical for L-lysine biosynthesis
-
Pillai, B., Moorthie, V. A., van Belkum, M. J., Marcus, S. L., Cherney, M. M., Diaper, C. M., Vederas, J. C., and James, M. N. (2009) Crystal structure of diaminopimelate epimerase from Arabidopsis thaliana, an amino acid racemase critical for L-lysine biosynthesis. J. Mol. Biol. 385, 580-594
-
(2009)
J. Mol. Biol.
, vol.385
, pp. 580-594
-
-
Pillai, B.1
Moorthie, V.A.2
Van Belkum, M.J.3
Marcus, S.L.4
Cherney, M.M.5
Diaper, C.M.6
Vederas, J.C.7
James, M.N.8
-
13
-
-
32444448479
-
Crystal structure, catalytic mechanism, and mitogenic properties of Trypanosoma cruzi proline racemase
-
Buschiazzo, A., Goytia, M., Schaeffer, F., Degrave, W., Shepard, W., Grégoire, C., Chamond, N., Cosson, A., Berneman, A., Coatnoan, N., Alzari, P. M., and Minoprio, P. (2006) Crystal structure, catalytic mechanism, and mitogenic properties of Trypanosoma cruzi proline racemase. Proc. Natl. Acad. Sci. U.S.A. 103, 1705-1710
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 1705-1710
-
-
Buschiazzo, A.1
Goytia, M.2
Schaeffer, F.3
Degrave, W.4
Shepard, W.5
Grégoire, C.6
Chamond, N.7
Cosson, A.8
Berneman, A.9
Coatnoan, N.10
Alzari, P.M.11
Minoprio, P.12
-
14
-
-
34250859670
-
The three-dimensional crystal structure of the PrpF protein of Shewanella oneidensis complexed with trans-aconitate: Insights into its biological function
-
Garvey, G. S., Rocco, C. J., Escalante-Semerena, J. C., and Rayment, I. (2007) The three-dimensional crystal structure of the PrpF protein of Shewanella oneidensis complexed with trans-aconitate: insights into its biological function. Protein Sci. 16, 1274-1284
-
(2007)
Protein Sci.
, vol.16
, pp. 1274-1284
-
-
Garvey, G.S.1
Rocco, C.J.2
Escalante-Semerena, J.C.3
Rayment, I.4
-
15
-
-
4744365340
-
Structure and function of the phenazine biosynthesis protein PhzF from Pseudomonas fluorescens 2-79
-
Parsons, J. F., Song, F., Parsons, L., Calabrese, K., Eisenstein, E., and Ladner, J. E. (2004) Structure and function of the phenazine biosynthesis protein PhzF from Pseudomonas fluorescens 2-79. Biochemistry 43, 12427-12435
-
(2004)
Biochemistry
, vol.43
, pp. 12427-12435
-
-
Parsons, J.F.1
Song, F.2
Parsons, L.3
Calabrese, K.4
Eisenstein, E.5
Ladner, J.E.6
-
16
-
-
67651149462
-
Crystal structure and putative mechanism of 3-methylitaconate-Δ- isomerase from Eubacterium barkeri
-
Velarde, M., Macieira, S., Hilberg, M., Bröker, G., Tu, S.-M., Golding, B. T., Pierik, A. J., Buckel, W., and Messerschmidt, A. (2009) Crystal structure and putative mechanism of 3-methylitaconate-Δ-isomerase from Eubacterium barkeri. J. Mol. Biol. 391, 609-620
-
(2009)
J. Mol. Biol.
, vol.391
, pp. 609-620
-
-
Velarde, M.1
Macieira, S.2
Hilberg, M.3
Bröker, G.4
Tu, S.-M.5
Golding, B.T.6
Pierik, A.J.7
Buckel, W.8
Messerschmidt, A.9
-
17
-
-
9344256709
-
Structure and function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens
-
Blankenfeldt, W., Kuzin, A. P., Skarina, T., Korniyenko, Y., Tong, L., Bayer, P., Janning, P., Thomashow, L. S., and Mavrodi, D. V. (2004) Structure and function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens. Proc. Natl. Acad. Sci. U.S.A. 101, 16431-16436
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 16431-16436
-
-
Blankenfeldt, W.1
Kuzin, A.P.2
Skarina, T.3
Korniyenko, Y.4
Tong, L.5
Bayer, P.6
Janning, P.7
Thomashow, L.S.8
Mavrodi, D.V.9
-
18
-
-
2442451688
-
Crystal structure of E. coli yddE protein reveals a striking homology with diaminopimelate epimerase
-
Grassick, A., Sulzenbacher, G., Roig-Zamboni, V., Campanacci, V., Cambillau, C., and Bourne, Y. (2004) Crystal structure of E. coli yddE protein reveals a striking homology with diaminopimelate epimerase. Proteins 55, 764-767
-
(2004)
Proteins
, vol.55
, pp. 764-767
-
-
Grassick, A.1
Sulzenbacher, G.2
Roig-Zamboni, V.3
Campanacci, V.4
Cambillau, C.5
Bourne, Y.6
-
19
-
-
24644521523
-
Crystal structure of YHI9, the yeast member of the phenazine biosynthesis PhzF enzyme superfamily
-
Liger, D., Quevillon-Cheruel, S., Sorel, I., Bremang, M., Blondeau, K., Aboulfath, I., Janin, J., van Tilbeurgh, H., and Leulliot, N. (2005) Crystal structure of YHI9, the yeast member of the phenazine biosynthesis PhzF enzyme superfamily. Proteins 60, 778-786
-
(2005)
Proteins
, vol.60
, pp. 778-786
-
-
Liger, D.1
Quevillon-Cheruel, S.2
Sorel, I.3
Bremang, M.4
Blondeau, K.5
Aboulfath, I.6
Janin, J.7
Van Tilbeurgh, H.8
Leulliot, N.9
-
20
-
-
34548232365
-
Inference of macromolecular assemblies from crystalline state
-
Krissinel, E., and Henrick, K. (2007) Inference of macromolecular assemblies from crystalline state. J. Mol. Biol. 372, 774-797
-
(2007)
J. Mol. Biol.
, vol.372
, pp. 774-797
-
-
Krissinel, E.1
Henrick, K.2
-
21
-
-
75149177101
-
Crystallization and preliminary X-ray diffraction analysis of diaminopimelate epimerase from Escherichia coli
-
Hor, L., Dobson, R. C., Dogovski, C., Hutton, C. A., and Perugini, M. A. (2010) Crystallization and preliminary X-ray diffraction analysis of diaminopimelate epimerase from Escherichia coli. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 66, 37-40
-
(2010)
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun.
, vol.66
, pp. 37-40
-
-
Hor, L.1
Dobson, R.C.2
Dogovski, C.3
Hutton, C.A.4
Perugini, M.A.5
-
22
-
-
14844294424
-
Protein production by auto-induction in high density shaking cultures
-
Studier, F. W. (2005) Protein production by auto-induction in high density shaking cultures. Protein Expr. Purif. 41, 207-234
-
(2005)
Protein Expr. Purif.
, vol.41
, pp. 207-234
-
-
Studier, F.W.1
-
23
-
-
55749094839
-
Irreversible inhibition of dihydrodipicolinate synthase by 4-oxo-heptenedioic acid analogues
-
Boughton, B. A., Griffin, M. D., O'Donnell, P. A., Dobson, R. C., Perugini, M. A., Gerrard, J. A., and Hutton, C. A. (2008) Irreversible inhibition of dihydrodipicolinate synthase by 4-oxo-heptenedioic acid analogues. Bioorg. Med. Chem. 16, 9975-9983
-
(2008)
Bioorg. Med. Chem.
, vol.16
, pp. 9975-9983
-
-
Boughton, B.A.1
Griffin, M.D.2
O'Donnell, P.A.3
Dobson, R.C.4
Perugini, M.A.5
Gerrard, J.A.6
Hutton, C.A.7
-
24
-
-
84858296060
-
1,3- Phenylene bis(ketoacid) derivatives as inhibitors of Escherichia coli dihydrodipicolinate synthase
-
Boughton, B. A., Hor, L., Gerrard, J. A., and Hutton, C. A. (2012) 1,3- Phenylene bis(ketoacid) derivatives as inhibitors of Escherichia coli dihydrodipicolinate synthase. Bioorg. Med. Chem. 20, 2419-2426
-
(2012)
Bioorg. Med. Chem.
, vol.20
, pp. 2419-2426
-
-
Boughton, B.A.1
Hor, L.2
Gerrard, J.A.3
Hutton, C.A.4
-
25
-
-
1842425027
-
Properties of GDP-mannose pyrophosphorylase, a critical enzyme and drug target in Leishmania mexicana
-
Davis, A. J., Perugini, M. A., Smith, B. J., Stewart, J. D., Ilg, T., Hodder, A. N., and Handman, E. (2004) Properties of GDP-mannose pyrophosphorylase, a critical enzyme and drug target in Leishmania mexicana. J. Biol. Chem. 279, 12462-12468
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 12462-12468
-
-
Davis, A.J.1
Perugini, M.A.2
Smith, B.J.3
Stewart, J.D.4
Ilg, T.5
Hodder, A.N.6
Handman, E.7
-
26
-
-
55549137411
-
Structure and evolution of a novel dimeric enzyme from a clinically-important bacterial pathogen
-
Burgess, B. R., Dobson, R. C., Bailey, M. F., Atkinson, S. C., Griffin, M. D., Jameson, G. B., Parker, M. W., Gerrard, J. A., and Perugini, M. A. (2008) Structure and evolution of a novel dimeric enzyme from a clinically-important bacterial pathogen. J. Biol. Chem. 283, 27598-27603
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 27598-27603
-
-
Burgess, B.R.1
Dobson, R.C.2
Bailey, M.F.3
Atkinson, S.C.4
Griffin, M.D.5
Jameson, G.B.6
Parker, M.W.7
Gerrard, J.A.8
Perugini, M.A.9
-
27
-
-
77949314517
-
Substrate-mediated stabilization of a tetrameric drug target reveals Achilles heel in anthrax
-
Voss, J. E., Scally, S. W., Taylor, N. L., Atkinson, S. C., Griffin, M. D., Hutton, C. A., Parker, M. W., Alderton, M. R., Gerrard, J. A., Dobson, R. C., Dogovski, C., and Perugini, M. A. (2010) Substrate-mediated stabilization of a tetrameric drug target reveals Achilles heel in anthrax. J. Biol. Chem. 285, 5188-5195
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 5188-5195
-
-
Voss, J.E.1
Scally, S.W.2
Taylor, N.L.3
Atkinson, S.C.4
Griffin, M.D.5
Hutton, C.A.6
Parker, M.W.7
Alderton, M.R.8
Gerrard, J.A.9
Dobson, R.C.10
Dogovski, C.11
Perugini, M.A.12
-
28
-
-
0034672325
-
Estimation of protein secondary structure from circular dichroism spectra: Comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set
-
Sreerama, N., and Woody, R. W. (2000) Estimation of protein secondary structure from circular dichroism spectra: comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set. Anal. Biochem. 287, 252-260
-
(2000)
Anal. Biochem.
, vol.287
, pp. 252-260
-
-
Sreerama, N.1
Woody, R.W.2
-
29
-
-
22844439302
-
Insight into the self-association of key enzymes from pathogenic species
-
Perugini, M. A., Griffin, M. D., Smith, B. J., Webb, L. E., Davis, A. J., Handman, E., and Gerrard, J. A. (2005) Insight into the self-association of key enzymes from pathogenic species. Eur. Biophys. J. 34, 469-476
-
(2005)
Eur. Biophys. J.
, vol.34
, pp. 469-476
-
-
Perugini, M.A.1
Griffin, M.D.2
Smith, B.J.3
Webb, L.E.4
Davis, A.J.5
Handman, E.6
Gerrard, J.A.7
-
30
-
-
0034711265
-
Self-association of human apolipoprotein E3 and E4 in the presence and absence of phospholipid
-
Perugini, M. A., Schuck, P., and Howlett, G. J. (2000) Self-association of human apolipoprotein E3 and E4 in the presence and absence of phospholipid. J. Biol. Chem. 275, 36758-36765
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 36758-36765
-
-
Perugini, M.A.1
Schuck, P.2
Howlett, G.J.3
-
31
-
-
0034009520
-
Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling
-
Schuck, P. (2000) Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling. Biophys. J. 78, 1606-1619
-
(2000)
Biophys. J.
, vol.78
, pp. 1606-1619
-
-
Schuck, P.1
-
32
-
-
8844265931
-
Sedimentation velocity analysis of highly heterogeneous systems
-
Demeler, B., and van Holde, K. E. (2004) Sedimentation velocity analysis of highly heterogeneous systems. Anal. Biochem. 335, 279-288
-
(2004)
Anal. Biochem.
, vol.335
, pp. 279-288
-
-
Demeler, B.1
Van Holde, K.E.2
-
33
-
-
33744816438
-
-
(Scott, D. J., Harding, S. E., and Rowe, A. J., eds), The Royal Society of Chemistry, Cambridge, UK
-
Demeler, B. (2005) in Analytical Ultracentrifugation: Techniques and Methods (Scott, D. J., Harding, S. E., and Rowe, A. J., eds) pp. 210-230, The Royal Society of Chemistry, Cambridge, UK
-
(2005)
Analytical Ultracentrifugation: Techniques and Methods
, pp. 210-230
-
-
Demeler, B.1
-
34
-
-
34548068467
-
-
(Buehler, L., and Rashdid, H., eds) 2nd Ed. CRC Press, Boca Raton, FL
-
Demeler, B. (2005) in Bioinformatics Basics: Applications in Biological Science and Medicine (Buehler, L., and Rashdid, H., eds) 2nd Ed., pp. 226-255, CRC Press, Boca Raton, FL
-
(2005)
Bioinformatics Basics: Applications in Biological Science and Medicine
, pp. 226-255
-
-
Demeler, B.1
-
35
-
-
1442274756
-
Sedimentation equilibrium analysis of protein interactions with global implicit mass conservation constraints and systematic noise decomposition
-
Vistica, J., Dam, J., Balbo, A., Yikilmaz, E., Mariuzza, R. A., Rouault, T. A., and Schuck, P. (2004) Sedimentation equilibrium analysis of protein interactions with global implicit mass conservation constraints and systematic noise decomposition. Anal. Biochem. 326, 234-256
-
(2004)
Anal. Biochem.
, vol.326
, pp. 234-256
-
-
Vistica, J.1
Dam, J.2
Balbo, A.3
Yikilmaz, E.4
Mariuzza, R.A.5
Rouault, T.A.6
Schuck, P.7
-
36
-
-
77954574008
-
Developments in the USSOMO bead modeling suite: New features in the direct residue-to-bead method, improved grid routines, and influence of accessible surface area screening
-
Brookes, E., Demeler, B., and Rocco, M. (2010) Developments in the USSOMO bead modeling suite: new features in the direct residue-to-bead method, improved grid routines, and influence of accessible surface area screening. Macromol. Biosci. 10, 746-753
-
(2010)
Macromol. Biosci.
, vol.10
, pp. 746-753
-
-
Brookes, E.1
Demeler, B.2
Rocco, M.3
-
37
-
-
77950552976
-
The implementation of SOMO (SOlution MOdeller) in the UltraScan analytical ultracentrifugation data analysis suite: Enhanced capabilities allow the reliable hydrodynamic modeling of virtually any kind of biomacromolecule
-
Brookes, E., Demeler, B., Rosano, C., and Rocco, M. (2010) The implementation of SOMO (SOlution MOdeller) in the UltraScan analytical ultracentrifugation data analysis suite: enhanced capabilities allow the reliable hydrodynamic modeling of virtually any kind of biomacromolecule. Eur. Biophys. J. 39, 423-435
-
(2010)
Eur. Biophys. J.
, vol.39
, pp. 423-435
-
-
Brookes, E.1
Demeler, B.2
Rosano, C.3
Rocco, M.4
-
38
-
-
0036009994
-
Synthesis and in vitro enzyme activity of an oxa analogue of azi-DAP
-
Cox, R. J., Durston, J., and Roper, D. I. (2002) Synthesis and in vitro enzyme activity of an oxa analogue of azi-DAP. J. Chem. Soc. Perkin 1. 1, 1029-1035
-
(2002)
J. Chem. Soc. Perkin
, vol.1
, Issue.1
, pp. 1029-1035
-
-
Cox, R.J.1
Durston, J.2
Roper, D.I.3
-
39
-
-
0002414103
-
-
Oxford University Press, Inc., Oxford, UK
-
Leslie, A. G. W. (1991) in Crystallographic Computing 5: from Chemistry to Biology: Papers Presented at the International School in Crystallographic Computing Held at Bischenberg, France, July 29-August 5, 1990, pp. 50-61, Oxford University Press, Inc., Oxford, UK
-
(1991)
Crystallographic Computing 5: From Chemistry to Biology: Papers Presented at the International School in Crystallographic Computing Held at Bischenberg, France, July 29-August 5, 1990
, pp. 50-61
-
-
Leslie, A.G.W.1
-
40
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project Number 4
-
Collaborative Computational Project, Number 4 (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr.DBiol. Crystallogr. 50, 760-763
-
(1994)
Acta Crystallogr.DBiol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
41
-
-
34447508216
-
Phaser crystallographic software
-
McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C., and Read, R. J. (2007) Phaser crystallographic software. J. Appl. Crystallogr. 40, 658-674
-
(2007)
J. Appl. Crystallogr.
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
42
-
-
77949535720
-
Features and development of Coot
-
Emsley, P., Lohkamp, B., Scott, W. G., and Cowtan, K. (2010) Features and development of Coot. Acta Crystallogr. D Biol. Crystallogr. 66, 486-501
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
43
-
-
0013461295
-
Macromolecular TLS refinement in REFMAC at moderate resolutions
-
Winn, M. D., Murshudov, G. N., and Papiz, M. Z. (2003) Macromolecular TLS refinement in REFMAC at moderate resolutions. Methods Enzymol. 374, 300-321
-
(2003)
Methods Enzymol.
, vol.374
, pp. 300-321
-
-
Winn, M.D.1
Murshudov, G.N.2
Papiz, M.Z.3
-
44
-
-
33646260450
-
Optimal description of a protein structure in terms of multiple groups undergoing TLS motion
-
Painter, J., and Merritt, E. A. (2006) Optimal description of a protein structure in terms of multiple groups undergoing TLS motion. Acta Crystallogr. D Biol. Crystallogr. 62, 439-450
-
(2006)
Acta Crystallogr. D Biol. Crystallogr.
, vol.62
, pp. 439-450
-
-
Painter, J.1
Merritt, E.A.2
-
45
-
-
33645158291
-
TLSMD web server for the generation of multi-group TLS models
-
Painter, J., and Merritt, E. A. (2006) TLSMD web server for the generation of multi-group TLS models. J. Appl. Crystallogr. 39, 109-111
-
(2006)
J. Appl. Crystallogr.
, vol.39
, pp. 109-111
-
-
Painter, J.1
Merritt, E.A.2
-
46
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen, V. B., Arendall, W. B., 3rd, Headd, J. J., Keedy, D. A., Immormino, R. M., Kapral, G. J., Murray, L. W., Richardson, J. S., and Richardson, D. C. (2010) MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr. D Biol. Crystallogr. 66, 12-21
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
Arendall, W.B.2
Headd III, J.J.3
Keedy, D.A.4
Immormino, R.M.5
Kapral, G.J.6
Murray, L.W.7
Richardson, J.S.8
Richardson, D.C.9
-
47
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
Phillips, J. C., Braun, R., Wang, W., Gumbart, J., Tajkhorshid, E., Villa, E., Chipot, C., Skeel, R. D., Kalé, L., and Schulten, K. (2005) Scalable molecular dynamics with NAMD. J. Comput. Chem. 26, 1781-1802
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kalé, L.9
Schulten, K.10
-
48
-
-
0041784950
-
All-atom empirical potential for molecular modeling and dynamics studies of proteins
-
MacKerell, A. D., Bashford, D., Bellott, Dunbrack, R. L., Evanseck, J. D., Field, M. J., Fischer, S., Gao, J., Guo, H., Ha, S., Joseph-McCarthy, D., Kuchnir, L., Kuczera, K., Lau, F. T. K., Mattos, C., Michnick, S., Ngo, T., Nguyen, D. T., Prodhom, B., Reiher, W. E., Roux, B., Schlenkrich, M., Smith, J. C., Stote, R., Straub, J., Watanabe, M., Wiórkiewicz-Kuczera, J., Yin, D., and Karplus, M. (1998) All-atom empirical potential for molecular modeling and dynamics studies of proteins. J. Phys. Chem. B 102, 3586-3616
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 3586-3616
-
-
Mackerell, A.D.1
Bashford, D.2
Bellott3
Dunbrack, R.L.4
Evanseck, J.D.5
Field, M.J.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
Joseph-Mccarthy, D.11
Kuchnir, L.12
Kuczera, K.13
Lau, F.T.K.14
Mattos, C.15
Michnick, S.16
Ngo, T.17
Nguyen, D.T.18
Prodhom, B.19
Reiher, W.E.20
Roux, B.21
Schlenkrich, M.22
Smith, J.C.23
Stote, R.24
Straub, J.25
Watanabe, M.26
Wiórkiewicz- Kuczera, J.27
Yin, D.28
Karplus, M.29
more..
-
49
-
-
0035816224
-
Structure, dynamics and electrostatics of the active site of glutaredoxin 3 from Escherichia coli: Comparison with functionally related proteins
-
Foloppe, N., Sagemark, J., Nordstrand, K., Berndt, K. D., and Nilsson, L. (2001) Structure, dynamics and electrostatics of the active site of glutaredoxin 3 from Escherichia coli: comparison with functionally related proteins. J. Mol. Biol. 310, 449-470
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 449-470
-
-
Foloppe, N.1
Sagemark, J.2
Nordstrand, K.3
Berndt, K.D.4
Nilsson, L.5
-
50
-
-
0036154258
-
Size-distribution analysis of proteins by analytical ultracentrif- ugation: Strategies and application to model systems
-
Schuck, P., Perugini, M. A., Gonzales, N. R., Howlett, G. J., and Schubert, D. (2002) Size-distribution analysis of proteins by analytical ultracentrif- ugation: strategies and application to model systems. Biophys. J. 82, 1096-1111
-
(2002)
Biophys. J.
, vol.82
, pp. 1096-1111
-
-
Schuck, P.1
Perugini, M.A.2
Gonzales, N.R.3
Howlett, G.J.4
Schubert, D.5
-
51
-
-
34848903257
-
Dynamics of catalysis revealed from the crystal structures of mutants of diaminopimelate epimerase
-
Pillai, B., Cherney, M., Diaper, C. M., Sutherland, A., Blanchard, J. S., Vederas, J. C., and James, M. N. (2007) Dynamics of catalysis revealed from the crystal structures of mutants of diaminopimelate epimerase. Biochem. Biophys. Res. Commun. 363, 547-553
-
(2007)
Biochem. Biophys. Res. Commun.
, vol.363
, pp. 547-553
-
-
Pillai, B.1
Cherney, M.2
Diaper, C.M.3
Sutherland, A.4
Blanchard, J.S.5
Vederas, J.C.6
James, M.N.7
-
52
-
-
0033528712
-
Chemical mechanism of Haemophilus influenzae diaminopimelate epimerase
-
Koo, C. W., and Blanchard, J. S. (1999) Chemical mechanism of Haemophilus influenzae diaminopimelate epimerase. Biochemistry 38, 4416-4422
-
(1999)
Biochemistry
, vol.38
, pp. 4416-4422
-
-
Koo, C.W.1
Blanchard, J.S.2
-
53
-
-
77950662472
-
Homodimeric enzymes as drug targets
-
Cardinale, D., Salo-Ahen, O. M., Ferrari, S., Ponterini, G., Cruciani, G., Carosati, E., Tochowicz, A. M., Mangani, S., Wade, R. C., and Costi, M. P. (2010) Homodimeric enzymes as drug targets. Curr. Med. Chem. 17, 826-846
-
(2010)
Curr. Med. Chem.
, vol.17
, pp. 826-846
-
-
Cardinale, D.1
Salo-Ahen, O.M.2
Ferrari, S.3
Ponterini, G.4
Cruciani, G.5
Carosati, E.6
Tochowicz, A.M.7
Mangani, S.8
Wade, R.C.9
Costi, M.P.10
-
54
-
-
37249004920
-
Reaching for high-hanging fruit in drug discovery at protein-protein interfaces
-
Wells, J. A., and McClendon, C. L. (2007) Reaching for high-hanging fruit in drug discovery at protein-protein interfaces. Nature 450, 1001-1009
-
(2007)
Nature
, vol.450
, pp. 1001-1009
-
-
Wells, J.A.1
McClendon, C.L.2
-
55
-
-
33847778677
-
Inhibiting proteinprotein interactions as an emerging paradigm for drug discovery
-
Gerrard, J. A., Hutton, C. A., and Perugini, M. A. (2007) Inhibiting proteinprotein interactions as an emerging paradigm for drug discovery. Mini Rev. Med. Chem. 7, 151-157
-
(2007)
Mini Rev. Med. Chem.
, vol.7
, pp. 151-157
-
-
Gerrard, J.A.1
Hutton, C.A.2
Perugini, M.A.3
|