-
1
-
-
0037004052
-
New insights into the regulation and functional significance of lysine metabolism in plants
-
Galili G. New insights into the regulation and functional significance of lysine metabolism in plants. Annu. Rev. Plant Biol. 53 (2002) 27-43
-
(2002)
Annu. Rev. Plant Biol.
, vol.53
, pp. 27-43
-
-
Galili, G.1
-
2
-
-
23144444094
-
Are high-lysine cereal crops still a challenge?
-
Ferreira R.R., Varisi V.A., Meinhardt L.W., Lea P.J., and Azevedo R.A. Are high-lysine cereal crops still a challenge?. Braz. J. Med. Biol. Res. 38 (2005) 985-994
-
(2005)
Braz. J. Med. Biol. Res.
, vol.38
, pp. 985-994
-
-
Ferreira, R.R.1
Varisi, V.A.2
Meinhardt, L.W.3
Lea, P.J.4
Azevedo, R.A.5
-
3
-
-
36849093996
-
Modifying lysine biosynthesis and catabolism in corn with a single bifunctional expression/silencing transgene cassette
-
Frizzi A., Huang S., Gilbertson L.A., Armstrong T.A., Luethy M.H., and Malvar T.M. Modifying lysine biosynthesis and catabolism in corn with a single bifunctional expression/silencing transgene cassette. Plant Biotechnol. J. 6 (2008) 13-21
-
(2008)
Plant Biotechnol. J.
, vol.6
, pp. 13-21
-
-
Frizzi, A.1
Huang, S.2
Gilbertson, L.A.3
Armstrong, T.A.4
Luethy, M.H.5
Malvar, T.M.6
-
4
-
-
0034076849
-
Bacterial diaminopimelate metabolism as a target for antibiotic design
-
Cox R.J., Sutherland A., and Vederas J.C. Bacterial diaminopimelate metabolism as a target for antibiotic design. Bioorg. Med. Chem. 8 (2000) 843-887
-
(2000)
Bioorg. Med. Chem.
, vol.8
, pp. 843-887
-
-
Cox, R.J.1
Sutherland, A.2
Vederas, J.C.3
-
5
-
-
33847633444
-
Diaminopimelate and lysine biosynthesis-an antimicrobial target in bacteria
-
Vederas J.C. Diaminopimelate and lysine biosynthesis-an antimicrobial target in bacteria. Can. J. Chem. 84 (2006) 1197-1207
-
(2006)
Can. J. Chem.
, vol.84
, pp. 1197-1207
-
-
Vederas, J.C.1
-
6
-
-
34250692637
-
Inhibition of lysine biosynthesis: an evolving antibiotic strategy
-
Hutton C.A., Perugini M.A., and Gerrard J.A. Inhibition of lysine biosynthesis: an evolving antibiotic strategy. Mol. Biosyst. 3 (2007) 458-465
-
(2007)
Mol. Biosyst.
, vol.3
, pp. 458-465
-
-
Hutton, C.A.1
Perugini, M.A.2
Gerrard, J.A.3
-
7
-
-
11844302399
-
On biochemical evolution: lysine formation in higher plants
-
Vogel H.J. On biochemical evolution: lysine formation in higher plants. Proc. Natl Acad. Sci. USA 45 (1959) 1717-1721
-
(1959)
Proc. Natl Acad. Sci. USA
, vol.45
, pp. 1717-1721
-
-
Vogel, H.J.1
-
8
-
-
0036789272
-
Molecular evolution of the lysine biosynthetic pathways
-
Velasco A.M., Leguina J.I., and Lazcano A. Molecular evolution of the lysine biosynthetic pathways. J. Mol. Evol. 55 (2002) 445-459
-
(2002)
J. Mol. Evol.
, vol.55
, pp. 445-459
-
-
Velasco, A.M.1
Leguina, J.I.2
Lazcano, A.3
-
9
-
-
11844255688
-
Biosynthesis of lysine in plants: evidence for a variant of the known bacterial pathways
-
Hudson A.O., Bless C., Macedo P., Chatterjee S.P., Singh B.K., Gilvarg C., and Leustek T. Biosynthesis of lysine in plants: evidence for a variant of the known bacterial pathways. Biochim. Biophys. Acta 1721 (2005) 27-36
-
(2005)
Biochim. Biophys. Acta
, vol.1721
, pp. 27-36
-
-
Hudson, A.O.1
Bless, C.2
Macedo, P.3
Chatterjee, S.P.4
Singh, B.K.5
Gilvarg, C.6
Leustek, T.7
-
10
-
-
33645808723
-
An ll-diaminopimelate aminotransferase defines a novel variant of the lysine biosynthesis pathway in plants
-
Hudson A.O., Singh B.K., Leustek T., and Gilvarg C. An ll-diaminopimelate aminotransferase defines a novel variant of the lysine biosynthesis pathway in plants. Plant Physiol. 140 (2006) 292-301
-
(2006)
Plant Physiol.
, vol.140
, pp. 292-301
-
-
Hudson, A.O.1
Singh, B.K.2
Leustek, T.3
Gilvarg, C.4
-
11
-
-
33845221534
-
l,l-Diaminopimelate aminotransferase, a trans-kingdom enzyme shared by Chlamydia and plants for synthesis of diaminopimelate/lysine
-
McCoy A.J., Adams N.E., Hudson A.O., Gilvarg C., Leustek T., and Maurelli A.T. l,l-Diaminopimelate aminotransferase, a trans-kingdom enzyme shared by Chlamydia and plants for synthesis of diaminopimelate/lysine. Proc. Natl Acad. Sci. USA 103 (2006) 17909-17914
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 17909-17914
-
-
McCoy, A.J.1
Adams, N.E.2
Hudson, A.O.3
Gilvarg, C.4
Leustek, T.5
Maurelli, A.T.6
-
12
-
-
0000705899
-
N-Succinyl-l-2,6-diaminopimelic acid deacylase
-
Kindler S.H., and Gilvarg C. N-Succinyl-l-2,6-diaminopimelic acid deacylase. J. Biol. Chem. 235 (1960) 3532-3535
-
(1960)
J. Biol. Chem.
, vol.235
, pp. 3532-3535
-
-
Kindler, S.H.1
Gilvarg, C.2
-
13
-
-
0014705659
-
Bacterial distribution of the use of succinyl and acetyl blocking groups in diaminopimelic acid biosynthesis
-
Weinberger S., and Gilvarg C. Bacterial distribution of the use of succinyl and acetyl blocking groups in diaminopimelic acid biosynthesis. J. Bacteriol. 101 (1970) 323-332
-
(1970)
J. Bacteriol.
, vol.101
, pp. 323-332
-
-
Weinberger, S.1
Gilvarg, C.2
-
14
-
-
34447618073
-
Crystal structure of ll-diaminopimelate aminotransferase from Arabidopsis thaliana: a recently discovered enzyme in the biosynthesis of l-lysine by plants and Chlamydia
-
Watanabe N., Cherney M.M., van Belkum M.J., Marcus S.L., Flegel M.D., Clay M.D., et al. Crystal structure of ll-diaminopimelate aminotransferase from Arabidopsis thaliana: a recently discovered enzyme in the biosynthesis of l-lysine by plants and Chlamydia. J. Mol. Biol. 371 (2007) 685-702
-
(2007)
J. Mol. Biol.
, vol.371
, pp. 685-702
-
-
Watanabe, N.1
Cherney, M.M.2
van Belkum, M.J.3
Marcus, S.L.4
Flegel, M.D.5
Clay, M.D.6
-
15
-
-
0012877147
-
Formation and function of d-amino acids in plants.
-
Gamburg K.Z., and Rekoslavskaya N.I. Formation and function of d-amino acids in plants. Soviet Plant Physiol. 38 (1991) 904-912
-
(1991)
Soviet Plant Physiol.
, vol.38
, pp. 904-912
-
-
Gamburg, K.Z.1
Rekoslavskaya, N.I.2
-
16
-
-
33747087913
-
Alanine racemase of alfalfa seedlings (Medicago sativa L.): first evidence for the presence of an amino acid racemase in plants
-
Ono K., Yanagida K., Oikawa T., Ogawa T., and Soda K. Alanine racemase of alfalfa seedlings (Medicago sativa L.): first evidence for the presence of an amino acid racemase in plants. Phytochemistry 67 (2006) 856-860
-
(2006)
Phytochemistry
, vol.67
, pp. 856-860
-
-
Ono, K.1
Yanagida, K.2
Oikawa, T.3
Ogawa, T.4
Soda, K.5
-
17
-
-
33645097865
-
Molecular and biochemical characterization of a serine racemase from Arabidopsis thaliana
-
Fujitani Y., Nakajima N., Ishihara K., Oikawa T., Ito K., and Sugimoto M. Molecular and biochemical characterization of a serine racemase from Arabidopsis thaliana. Phytochemistry 67 (2006) 668-674
-
(2006)
Phytochemistry
, vol.67
, pp. 668-674
-
-
Fujitani, Y.1
Nakajima, N.2
Ishihara, K.3
Oikawa, T.4
Ito, K.5
Sugimoto, M.6
-
18
-
-
0032915050
-
Structure and mechanism of glutamate racemase from Aquifex pyrophilus
-
Hwang K.Y., Cho C.S., Kim S.S., Sung H.C., Yu Y.G., and Cho Y. Structure and mechanism of glutamate racemase from Aquifex pyrophilus. Nat. Struct. Biol. 6 (1999) 422-426
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 422-426
-
-
Hwang, K.Y.1
Cho, C.S.2
Kim, S.S.3
Sung, H.C.4
Yu, Y.G.5
Cho, Y.6
-
19
-
-
27644453362
-
Substrate-induced conformational changes in Bacillus subtilis glutamate racemase and their implications for drug discovery
-
Ruzheinikov S., Taal M., Sedelnikova S., Baker P., and Rice D. Substrate-induced conformational changes in Bacillus subtilis glutamate racemase and their implications for drug discovery. Structure 13 (2005) 1707-1713
-
(2005)
Structure
, vol.13
, pp. 1707-1713
-
-
Ruzheinikov, S.1
Taal, M.2
Sedelnikova, S.3
Baker, P.4
Rice, D.5
-
20
-
-
34547932250
-
Structural basis for glutamate racemase inhibition
-
Kim K.H., Bong Y.J., Park J.K., Shin K.J., Hwang K.Y., and Kim E.E. Structural basis for glutamate racemase inhibition. J. Mol. Biol. 372 (2007) 434-443
-
(2007)
J. Mol. Biol.
, vol.372
, pp. 434-443
-
-
Kim, K.H.1
Bong, Y.J.2
Park, J.K.3
Shin, K.J.4
Hwang, K.Y.5
Kim, E.E.6
-
21
-
-
34547557316
-
Structural and functional analysis of two glutamate racemase isozymes from Bacillus anthracis and implications for inhibitor design
-
May M., Mehboob S., Mulhearn D.C., Wang Z., Yu H., Thatcher G.R., et al. Structural and functional analysis of two glutamate racemase isozymes from Bacillus anthracis and implications for inhibitor design. J. Mol. Biol. 371 (2007) 1219-1237
-
(2007)
J. Mol. Biol.
, vol.371
, pp. 1219-1237
-
-
May, M.1
Mehboob, S.2
Mulhearn, D.C.3
Wang, Z.4
Yu, H.5
Thatcher, G.R.6
-
22
-
-
34250356440
-
Exploitation of structural and regulatory diversity in glutamate racemases
-
Lundqvist T., Fisher S.L., Kern G., Folmer R.H., Xue Y., Newton D.T., et al. Exploitation of structural and regulatory diversity in glutamate racemases. Nature 447 (2007) 817-822
-
(2007)
Nature
, vol.447
, pp. 817-822
-
-
Lundqvist, T.1
Fisher, S.L.2
Kern, G.3
Folmer, R.H.4
Xue, Y.5
Newton, D.T.6
-
23
-
-
0036301494
-
Crystal structure of aspartate racemase from Pyrococcus horikoshii OT3 and its implications for molecular mechanism of PLP-independent racemization
-
Liu L., Iwata K., Kita A., Kawarabayasi Y., Yohda M., and Miki K. Crystal structure of aspartate racemase from Pyrococcus horikoshii OT3 and its implications for molecular mechanism of PLP-independent racemization. J. Mol. Biol. 319 (2002) 479-489
-
(2002)
J. Mol. Biol.
, vol.319
, pp. 479-489
-
-
Liu, L.1
Iwata, K.2
Kita, A.3
Kawarabayasi, Y.4
Yohda, M.5
Miki, K.6
-
24
-
-
39749166287
-
Structure of aspartate racemase complexed with a dual substrate analogue, citric acid, and implications for the reaction mechanism
-
Ohtaki A., Nakano Y., Iizuka R., Arakawa T., Yamada K., Odaka M., and Yohda M. Structure of aspartate racemase complexed with a dual substrate analogue, citric acid, and implications for the reaction mechanism. Proteins 70 (2008) 1167-1174
-
(2008)
Proteins
, vol.70
, pp. 1167-1174
-
-
Ohtaki, A.1
Nakano, Y.2
Iizuka, R.3
Arakawa, T.4
Yamada, K.5
Odaka, M.6
Yohda, M.7
-
25
-
-
32444448479
-
Crystal structure, catalytic mechanism, and mitogenic properties of Trypanosoma cruzi proline racemase
-
Buschiazzo A., Goytia M., Schaeffer F., Degrave W., Shepard W., Grgoire C., et al. Crystal structure, catalytic mechanism, and mitogenic properties of Trypanosoma cruzi proline racemase. Proc. Natl Acad. Sci. USA 103 (2006) 1705-1710
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 1705-1710
-
-
Buschiazzo, A.1
Goytia, M.2
Schaeffer, F.3
Degrave, W.4
Shepard, W.5
Grgoire, C.6
-
26
-
-
0032564314
-
Structural symmetry: the three-dimensional structure of Haemophilus influenzae diaminopimelate epimerase
-
Cirilli M., Zheng R., Scapin G., and Blanchard J.S. Structural symmetry: the three-dimensional structure of Haemophilus influenzae diaminopimelate epimerase. Biochemistry 37 (1998) 16452-16458
-
(1998)
Biochemistry
, vol.37
, pp. 16452-16458
-
-
Cirilli, M.1
Zheng, R.2
Scapin, G.3
Blanchard, J.S.4
-
27
-
-
4644249050
-
Refinement of Haemophilus influenzae diaminopimelic acid epimerase (DapF) at 1.75 Å resolution suggests a mechanism for stereocontrol during catalysis
-
Lloyd A.J., Huyton T., Turkenburg J., and Roper D.I. Refinement of Haemophilus influenzae diaminopimelic acid epimerase (DapF) at 1.75 Å resolution suggests a mechanism for stereocontrol during catalysis. Acta Crystallogr., Sect. D: Biol. Crystallogr. 60 (2004) 397-400
-
(2004)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.60
, pp. 397-400
-
-
Lloyd, A.J.1
Huyton, T.2
Turkenburg, J.3
Roper, D.I.4
-
28
-
-
29844436218
-
The stereoselective synthesis of aziridine analogues of diaminopimelic acid (DAP) and their interaction with DAP epimerase
-
Diaper C.M., Sutherland A., Pillai B., James M.N., Semchuk P., Blanchard J.S., and Vederas J.C. The stereoselective synthesis of aziridine analogues of diaminopimelic acid (DAP) and their interaction with DAP epimerase. Org. Biomol. Chem. 3 (2005) 4402-4411
-
(2005)
Org. Biomol. Chem.
, vol.3
, pp. 4402-4411
-
-
Diaper, C.M.1
Sutherland, A.2
Pillai, B.3
James, M.N.4
Semchuk, P.5
Blanchard, J.S.6
Vederas, J.C.7
-
29
-
-
33745029007
-
Structural insights into stereochemical inversion by diaminopimelate epimerase: an antibacterial drug target
-
Pillai B., Maia M.M., Diaper C.M., Sutherland A., Blanchard J.S., Vederas J.C., and James M.N.G. Structural insights into stereochemical inversion by diaminopimelate epimerase: an antibacterial drug target. Proc. Natl Acad. Sci. USA 103 (2006) 8668-8673
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 8668-8673
-
-
Pillai, B.1
Maia, M.M.2
Diaper, C.M.3
Sutherland, A.4
Blanchard, J.S.5
Vederas, J.C.6
James, M.N.G.7
-
30
-
-
34848903257
-
Dynamics of catalysis revealed from the crystal structures of mutants of diaminopimelate epimerase
-
Pillai B., Cherney M., Diaper C.M., Sutherland A., Blanchard J.S., Vederas J.C., and James M.N.G. Dynamics of catalysis revealed from the crystal structures of mutants of diaminopimelate epimerase. Biochem. Biophys. Res. Commun. 363 (2007) 547-553
-
(2007)
Biochem. Biophys. Res. Commun.
, vol.363
, pp. 547-553
-
-
Pillai, B.1
Cherney, M.2
Diaper, C.M.3
Sutherland, A.4
Blanchard, J.S.5
Vederas, J.C.6
James, M.N.G.7
-
31
-
-
0027968068
-
CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
32
-
-
0032961270
-
ESPript: analysis of multiple sequence alignments in PostScript
-
Gouet P., Courcelle E., Stuart D.I., and Metoz F. ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics 15 (1999) 305-308
-
(1999)
Bioinformatics
, vol.15
, pp. 305-308
-
-
Gouet, P.1
Courcelle, E.2
Stuart, D.I.3
Metoz, F.4
-
33
-
-
0028871926
-
Dali: a network tool for protein structure comparison
-
Holm L., and Sander C. Dali: a network tool for protein structure comparison. Trends Biochem. Sci. 20 (1995) 478-480
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 478-480
-
-
Holm, L.1
Sander, C.2
-
35
-
-
4644340182
-
On the importance of being zwitterionic: enzymatic catalysis of decarboxylation and deprotonation of cationic carbon
-
Richard J.P., and Amyes T.L. On the importance of being zwitterionic: enzymatic catalysis of decarboxylation and deprotonation of cationic carbon. Bioorg. Chem. 32 (2004) 354-366
-
(2004)
Bioorg. Chem.
, vol.32
, pp. 354-366
-
-
Richard, J.P.1
Amyes, T.L.2
-
36
-
-
0021135333
-
Purification and properties of diaminopimelic acid epimerase from Escherichia coli
-
Wiseman J.S., and Nichols J.S. Purification and properties of diaminopimelic acid epimerase from Escherichia coli. J. Biol. Chem. 259 (1984) 8907-8914
-
(1984)
J. Biol. Chem.
, vol.259
, pp. 8907-8914
-
-
Wiseman, J.S.1
Nichols, J.S.2
-
37
-
-
0028074829
-
Synthesis and testing of heterocyclic analogues of diaminopimelic acid (DAP) as inhibitors of DAP dehydrogenase and DAP epimerase
-
Abbott S.D., Lane-Bell P., Sidhu K.P.S., and Vederas J.C. Synthesis and testing of heterocyclic analogues of diaminopimelic acid (DAP) as inhibitors of DAP dehydrogenase and DAP epimerase. J. Am. Chem. Soc. 116 (1994) 6513-6520
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 6513-6520
-
-
Abbott, S.D.1
Lane-Bell, P.2
Sidhu, K.P.S.3
Vederas, J.C.4
-
38
-
-
0031059866
-
Processing of diffraction data collected in oscillation mode
-
Otwinowski Z., and Minor W. Processing of diffraction data collected in oscillation mode. Methods Enzymol. 276 (1997) 307-326
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
40
-
-
3543012707
-
Crystallography & NMR system: a new software suite for macromolecular structure determination
-
Brunger A.T., Adams P.D., Clore G.M., Delano W.L., Gros P., Grosse-Kunstleve R.W., et al. Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr., Sect. D: Biol. Crystallogr. 54 (1998) 905-921
-
(1998)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
-
41
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones T.A., Zou J.Y., Cowan S.W., and Kjeldgaard. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr., Sect. A: Found. Crystallogr. 47 (1991) 110-119
-
(1991)
Acta Crystallogr., Sect. A: Found. Crystallogr.
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard4
|