-
1
-
-
38949094492
-
Cytochrome P450 and chemical toxicity
-
F.P. Guengerich Cytochrome P450 and chemical toxicity Chem. Res. Toxicol. 21 2008 70 83
-
(2008)
Chem. Res. Toxicol.
, vol.21
, pp. 70-83
-
-
Guengerich, F.P.1
-
2
-
-
84859178050
-
Computational prediction of metabolism: Sites, products, SAR, P450 enzyme dynamics, and mechanisms
-
J. Kirchmair Computational prediction of metabolism: sites, products, SAR, P450 enzyme dynamics, and mechanisms J. Chem. Inf. Model. 52 2012 617 648
-
(2012)
J. Chem. Inf. Model.
, vol.52
, pp. 617-648
-
-
Kirchmair, J.1
-
3
-
-
34047158165
-
Visible spectra of type II cytochrome P450-drug complexes: Evidence that incomplete heme coordination is common
-
C.W. Locuson Visible spectra of type II cytochrome P450-drug complexes: evidence that incomplete heme coordination is common Drug Metab. Dispos. 35 2007 614 622
-
(2007)
Drug Metab. Dispos.
, vol.35
, pp. 614-622
-
-
Locuson, C.W.1
-
4
-
-
80052380142
-
Structure-based site of metabolism prediction for cytochrome P450 2D6
-
S.L.C. Moors Structure-based site of metabolism prediction for cytochrome P450 2D6 J. Med. Chem. 54 2011 6098 6105
-
(2011)
J. Med. Chem.
, vol.54
, pp. 6098-6105
-
-
Moors, S.L.C.1
-
5
-
-
80755150217
-
IDSite: An accurate approach to predict P450-mediated drug metabolism
-
J. Li IDSite: an accurate approach to predict P450-mediated drug metabolism J. Chem. Theor. Comput. 7 2011 3829 3845
-
(2011)
J. Chem. Theor. Comput.
, vol.7
, pp. 3829-3845
-
-
Li, J.1
-
6
-
-
61949197836
-
Virtual screening and prediction of site of metabolism for cytochrome P450 1A2 ligands
-
P. Vasanthanathan Virtual screening and prediction of site of metabolism for cytochrome P450 1A2 ligands J. Chem. Inf. Model. 49 2009 43 52
-
(2009)
J. Chem. Inf. Model.
, vol.49
, pp. 43-52
-
-
Vasanthanathan, P.1
-
7
-
-
79960704005
-
RS-predictor: A new tool for predicting sites of cytochrome P450-mediated metabolism applied to CYP 3A4
-
J. Zaretzki RS-predictor: a new tool for predicting sites of cytochrome P450-mediated metabolism applied to CYP 3A4 J. Chem. Inf. Model. 51 2011 1667 1689
-
(2011)
J. Chem. Inf. Model.
, vol.51
, pp. 1667-1689
-
-
Zaretzki, J.1
-
8
-
-
84855867453
-
Ligand-based site of metabolism prediction for cytochrome P450 2D6
-
P. Rydberg, and L. Olsen Ligand-based site of metabolism prediction for cytochrome P450 2D6 ACS Med. Chem. Lett. 3 2012 69 73
-
(2012)
ACS Med. Chem. Lett.
, vol.3
, pp. 69-73
-
-
Rydberg, P.1
Olsen, L.2
-
9
-
-
27444434892
-
MetaSite: Understanding metabolism in human cytochromes from the perspective of the chemist
-
G. Cruciani MetaSite: understanding metabolism in human cytochromes from the perspective of the chemist J. Med. Chem. 48 2005 6970 6979
-
(2005)
J. Med. Chem.
, vol.48
, pp. 6970-6979
-
-
Cruciani, G.1
-
10
-
-
33745209145
-
In silico methods for predicting ligand binding determinants of cytochromes P450
-
M.J. de Groot In silico methods for predicting ligand binding determinants of cytochromes P450 Front. Med. Chem. 3 2006 615 652
-
(2006)
Front. Med. Chem.
, vol.3
, pp. 615-652
-
-
De Groot, M.J.1
-
11
-
-
79955743124
-
In silico prediction of cytochrome P450-mediated drug metabolism
-
T. Zhang In silico prediction of cytochrome P450-mediated drug metabolism Comb. Chem. High Throughput Screen. 14 2011 388 395
-
(2011)
Comb. Chem. High Throughput Screen.
, vol.14
, pp. 388-395
-
-
Zhang, T.1
-
12
-
-
84898399125
-
Exposure and reactivity optimization to predict sites of metabolism in chemicals
-
Cruciani G. (2012) Exposure and reactivity optimization to predict sites of metabolism in chemicals. Drug Discov. Today: Technol
-
(2012)
Drug Discov. Today: Technol
-
-
Cruciani, G.1
-
13
-
-
41149101153
-
Characterization of type II ligands in CYP2C9 and CYP3A4
-
M.M. Ahlström, and I. Zamora Characterization of type II ligands in CYP2C9 and CYP3A4 J. Med. Chem. 51 2008 1755 1763
-
(2008)
J. Med. Chem.
, vol.51
, pp. 1755-1763
-
-
Ahlström, M.M.1
Zamora, I.2
-
14
-
-
4744373354
-
Hydrogen bonding interactions of covalently bonded fluorine atoms: From crystallographic data to a new angular function in the GRID force field
-
E. Carosati Hydrogen bonding interactions of covalently bonded fluorine atoms: from crystallographic data to a new angular function in the GRID force field J. Med. Chem. 47 2004 5114 5125
-
(2004)
J. Med. Chem.
, vol.47
, pp. 5114-5125
-
-
Carosati, E.1
-
15
-
-
80955177088
-
The effects of nitrogen-heme-iron coordination on substrate affinities for cytochrome P450 2E1
-
J.P. Jones The effects of nitrogen-heme-iron coordination on substrate affinities for cytochrome P450 2E1 Chem.-Biol. Interact. 193 2011 50 56
-
(2011)
Chem.-Biol. Interact.
, vol.193
, pp. 50-56
-
-
Jones, J.P.1
-
16
-
-
58149099402
-
Cytochrome P450 2C9 type II binding studies on quinoline-4-carboxamide analogues
-
C.C. Peng Cytochrome P450 2C9 type II binding studies on quinoline-4-carboxamide analogues J. Med. Chem. 51 2008 8000 8011
-
(2008)
J. Med. Chem.
, vol.51
, pp. 8000-8011
-
-
Peng, C.C.1
-
17
-
-
77952547981
-
The effects of type II binding on metabolic stability and binding affinity in cytochrome P450 CYP3A4
-
C.C. Peng The effects of type II binding on metabolic stability and binding affinity in cytochrome P450 CYP3A4 Arch. Biochem. Biophys. 497 2010 68 81
-
(2010)
Arch. Biochem. Biophys.
, vol.497
, pp. 68-81
-
-
Peng, C.C.1
-
18
-
-
79958841704
-
The kinetic mechanism for cytochrome P450 metabolism of type II binding compounds: Evidence supporting direct reduction
-
J. Pearson The kinetic mechanism for cytochrome P450 metabolism of type II binding compounds: evidence supporting direct reduction Arch. Biochem. Biophys. 511 2011 69 79
-
(2011)
Arch. Biochem. Biophys.
, vol.511
, pp. 69-79
-
-
Pearson, J.1
-
19
-
-
84863408056
-
Comparative study of the affinity and metabolism of Type i and Type II binding quinoline carboxamide analogues by cytochromes P450 3A4
-
U.P. Dahal Comparative study of the affinity and metabolism of Type I and Type II binding quinoline carboxamide analogues by cytochromes P450 3A4 J. Med. Chem. 55 2012 280 290
-
(2012)
J. Med. Chem.
, vol.55
, pp. 280-290
-
-
Dahal, U.P.1
-
20
-
-
4644308675
-
Therapeutic drugs that behave as mechanism-based inhibitors of cytochrome P450 3A4
-
S. Zhou Therapeutic drugs that behave as mechanism-based inhibitors of cytochrome P450 3A4 Curr. Drug Metab. 5 2004 415 442
-
(2004)
Curr. Drug Metab.
, vol.5
, pp. 415-442
-
-
Zhou, S.1
-
21
-
-
24944510505
-
Cytochrome P450 enzymes mechanism based inhibitors: Common sub-structures and reactivity
-
E. Fontana Cytochrome P450 enzymes mechanism based inhibitors: common sub-structures and reactivity Curr. Drug Metab. 6 2005 413 454
-
(2005)
Curr. Drug Metab.
, vol.6
, pp. 413-454
-
-
Fontana, E.1
-
23
-
-
80053004364
-
Structural alert/reactive metabolite concept as applied in medicinal chemistry to mitigate the risk of idiosyncratic drug toxicity: A perspective based on the critical examination of trends in the top 200 drugs marketed in the United States
-
A.F. Stepan Structural alert/reactive metabolite concept as applied in medicinal chemistry to mitigate the risk of idiosyncratic drug toxicity: a perspective based on the critical examination of trends in the top 200 drugs marketed in the United States Chem. Res. Toxicol. 24 2011 1345 1410
-
(2011)
Chem. Res. Toxicol.
, vol.24
, pp. 1345-1410
-
-
Stepan, A.F.1
-
24
-
-
84865485155
-
ToxAlerts: A web server of structural alerts for toxic chemicals and compounds with potential adverse reactions
-
I. Sushko ToxAlerts: a web server of structural alerts for toxic chemicals and compounds with potential adverse reactions J. Chem. Inf. Model. 52 2012 2310 2316
-
(2012)
J. Chem. Inf. Model.
, vol.52
, pp. 2310-2316
-
-
Sushko, I.1
-
25
-
-
79958054556
-
Handling reactive metabolite positives in drug discovery: What has retrospective structure-toxicity analyses taught us?
-
A.S. Kalgutkar Handling reactive metabolite positives in drug discovery: what has retrospective structure-toxicity analyses taught us? Chem. Biol. Interact. 192 2011 46 55
-
(2011)
Chem. Biol. Interact.
, vol.192
, pp. 46-55
-
-
Kalgutkar, A.S.1
-
26
-
-
84862278754
-
Mechanism-based inactivation (MBI) of cytochrome P450 enzymes: Structure-activity relationships and discovery strategies to mitigate drug-drug interaction risks
-
S.T.M. Orr Mechanism-based inactivation (MBI) of cytochrome P450 enzymes: structure-activity relationships and discovery strategies to mitigate drug-drug interaction risks J. Med. Chem. 55 2012 4896 4933
-
(2012)
J. Med. Chem.
, vol.55
, pp. 4896-4933
-
-
Orr, S.T.M.1
-
27
-
-
0028688471
-
Hepatitis induced by alpidem (Ananxyl). Four cases, one of them fatal
-
V. Baty Hepatitis induced by alpidem (Ananxyl). Four cases, one of them fatal Gastroenterol. Clin. Biol. 18 1994 1129 1131
-
(1994)
Gastroenterol. Clin. Biol.
, vol.18
, pp. 1129-1131
-
-
Baty, V.1
-
28
-
-
84875700285
-
-
Chembl database
-
Chembl database; URL: http://www.ebi.ac.uk/chembl
-
-
-
-
29
-
-
84875710104
-
-
Pubchem database
-
Pubchem database; URL: http://pubchem.ncbi.nlm.nih.gov
-
-
-
-
30
-
-
84875734169
-
-
Molecular discovery P450-Consortium page
-
Molecular discovery P450-Consortium page; URL: http://www.moldiscovery. com/consortia/CYP
-
-
-
-
31
-
-
0012286670
-
Pharmacokinetically based mapping device for chemical space navigation
-
T.I. Oprea Pharmacokinetically based mapping device for chemical space navigation J. Comb. Chem. 4 2002 258 266
-
(2002)
J. Comb. Chem.
, vol.4
, pp. 258-266
-
-
Oprea, T.I.1
-
32
-
-
80255141850
-
Evolution of the physicochemical properties of marketed drugs: Can history foretell the future?
-
B. Faller Evolution of the physicochemical properties of marketed drugs: can history foretell the future? Drug Discov. Today 16 2011 976 984
-
(2011)
Drug Discov. Today
, vol.16
, pp. 976-984
-
-
Faller, B.1
-
33
-
-
0034213636
-
Predicting blood-brain barrier permeation from three-dimensional molecular structure
-
P. Crivori Predicting blood-brain barrier permeation from three-dimensional molecular structure J. Med. Chem. 43 2000 2204 2216
-
(2000)
J. Med. Chem.
, vol.43
, pp. 2204-2216
-
-
Crivori, P.1
-
34
-
-
37249023309
-
a prediction method using grid molecular interaction fields
-
a prediction method using grid molecular interaction fields J. Chem. Inf. Model. 47 2007 2172 2181
-
(2007)
J. Chem. Inf. Model.
, vol.47
, pp. 2172-2181
-
-
Milletti, F.1
-
35
-
-
0033010360
-
Eight inhibitory monoclonal antibodies define the role of individual P-450s in human liver microsomal diazepam, 7-ethoxycoumarin, and imipramine metabolism
-
T.J. Yang Eight inhibitory monoclonal antibodies define the role of individual P-450s in human liver microsomal diazepam, 7-ethoxycoumarin, and imipramine metabolism Drug Metab. Dispos. 27 1999 102 109
-
(1999)
Drug Metab. Dispos.
, vol.27
, pp. 102-109
-
-
Yang, T.J.1
-
36
-
-
0030425332
-
The biotransformation of clomipramine in vitro, identification of the cytochrome P450s responsible for the separate metabolic pathways
-
K.K. Nielsen The biotransformation of clomipramine in vitro, identification of the cytochrome P450s responsible for the separate metabolic pathways J. Pharmacol. Exp. Ther. 277 1996 1659 1664
-
(1996)
J. Pharmacol. Exp. Ther.
, vol.277
, pp. 1659-1664
-
-
Nielsen, K.K.1
-
37
-
-
18544367973
-
Inhibitory effects of tricyclic antidepressants (TCAs) on human cytochrome P450 enzymes in vitro: Mechanism of drug interaction between TCAs and phenytoin
-
J.G. Shin Inhibitory effects of tricyclic antidepressants (TCAs) on human cytochrome P450 enzymes in vitro: mechanism of drug interaction between TCAs and phenytoin Drug Metab. Dispos. 30 2002 1102 1107
-
(2002)
Drug Metab. Dispos.
, vol.30
, pp. 1102-1107
-
-
Shin, J.G.1
-
38
-
-
33947603205
-
Comparison of cytochrome P450 inhibition assays for drug discovery using human liver microsomes with LC-MS, rhCYP450 isozymes with fluorescence, and double cocktail with LC-MS
-
L. Di Comparison of cytochrome P450 inhibition assays for drug discovery using human liver microsomes with LC-MS, rhCYP450 isozymes with fluorescence, and double cocktail with LC-MS Int. J. Pharm. 335 2007 1 11
-
(2007)
Int. J. Pharm.
, vol.335
, pp. 1-11
-
-
Di, L.1
-
39
-
-
0141789965
-
QSAR analysis of the inhibition of recombinant CYP 3A4 activity by structurally diverse compounds using a genetic algorithm-combined partial least squares method
-
S. Wanchana QSAR analysis of the inhibition of recombinant CYP 3A4 activity by structurally diverse compounds using a genetic algorithm-combined partial least squares method Pharm. Res. 20 2003 1401 1408
-
(2003)
Pharm. Res.
, vol.20
, pp. 1401-1408
-
-
Wanchana, S.1
-
40
-
-
11144300165
-
Increased risk of gastrointestinal adverse effects under SSRI/NSAID combination may be due to pharmacokinetic interactions
-
D.F. Zullino, and Y. Khazaal Increased risk of gastrointestinal adverse effects under SSRI/NSAID combination may be due to pharmacokinetic interactions Br. J. Clin. Pharmacol. 59 2005 118 119
-
(2005)
Br. J. Clin. Pharmacol.
, vol.59
, pp. 118-119
-
-
Zullino, D.F.1
Khazaal, Y.2
-
41
-
-
33845773873
-
Inhibition of cytochrome P450 3A4 by a pyrimidineimidazole: Evidence for complex heme interactions
-
J.M. Hutzler Inhibition of cytochrome P450 3A4 by a pyrimidineimidazole: evidence for complex heme interactions Chem. Res. Toxicol. 19 2006 1650 1659
-
(2006)
Chem. Res. Toxicol.
, vol.19
, pp. 1650-1659
-
-
Hutzler, J.M.1
-
42
-
-
23844460948
-
Prediction of cytochrome P450 3A4, 2D6, and 2C9 inhibitors and substrates by using support vector machines
-
C.W. Yap, and Y.Z. Chen Prediction of cytochrome P450 3A4, 2D6, and 2C9 inhibitors and substrates by using support vector machines J. Chem. Inf. Model. 45 2005 982 992
-
(2005)
J. Chem. Inf. Model.
, vol.45
, pp. 982-992
-
-
Yap, C.W.1
Chen, Y.Z.2
|