-
2
-
-
33751520430
-
Natural selection on human miRNA binding sites inferred from SNP data
-
Chen K, Rajewsky N. Natural selection on human miRNA binding sites inferred from SNP data. Nat Genet. 2006;38:1452-1456.
-
(2006)
Nat Genet
, vol.38
, pp. 1452-1456
-
-
Chen, K.1
Rajewsky, N.2
-
3
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis BP, Burge CB, Bartel DP. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell. 2005;120:15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
4
-
-
0347755643
-
The microRNA Registry
-
Database issue
-
Griffiths-Jones S. The microRNA Registry. Nucleic Acids Res. 2004;32(Database issue):D109-D11.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Griffiths-Jones, S.1
-
5
-
-
77955902024
-
The widespread regulation of microRNA biogenesis, function and decay
-
Krol J, Loedige I, Filipowicz W. The widespread regulation of microRNA biogenesis, function and decay. Nat Rev Genet. 2010; 11(9):597-610.
-
(2010)
Nat Rev Genet
, vol.11
, Issue.9
, pp. 597-610
-
-
Krol, J.1
Loedige, I.2
Filipowicz, W.3
-
6
-
-
8144225486
-
MicroRNA genes are transcribed by RNA polymerase II
-
Lee Y, Kim M, Han J, et al. MicroRNA genes are transcribed by RNA polymerase II. EMBO J. 2004;23:4051-4060.
-
(2004)
EMBO J
, vol.23
, pp. 4051-4060
-
-
Lee, Y.1
Kim, M.2
Han, J.3
-
7
-
-
0141843656
-
The nuclear RNase III Drosha initiates microRNA processing
-
Lee Y, Ahn C, Han J, et al. The nuclear RNase III Drosha initiates microRNA processing. Nature. 2003;425(6956):415-419.
-
(2003)
Nature
, vol.425
, Issue.6956
, pp. 415-419
-
-
Lee, Y.1
Ahn, C.2
Han, J.3
-
8
-
-
27744537851
-
Human RISC couples microRNA biogenesis and posttranscriptional gene silencing
-
Gregory RI, Chendrimada TP, Cooch N, Shiekhattar R. Human RISC couples microRNA biogenesis and posttranscriptional gene silencing. Cell. 2005;123(4):631-640.
-
(2005)
Cell
, vol.123
, Issue.4
, pp. 631-640
-
-
Gregory, R.I.1
Chendrimada, T.P.2
Cooch, N.3
Shiekhattar, R.4
-
9
-
-
0347988235
-
Nuclear export of microRNA precursors
-
Lund E, Guttinger S, Calado A, Dahlberg JE, Kutay U. Nuclear export of microRNA precursors. Science. 2004;303:95-98.
-
(2004)
Science
, vol.303
, pp. 95-98
-
-
Lund, E.1
Guttinger, S.2
Calado, A.3
Dahlberg, J.E.4
Kutay, U.5
-
10
-
-
3142613181
-
Single processing center models for human Dicer and bacterial RNase III
-
Zhang H, Kolb FA, Jaskiewicz L, Westhof E, Filipowicz W. Single processing center models for human Dicer and bacterial RNase III. Cell. 2004;118(1):57-68.
-
(2004)
Cell
, vol.118
, Issue.1
, pp. 57-68
-
-
Zhang, H.1
Kolb, F.A.2
Jaskiewicz, L.3
Westhof, E.4
Filipowicz, W.5
-
11
-
-
23644433363
-
TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing
-
Chendrimada TP, Gregory RI, Kumaraswamy E, et al. TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing. Nature. 2005;436(7051):740-744.
-
(2005)
Nature
, vol.436
, Issue.7051
, pp. 740-744
-
-
Chendrimada, T.P.1
Gregory, R.I.2
Kumaraswamy, E.3
-
12
-
-
4644223259
-
Mechanisms of gene silencing by doublestranded RNA
-
Meister G, Tuschl T. Mechanisms of gene silencing by doublestranded RNA. Nature. 2004;431:343-349.
-
(2004)
Nature
, vol.431
, pp. 343-349
-
-
Meister, G.1
Tuschl, T.2
-
13
-
-
75649129754
-
Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway
-
Ghildiyal M, Xu J, Seitz H, Weng Z, Zamore PD. Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway. RNA. 2010;16(1):43-56.
-
(2010)
RNA
, vol.16
, Issue.1
, pp. 43-56
-
-
Ghildiyal, M.1
Xu, J.2
Seitz, H.3
Weng, Z.4
Zamore, P.D.5
-
14
-
-
0142165224
-
Functional siRNA and miRNAs exhibit strand bias
-
Khvorova A, Reynolds A, Jayasena SD. Functional siRNA and miRNAs exhibit strand bias. Cell. 2003;115:209-216.
-
(2003)
Cell
, vol.115
, pp. 209-216
-
-
Khvorova, A.1
Reynolds, A.2
Jayasena, S.D.3
-
15
-
-
34447097693
-
Intronic microRNA precursors that bypass Drosha processing
-
Ruby JG, Jan CH, Bartel DP. Intronic microRNA precursors that bypass Drosha processing. Nature. 2007;448(7149):83-86.
-
(2007)
Nature
, vol.448
, Issue.7149
, pp. 83-86
-
-
Ruby, J.G.1
Jan, C.H.2
Bartel, D.P.3
-
16
-
-
45849107663
-
The effect of central loops in miRNA: MRE duplexes on the efficiency of miRNA-mediated gene regulation
-
Ye W, Lv Q, Wong CK, et al. The effect of central loops in miRNA: MRE duplexes on the efficiency of miRNA-mediated gene regulation. PLoS One. 2008;3:e1719.
-
(2008)
PLoS One
, vol.3
-
-
Ye, W.1
Lv, Q.2
Wong, C.K.3
-
17
-
-
33750318273
-
A guide through present computational approaches for the identification of mammalian microRNA targets
-
Sethupathy P, Megraw M, Hatzigeorgiou AG. A guide through present computational approaches for the identification of mammalian microRNA targets. Nat Methods. 2006;3(11):881-886.
-
(2006)
Nat Methods
, vol.3
, Issue.11
, pp. 881-886
-
-
Sethupathy, P.1
Megraw, M.2
Hatzigeorgiou, A.G.3
-
18
-
-
0034737298
-
RNAi: Doublestaranded RNAdirects the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals
-
staranded RNAdirects the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals
-
Zamore PD, Tuschl T, Sharp PA, Bartel DP. RNAi: doublestaranded RNAdirects the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals. Cell. 2000;101:25-33.
-
(2000)
Cell
, vol.101
, pp. 25-33
-
-
Zamore, P.D.1
Tuschl, T.2
Sharp, P.A.3
Bartel, D.P.4
-
19
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell. 2004;116:281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
20
-
-
24644480213
-
Inhibition of translational initiation by Let-7 MicroRNA in human cells
-
Pillai RS, Bhattacharyya SN, Artus CG, et al. Inhibition of translational initiation by Let-7 MicroRNA in human cells. Science. 2005;309:1573-1576.
-
(2005)
Science
, vol.309
, pp. 1573-1576
-
-
Pillai, R.S.1
Bhattacharyya, S.N.2
Artus, C.G.3
-
21
-
-
34250017082
-
An mRNA m7G cap binding-like motif within human Ago2 represses translation
-
Kiriakidou M, Tan GS, Lamprinaki S, De Planell-Saguer M, Nelson PT, Mourelatos Z. An mRNA m7G cap binding-like motif within human Ago2 represses translation. Cell. 2007;129:1141- 1151.
-
(2007)
Cell
, vol.129
, pp. 1141
-
-
Kiriakidou, M.1
Tan, G.S.2
Lamprinaki, S.3
De Planell-Saguer, M.4
Nelson, P.T.5
Mourelatos, Z.6
-
22
-
-
77951920095
-
Dynamical modeling of microRNA action on the protein translation process
-
Zinovyev A, Morozova N, Nonne N, Barillot E, Harel-Bellan A, Gorban AN. Dynamical modeling of microRNA action on the protein translation process. BMC Syst Biol. 2010;4:13.
-
(2010)
BMC Syst Biol
, vol.4
, pp. 13
-
-
Zinovyev, A.1
Morozova, N.2
Nonne, N.3
Barillot, E.4
Harel-Bellan, A.5
Gorban, A.N.6
-
23
-
-
67651000077
-
The GW182 protein family in animal cells: New insights into domains required for miRNAmediated gene silencing
-
Eulalio A, Tritschler F, Izaurralde E. The GW182 protein family in animal cells: new insights into domains required for miRNAmediated gene silencing. RNA. 2009;15(8):1433-1442.
-
(2009)
RNA
, vol.15
, Issue.8
, pp. 1433-1442
-
-
Eulalio, A.1
Tritschler, F.2
Izaurralde, E.3
-
24
-
-
77953629046
-
Regulation of mRNA translation and stability by microRNAs
-
Fabian MR, Sonenberg N, Filipowicz W. Regulation of mRNA translation and stability by microRNAs. Annu Rev Biochem. 2010;79:351-379.
-
(2010)
Annu Rev Biochem
, vol.79
, pp. 351-379
-
-
Fabian, M.R.1
Sonenberg, N.2
Filipowicz, W.3
-
25
-
-
40349094597
-
MicroRNA- 373 induces expression of genes with complementary promoter sequences
-
Place RF, Li LC, Pookot D, Noonan EJ, Dahiya R. MicroRNA- 373 induces expression of genes with complementary promoter sequences. Proc Natl Acad Sc. U S A. 2008;105:1608-1613.
-
(2008)
Proc Natl Acad Sc. U S A.
, vol.105
, pp. 1608-1613
-
-
Place, R.F.1
Li, L.C.2
Pookot, D.3
Noonan, E.J.4
Dahiya, R.5
-
26
-
-
43449090367
-
MicroRNA-10a binds the 5'-- UTR of ribosomal protein mRNAs and enhances their translation
-
Orom UA, Nielsen FC, Lund AH. MicroRNA-10a binds the 5'-- UTR of ribosomal protein mRNAs and enhances their translation. Mol Cell. 2008;30:460-471.
-
(2008)
Mol Cell
, vol.30
, pp. 460-471
-
-
Orom, U.A.1
Nielsen, F.C.2
Lund, A.H.3
-
27
-
-
78651302621
-
MicroRNA-181a modulates gene expression of zinc finger family members by directly targeting their coding regions
-
Huang S, Wu S, Ding J, et al. MicroRNA-181a modulates gene expression of zinc finger family members by directly targeting their coding regions. Nucleic Acids Res. 2010;38:7211-7218.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 7211-7218
-
-
Huang, S.1
Wu, S.2
Ding, J.3
-
28
-
-
68649089561
-
Estrogen regulation of MicroRNA expression
-
Klinge CM. Estrogen regulation of MicroRNA expression. Curr Genomics. 2009;10(3):169-183.
-
(2009)
Curr Genomics
, vol.10
, Issue.3
, pp. 169-183
-
-
Klinge, C.M.1
-
29
-
-
70349463161
-
The estrogen receptor-α-induced microRNA signature regulates itself and its transcriptional response
-
Castellano L, Giamas G, Jacob J, et al. The estrogen receptor-α-induced microRNA signature regulates itself and its transcriptional response. Proc Natl Acad Sci U S A. 2009;106(37):15732-15737.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, Issue.37
, pp. 15732-15737
-
-
Castellano, L.1
Giamas, G.2
Jacob, J.3
-
30
-
-
60549117656
-
Microtranscriptome regulation by gonadotropin-releasing hormone
-
Yuen T, Ruf F, Chu T, Sealfon SC. Microtranscriptome regulation by gonadotropin-releasing hormone. Mol Cell Endocrinol. 2009; 302(1):12-17.
-
(2009)
Mol Cell Endocrinol
, vol.302
, Issue.1
, pp. 12-17
-
-
Yuen, T.1
Ruf, F.2
Chu, T.3
Sealfon, S.C.4
-
31
-
-
77955922623
-
Testosterone-induced upregulation of miRNAs in the female mouse liver
-
Delić D, Grosser C, Dkhil M, Al-Quraishy S, Wunderlich F. Testosterone-induced upregulation of miRNAs in the female mouse liver. Steroids. 2010;75(12):998-1004.
-
(2010)
Steroids
, vol.75
, Issue.12
, pp. 998-1004
-
-
Delić, D.1
Grosser, C.2
Dkhil, M.3
Al-Quraishy, S.4
Wunderlich, F.5
-
32
-
-
78449239272
-
Glucocorticoids modulate microRNA expression and processing during lymphocyte apoptosis
-
Smith LK, Shah RR, Cidlowski JA. Glucocorticoids modulate microRNA expression and processing during lymphocyte apoptosis. J Biol Chem. 2010;285(47):36698-36708.
-
(2010)
J Biol Chem
, vol.285
, Issue.47
, pp. 36698-36708
-
-
Smith, L.K.1
Shah, R.R.2
Cidlowski, J.A.3
-
33
-
-
0141534299
-
A novel RNA splicing mediated gene silencing mechanism potential for genome evolution
-
Lin SL, Chang D, Wu DY, Ying SY. A novel RNA splicing mediated gene silencing mechanism potential for genome evolution. Biochem Biophys Res Commun. 2003;310:754-760.
-
(2003)
Biochem Biophys Res Commun
, vol.310
, pp. 754-760
-
-
Lin, S.L.1
Chang, D.2
Wu, D.Y.3
Ying, S.Y.4
-
34
-
-
15944402920
-
Small regulatory RNAs in mammals
-
Spec No 1
-
Mattick JS, Makunin IV. Small regulatory RNAs in mammals. Hum Mol Genet. 2005;14(Spec No 1):R121-R132.
-
(2005)
Hum Mol Genet
, vol.14
-
-
Mattick, J.S.1
Makunin, I.V.2
-
35
-
-
0035955366
-
An extensive class of small RNAs in Caenorhabditis elegans
-
Lee RC, Ambros V. An extensive class of small RNAs in Caenorhabditis elegans. Science. 2001;294:862-864.
-
(2001)
Science
, vol.294
, pp. 862-864
-
-
Lee, R.C.1
Ambros, V.2
-
36
-
-
31744432337
-
The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation
-
Chen JF, Mandel EM, Thomson JM, et al. The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation. Nat Genet. 2006;38:228-233.
-
(2006)
Nat Genet
, vol.38
, pp. 228-233
-
-
Chen, J.F.1
Mandel, E.M.2
Thomson, J.M.3
-
37
-
-
25444520537
-
miR-15 and miR-16 induce apoptosis by targeting BCL2
-
Cimmino A, Calin GA, Fabbri M, et al. miR-15 and miR-16 induce apoptosis by targeting BCL2. Proc Natl Acad Sci U S A. 2005;102:13944-13949.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 13944-13949
-
-
Cimmino, A.1
Calin, G.A.2
Fabbri, M.3
-
38
-
-
60149084560
-
MicroRNAs and cancer: Short RNAs go a long way
-
Ventura A, Jacks T. MicroRNAs and cancer: short RNAs go a long way. Cell. 2009;136(4):586-591.
-
(2009)
Cell
, vol.136
, Issue.4
, pp. 586-591
-
-
Ventura, A.1
Jacks, T.2
-
39
-
-
66449105070
-
MicroRNA 18 and 124a down-regulate the glucocorticoid receptor: Implications for glucocorticoid responsiveness in the brain
-
Vreugdenhil E, Verissimo CS, Mariman R, et al. MicroRNA 18 and 124a down-regulate the glucocorticoid receptor: implications for glucocorticoid responsiveness in the brain. Endocrinology. 2009;150(5):2220-2228.
-
(2009)
Endocrinology
, vol.150
, Issue.5
, pp. 2220-2228
-
-
Vreugdenhil, E.1
Verissimo, C.S.2
Mariman, R.3
-
40
-
-
78049353463
-
MicroRNAs regulate pituitary development, and microRNA 26b specifically targets lymphoid enhancer factor 1 (Lef-1), which modulates pituitary transcription factor 1 (Pit-1) expression
-
Zhang Z, Florez S, Gutierrez-Hartmann A, Martin JF, Amendt BA. MicroRNAs regulate pituitary development, and microRNA 26b specifically targets lymphoid enhancer factor 1 (Lef-1), which modulates pituitary transcription factor 1 (Pit-1) expression. J Biol Chem. 2010;285(45):34718-34728.
-
(2010)
J Biol Chem
, vol.285
, Issue.45
, pp. 34718-34728
-
-
Zhang, Z.1
Florez, S.2
Gutierrez-Hartmann, A.3
Martin, J.F.4
Amendt, B.A.5
-
41
-
-
36248978699
-
MicroRNA expression is required for pancreatic islet cell genesis in the mouse
-
Lynn FC, Skewes-Cox P, Kosaka Y, McManus MT, Harfe BD, German MS. MicroRNA expression is required for pancreatic islet cell genesis in the mouse. Diabetes. 2007;56(12):2938-2945.
-
(2007)
Diabetes
, vol.56
, Issue.12
, pp. 2938-2945
-
-
Lynn, F.C.1
Skewes-Cox, P.2
Kosaka, Y.3
McManus, M.T.4
Harfe, B.D.5
German, M.S.6
-
42
-
-
61349122608
-
MicroRNA miR-7 is preferentially expressed in endocrine cells of the developing and adult human pancreas
-
Correa-Medina M, Bravo-Egana V, Rosero S, et al. MicroRNA miR-7 is preferentially expressed in endocrine cells of the developing and adult human pancreas. Gene Expr Patterns. 2009;9(4): 193-199.
-
(2009)
Gene Expr Patterns
, vol.9
, Issue.4
, pp. 193-199
-
-
Correa-Medina, M.1
Bravo-Egana, V.2
Rosero, S.3
-
43
-
-
80053368468
-
A TSH-CREB1-microRNA loop is required for thyroid cell growth
-
Leone V, D'Angelo D, Ferraro A, et al. A TSH-CREB1-microRNA loop is required for thyroid cell growth. Mol Endocrinol. 2011; 25(10):1819-1830.
-
(2011)
Mol Endocrinol
, vol.25
, Issue.10
, pp. 1819-1830
-
-
Leone, V.1
D'Angelo, D.2
Ferraro, A.3
-
44
-
-
55849131177
-
Dicer1 is essential for female fertility and normal development of the female reproductive system
-
Hong X, Luense LJ, McGinnis LK, Nothnick WB, Christenson LK. Dicer1 is essential for female fertility and normal development of the female reproductive system. Endocrinology. 2008;149(12): 6207-6212.
-
(2008)
Endocrinology
, vol.149
, Issue.12
, pp. 6207-6212
-
-
Hong, X.1
Luense, L.J.2
McGinnis, L.K.3
Nothnick, W.B.4
Christenson, L.K.5
-
45
-
-
79960988204
-
The roles of small RNA pathways in reproductive medicine
-
Hawkins SM, Buchold GM, Matzuk MM. The roles of small RNA pathways in reproductive medicine. Mol Endocrinol. 2011;25(8): 1257-1279.
-
(2011)
Mol Endocrinol
, vol.25
, Issue.8
, pp. 1257-1279
-
-
Hawkins, S.M.1
Buchold, G.M.2
Matzuk, M.M.3
-
46
-
-
18444417714
-
Validation of oligonucleotide microarray data using microfluidic low-density arrays: A new statistical method to normalize real-time RT-PCR data
-
Abruzzo LV, Lee KY, Fuller A, et al. Validation of oligonucleotide microarray data using microfluidic low-density arrays: a new statistical method to normalize real-time RT-PCR data. Biotechniques. 2005;38:785-792.
-
(2005)
Biotechniques
, vol.38
, pp. 785-792
-
-
Abruzzo, L.V.1
Lee, K.Y.2
Fuller, A.3
-
47
-
-
37349051019
-
Real-time PCR quantification of precursor and mature microRNA
-
Schmittgen TD, Lee EJ, Jiang J, et al. Real-time PCR quantification of precursor and mature microRNA. Methods. 2008;44: 31-38.
-
(2008)
Methods
, vol.44
, pp. 31-38
-
-
Schmittgen, T.D.1
Lee, E.J.2
Jiang, J.3
-
48
-
-
79956291547
-
Differential expression of microRNA-675, microRNA-139-3p and microRNA-335 in benign and malignant adrenocortical tumours
-
Schmitz KJ, Helwig J, Bertram S, et al. Differential expression of microRNA-675, microRNA-139-3p and microRNA-335 in benign and malignant adrenocortical tumours. J Clin Pathol. 2011; 64(6):529-535.
-
(2011)
J Clin Pathol
, vol.64
, Issue.6
, pp. 529-535
-
-
Schmitz, K.J.1
Helwig, J.2
Bertram, S.3
-
49
-
-
72749126286
-
Integrative molecular bioinformatics study of human adrenocortical tumors: MicroRNA, tissue-specific target prediction, and pathway analysis
-
Tömböl Z, Szabó PM, Molnár V, et al. Integrative molecular bioinformatics study of human adrenocortical tumors: microRNA, tissue-specific target prediction, and pathway analysis. Endocr Relat Cancer. 2009;16(3):895-906.
-
(2009)
Endocr Relat Cancer
, vol.16
, Issue.3
, pp. 895-906
-
-
Tömböl, Z.1
Szabó, P.M.2
Molnár, V.3
-
50
-
-
84855944292
-
The role of microRNA deregulation in the pathogenesis of adrenocortical carcinoma
-
Özata DM, Caramuta S, Velázquez-Fernández D, et al. The role of microRNA deregulation in the pathogenesis of adrenocortical carcinoma. Endocr Relat Cancer. 2011;18(6):643-655.
-
(2011)
Endocr Relat Cancer
, vol.18
, Issue.6
, pp. 643-655
-
-
Özata, D.M.1
Caramuta, S.2
Velázquez-Fernández, D.3
-
51
-
-
79953767181
-
MicroRNA profiling of adrenocortical tumors reveals miR-483 as a marker of malignancy
-
Patterson EE, Holloway AK, Weng J, Fojo T, Kebebew E. MicroRNA profiling of adrenocortical tumors reveals miR-483 as a marker of malignancy. Cancer. 2011;117(8):1630-1639.
-
(2011)
Cancer
, vol.117
, Issue.8
, pp. 1630-1639
-
-
Patterson, E.E.1
Holloway, A.K.2
Weng, J.3
Fojo, T.4
Kebebew, E.5
-
52
-
-
77953168294
-
Regulation of insulin-like growth factor-mammalian target of rapamycin signaling by microRNA in childhood adrenocortical tumors
-
Doghman M, El Wakil A, Cardinaud B, et al. Regulation of insulin-like growth factor-mammalian target of rapamycin signaling by microRNA in childhood adrenocortical tumors. Cancer Res. 2010;70(11):4666-4675.
-
(2010)
Cancer Res
, vol.70
, Issue.11
, pp. 4666-4675
-
-
Doghman, M.1
El Wakil, A.2
Cardinaud, B.3
-
53
-
-
73349137922
-
miR-195 and miR-483-5p identified as predictors of poor prognosis in adrenocortical cancer
-
Soon PS, Tacon LJ, Gill AJ, et al. miR-195 and miR-483-5p identified as predictors of poor prognosis in adrenocortical cancer. Clin Cancer Res. 2009;15(24):7684-7692.
-
(2009)
Clin Cancer Res
, vol.15
, Issue.24
, pp. 7684-7692
-
-
Soon, P.S.1
Tacon, L.J.2
Gill, A.J.3
-
54
-
-
69949098536
-
miR-24 inhibits cell proliferation by targeting E2F2, MYC, and other cell-cycle genes via binding to "seedless" 3'-UTR microRNA recognition elements
-
Lal A, Navarro F, Maher CA, et al. miR-24 inhibits cell proliferation by targeting E2F2, MYC, and other cell-cycle genes via binding to "seedless" 3'-UTR microRNA recognition elements. Mol Cell. 2009;35(5):610-625.
-
(2009)
Mol Cell
, vol.35
, Issue.5
, pp. 610-625
-
-
Lal, A.1
Navarro, F.2
Maher, C.A.3
-
56
-
-
31844442152
-
Computational analysis of microRNA targets in Caenorhabditis elegans
-
Wanatabe Y, Yachie N, Numata K, Saito R, Kanai A, Tomita M. Computational analysis of microRNA targets in Caenorhabditis elegans. Gene. 2006;365:2-10.
-
(2006)
Gene
, vol.365
, pp. 2-10
-
-
Wanatabe, Y.1
Yachie, N.2
Numata, K.3
Saito, R.4
Kanai, A.5
Tomita, M.6
-
57
-
-
33645472191
-
Systematic identification of microRNA functions by combining target prediction and expression profiling
-
Wang X, Wang X. Systematic identification of microRNA functions by combining target prediction and expression profiling. Nucleic Acids Res. 2006;34:1646-1652.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 1646-1652
-
-
Wang, X.1
Wang, X.2
-
58
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A, Tamayo P, Mootha VK, et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A. 2005; 102(43):15545-15550.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, Issue.43
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
-
59
-
-
77952953203
-
Meta-analysis of adreno cortical tumour genomics data: Novel pathogenic pathways revealed
-
Szabó PM, Tamási V, Molnár V, et al. Meta-analysis of adreno cortical tumour genomics data: novel pathogenic pathways revealed. Oncogene. 2010;29(21):3163-3172.
-
(2010)
Oncogene
, vol.29
, Issue.21
, pp. 3163-3172
-
-
Szabó, P.M.1
Tamási, V.2
Molnár, V.3
-
60
-
-
84872206076
-
mRNA and microRNA expression patterns in adrenocortical cancer
-
Zsippai A, Szabó DR, Szabó PM, Tömböl Z, Bendes MR, Nagy Z, Rácz K, Igaz P. mRNA and microRNA expression patterns in adrenocortical cancer. Am J Cancer Res. 2011;1(5):618-628.
-
(2011)
Am J Cancer Res
, vol.1
, Issue.5
, pp. 618-628
-
-
Zsippai, A.1
Szabó, D.R.2
Szabó, P.M.3
Tömböl, Z.4
Bendes, M.R.5
Nagy, Z.6
Rácz, K.7
Igaz, P.8
-
61
-
-
44449094626
-
Global correlation analysis of microRNA and mRNA expression profiles on human cell lines
-
Ruike Y, Ichimura A, Tsuchiya S, et al. Global correlation analysis of microRNA and mRNA expression profiles on human cell lines. J Hum Genet. 2008;53:515-523.
-
(2008)
J Hum Genet
, vol.53
, pp. 515-523
-
-
Ruike, Y.1
Ichimura, A.2
Tsuchiya, S.3
-
62
-
-
49949117302
-
Widespread changes in protein synthesis induced by microRNAs
-
Selbach M, Schwanhäusser B, Thierfelder N, Fang Z, Khanin R, Rajewsky N. Widespread changes in protein synthesis induced by microRNAs. Nature. 2008;455:58-63.
-
(2008)
Nature
, vol.455
, pp. 58-63
-
-
Selbach, M.1
Schwanhäusser, B.2
Thierfelder, N.3
Fang, Z.4
Khanin, R.5
Rajewsky, N.6
-
63
-
-
77149122720
-
Analyzing mRNA expression identifies Smad3 as a microRNA-140 target regulated only at protein level
-
Pais H, Nicolas FE, Soond SM, et al. Analyzing mRNA expression identifies Smad3 as a microRNA-140 target regulated only at protein level. RNA. 2010;16(3):489-494.
-
(2010)
RNA
, vol.16
, Issue.3
, pp. 489-494
-
-
Pais, H.1
Nicolas, F.E.2
Soond, S.M.3
-
64
-
-
77957782177
-
Down-regulation of Wee1 kinase by a specific subset of microRNA in human sporadic pituitary adenomas
-
Butz H, Likó I, Czirják S, et al. Down-regulation of Wee1 kinase by a specific subset of microRNA in human sporadic pituitary adenomas. J Clin Endocrinol Metab. 2010;95(10):E181-E191.
-
(2010)
J Clin Endocrinol Metab
, vol.95
, Issue.10
-
-
Butz, H.1
Likó, I.2
Czirják, S.3
-
65
-
-
36048952786
-
Tumor protein 53-induced nuclear protein 1 expression is repressed by miR-155, and its restoration inhibits pancreatic tumor development
-
Gironella M, Seux M, Xie MJ, et al. Tumor protein 53-induced nuclear protein 1 expression is repressed by miR-155, and its restoration inhibits pancreatic tumor development. Proc Natl Acad Sci U S A. 2007;104(41):16170-16175.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, Issue.41
, pp. 16170-16175
-
-
Gironella, M.1
Seux, M.2
Xie, M.J.3
-
66
-
-
49949116902
-
The impact of microRNAs on protein output
-
Baek D, Villén J, Shin C, Camargo FD, Gygi SP, Bartel DP. The impact of microRNAs on protein output. Nature. 2008;455: 64-71.
-
(2008)
Nature
, vol.455
, pp. 64-71
-
-
Baek, D.1
Villén, J.2
Shin, C.3
Camargo, F.D.4
Gygi, S.P.5
Bartel, D.P.6
-
67
-
-
33845329203
-
Functional and quantitative proteomics using SILAC
-
Mann M. Functional and quantitative proteomics using SILAC. Nat Rev Mol Cell Biol. 2006;7:952-958.
-
(2006)
Nat Rev Mol Cell Biol
, vol.7
, pp. 952-958
-
-
Mann, M.1
-
68
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong SE, Blagoev B, Kratchmarova I, et al. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics. 2002; 1:376-386.
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
-
69
-
-
37349042903
-
Experimental validation of miRNA targets
-
Kuhn DE, Martin MM, Feldman DS, Terry AV Jr, Nuovo GJ, Elton TS. Experimental validation of miRNA targets. Methods. 2008;44:47-54.
-
(2008)
Methods
, vol.44
, pp. 47-54
-
-
Kuhn, D.E.1
Martin, M.M.2
Feldman, D.S.3
Terry Jr., A.V.4
Nuovo, G.J.5
Elton, T.S.6
-
70
-
-
79952674000
-
Interactome networks and human disease
-
Vidal M, Cusick ME, Barabási AL. Interactome networks and human disease. Cell. 2011;144(6):986-998.
-
(2011)
Cell
, vol.144
, Issue.6
, pp. 986-998
-
-
Vidal, M.1
Cusick, M.E.2
Barabási, A.L.3
-
71
-
-
76749148657
-
An integrative -omics approach to identify functional sub-networks in human colorectal cancer
-
Nibbe RK, Koyutürk M, Chance MR. An integrative -omics approach to identify functional sub-networks in human colorectal cancer. PLoS Comput Biol. 2010;6(1):e1000639.
-
(2010)
PLoS Comput Biol
, vol.6
, Issue.1
-
-
Nibbe, R.K.1
Koyutürk, M.2
Chance, M.R.3
-
72
-
-
71449120701
-
Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction
-
Saez-Rodriguez J, Alexopoulos LG, Epperlein J, et al. Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction. Mol Syst Biol. 2009;5:331.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 331
-
-
Saez-Rodriguez, J.1
Alexopoulos, L.G.2
Epperlein, J.3
-
73
-
-
70349944338
-
Gene expression profiling integrated into network modelling reveals heterogeneity in the mechanisms of BRCA1 tumorigenesis
-
Fernández-Ramires R, Solé X, De Cecco L, et al. Gene expression profiling integrated into network modelling reveals heterogeneity in the mechanisms of BRCA1 tumorigenesis. Br J Cancer. 2009; 101(8):1469-1480.
-
(2009)
Br J Cancer
, vol.101
, Issue.8
, pp. 1469-1480
-
-
Fernández-Ramires, R.1
Solé, X.2
de Cecco, L.3
-
74
-
-
27144530248
-
Towards a proteome-scale map of the human protein-protein interaction network
-
Rual JF, Venkatesan K, Hao T, et al. Towards a proteome-scale map of the human protein-protein interaction network. Nature. 2005;437(7062):1173-1178.
-
(2005)
Nature
, vol.437
, Issue.7062
, pp. 1173-1178
-
-
Rual, J.F.1
Venkatesan, K.2
Hao, T.3
-
75
-
-
25144498379
-
A human protein-protein interaction network: A resource for annotating the proteome
-
Stelzl U, Worm U, Lalowski M, et al. A human protein-protein interaction network: a resource for annotating the proteome. Cell. 2005;122:957-968.
-
(2005)
Cell
, vol.122
, pp. 957-968
-
-
Stelzl, U.1
Worm, U.2
Lalowski, M.3
-
76
-
-
35349024501
-
Network modeling links breast cancer susceptibility and centrosome dysfunction
-
Pujana MA, Han JD, Starita LM, et al. Network modeling links breast cancer susceptibility and centrosome dysfunction. Nat Genet. 2007;39:1338-1349.
-
(2007)
Nat Genet
, vol.39
, pp. 1338-1349
-
-
Pujana, M.A.1
Han, J.D.2
Starita, L.M.3
-
77
-
-
77951841445
-
Reprogramming of miRNA networks in cancer and leukemia
-
Volinia S, Galasso M, Costinean S, et al. Reprogramming of miRNA networks in cancer and leukemia. Genome Res. 2010;20: 589-599.
-
(2010)
Genome Res
, vol.20
, pp. 589-599
-
-
Volinia, S.1
Galasso, M.2
Costinean, S.3
-
78
-
-
78649348286
-
Integrated analysis of mutations, miRNA and mRNA expression in glioblastoma
-
Dong H, Luo L, Hong S, et al. Integrated analysis of mutations, miRNA and mRNA expression in glioblastoma. BMC Syst Biol. 2010;4:163.
-
(2010)
BMC Syst Biol
, vol.4
, pp. 163
-
-
Dong, H.1
Luo, L.2
Hong, S.3
-
79
-
-
34548339681
-
MicroRNA regulation of human protein protein interaction network
-
Liang H, Li WH. MicroRNA regulation of human protein protein interaction network. RNA. 2007;13(9):1402-1408.
-
(2007)
RNA
, vol.13
, Issue.9
, pp. 1402-1408
-
-
Liang, H.1
Li, W.H.2
-
80
-
-
44649167011
-
Characterization of microRNAregulated protein-protein interaction network
-
Hsu CW, Juan HF, Huang HC. Characterization of microRNAregulated protein-protein interaction network. Proteomics. 2008; 8(10):1975-1979.
-
(2008)
Proteomics
, vol.8
, Issue.10
, pp. 1975-1979
-
-
Hsu, C.W.1
Juan, H.F.2
Huang, H.C.3
-
81
-
-
77956308091
-
Module network inference from a cancer gene expression data set identifies microRNA regulated modules
-
Bonnet E, Tatari M, Joshi A, et al. Module network inference from a cancer gene expression data set identifies microRNA regulated modules. PLoS One. 2010;5(4):e10162.
-
(2010)
PLoS One
, vol.5
, Issue.4
-
-
Bonnet, E.1
Tatari, M.2
Joshi, A.3
-
82
-
-
56649099271
-
2008 Analysis of regulatory network topology reveals functionally distinct classes of microRNAs
-
Yu X, Lin J, Zack DJ, Mendell JT, Qian J. 2008 Analysis of regulatory network topology reveals functionally distinct classes of microRNAs. Nucleic Acids Res. 2008;36(20):6494-6503.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.20
, pp. 6494-6503
-
-
Yu, X.1
Lin, J.2
Zack, D.J.3
Mendell, J.T.4
Qian, J.5
-
83
-
-
79955690969
-
Underexpression of C-myc in adrenocortical cancer: A major pathogenic event?
-
Szabó PM, Rácz K, Igaz P. Underexpression of C-myc in adrenocortical cancer: a major pathogenic event? Horm Metab Res. 2011;43(5):297-299.
-
(2011)
Horm Metab Res
, vol.43
, Issue.5
, pp. 297-299
-
-
Szabó, P.M.1
Rácz, K.2
Igaz, P.3
-
84
-
-
75549092303
-
TransmiR: A transcription factormicroRNA regulation database
-
Database issue
-
Wang J, Lu M, Qiu C, Cui Q. TransmiR: a transcription factormicroRNA regulation database. Nucleic Acids Res. 2010;38(Database issue):D119-D122.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Wang, J.1
Lu, M.2
Qiu, C.3
Cui, Q.4
-
85
-
-
84862176128
-
Tarbase 6.0: Capturing the exponential growth of miRNA targets with experimental support NAR
-
Database issue
-
Vergoulis T, Vlachos I, Alexiou P, et al. Tarbase 6.0: capturing the exponential growth of miRNA targets with experimental support NAR. Nucleic Acids Res. 2012;40(Database issue):D222-D229.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Vergoulis, T.1
Vlachos, I.2
Alexiou, P.3
-
86
-
-
34447344908
-
Comparison of diarsenic oxide and tetraarsenic oxide on anticancer effects: Relation to the apoptosis molecular pathway. International journal of oncology
-
Chang HS, Bae SM, Kim YW, et al. Comparison of diarsenic oxide and tetraarsenic oxide on anticancer effects: relation to the apoptosis molecular pathway. International journal of oncology. Int J Oncol. 2007;30(5):1129-1135.
-
(2007)
Int J Oncol
, vol.30
, Issue.5
, pp. 1129-1135
-
-
Chang, H.S.1
Bae, S.M.2
Kim, Y.W.3
-
87
-
-
69249127529
-
Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture
-
Jothi R, Balaji S, Wuster A, et al. Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture. Mol Syst Biol. 2009;5:294.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 294
-
-
Jothi, R.1
Balaji, S.2
Wuster, A.3
-
88
-
-
4444268694
-
Efficient sampling algorithm for estimating subgraph concentrations and detecting network motifs
-
Kashtan N, Itzkovitz S, Milo R, Alon U. Efficient sampling algorithm for estimating subgraph concentrations and detecting network motifs. Bioinformatics. 2004;20(11):1746-1758.
-
(2004)
Bioinformatics
, vol.20
, Issue.11
, pp. 1746-1758
-
-
Kashtan, N.1
Itzkovitz, S.2
Milo, R.3
Alon, U.4
-
89
-
-
77958564958
-
Community landscapes: An integrative approach to determine overlapping network module hierarchy, identify key nodes and predict network dynamics
-
Kovács IA, Palotai R, Szalay MS, Csermely P. Community landscapes: an integrative approach to determine overlapping network module hierarchy, identify key nodes and predict network dynamics. PLoS One. 2010;5(9):e12528.
-
(2010)
PLoS One
, vol.5
, Issue.9
-
-
Kovács, I.A.1
Palotai, R.2
Szalay, M.S.3
Csermely, P.4
-
90
-
-
77951048682
-
Oncogenic role of miR-- 483-3p at the IGF2/483 locus
-
Veronese A, Lupini L, Consiglio J, et al. Oncogenic role of miR-- 483-3p at the IGF2/483 locus. Cancer Res. 2010;70:3140-3149.
-
(2010)
Cancer Res
, vol.70
, pp. 3140-3149
-
-
Veronese, A.1
Lupini, L.2
Consiglio, J.3
-
91
-
-
69749108909
-
Mallorca Consensus Conference participants; European Neuroendocrine Tumor Society. ENETS Consensus Guidelines for the Standards of Care in Neuroendocrine Tumors: Biochemical markers
-
O'Toole D, Grossman A, Gross D, et al. Mallorca Consensus Conference participants; European Neuroendocrine Tumor Society. ENETS Consensus Guidelines for the Standards of Care in Neuroendocrine Tumors: biochemical markers. Neuroendocrinology. 2009;90(2):194-202.
-
(2009)
Neuroendocrinology
, vol.90
, Issue.2
, pp. 194-202
-
-
O'Toole, D.1
Grossman, A.2
Gross, D.3
-
92
-
-
77954355260
-
Plasma microRNA 499 as a biomarker of acute myocardial infarction
-
Adachi T, Nakanishi M, Otsuka Y, et al. 2010 Plasma microRNA 499 as a biomarker of acute myocardial infarction. Clin Chem. 2010;56(7):1183-1185.
-
(2010)
Clin Chem
, vol.56
, Issue.7
, pp. 1183-1185
-
-
Adachi, T.1
Nakanishi, M.2
Otsuka, Y.3
-
93
-
-
78649837734
-
Plasma microRNA-122 as a biomarker for viral-, alcohol-, and chemical-related hepatic diseases
-
Zhang Y, Jia Y, Zheng R, Guo Y, Wang Y, Guo H, Fei M, Sun S. Plasma microRNA-122 as a biomarker for viral-, alcohol-, and chemical-related hepatic diseases. Clin Chem. 2010;56:1830- 1838.
-
(2010)
Clin Chem
, vol.56
, pp. 1830-1838
-
-
Zhang, Y.1
Jia, Y.2
Zheng, R.3
Guo, Y.4
Wang, Y.5
Guo, H.6
Fei, M.7
Sun, S.8
-
94
-
-
84858712300
-
Circulating miR-378 and miR-451 in serum are potential biomarkers for renal cell carcinoma
-
Redova M, Poprach A, Nekvindova J, et al. Circulating miR-378 and miR-451 in serum are potential biomarkers for renal cell carcinoma. J Transl Med. 2012;10(1):55.
-
(2012)
J Transl Med
, vol.10
, Issue.1
, pp. 55
-
-
Redova, M.1
Poprach, A.2
Nekvindova, J.3
-
95
-
-
84857131564
-
Expression profiling of cancerous and normal breast tissues identifies microRNAs that are differentially expressed in serum from patients with (metastatic) breast cancer and healthy volunteers
-
van Schooneveld E, Wouters MC, Van der Auwera I, et al. Expression profiling of cancerous and normal breast tissues identifies microRNAs that are differentially expressed in serum from patients with (metastatic) breast cancer and healthy volunteers. Breast Cancer Res. 2012;14(1):R34.
-
(2012)
Breast Cancer Res
, vol.14
, Issue.1
-
-
van Schooneveld, E.1
Wouters, M.C.2
Van der Auwera, I.3
-
96
-
-
48749122914
-
Circulating microRNAs as stable blood-based markers for cancer detection
-
Mitchell PS, Parkin RK, Kroh EM, et al. Circulating microRNAs as stable blood-based markers for cancer detection. Proc Natl Acad Sci U S A. 2008;10513-10518.
-
(2008)
Proc Natl Acad Sci U S A
, pp. 10513-10518
-
-
Mitchell, P.S.1
Parkin, R.K.2
Kroh, E.M.3
-
97
-
-
84864400776
-
Circulating microRNAs: Macro-utility as markers of prostate cancer?
-
2012
-
Selth LA, Tilley WD, Butler LM. 2012 Circulating microRNAs: macro-utility as markers of prostate cancer? Endocr Relat Cancer. 2012;19(4):R99-R113.
-
(2012)
Endocr Relat Cancer
, vol.19
, Issue.4
-
-
Selth, L.A.1
Tilley, W.D.2
Butler, L.M.3
-
98
-
-
84855502918
-
Exogenous plant MIR168a specifically targets mammalian LDLRAP1: Evidence of cross-kingdom regulation by microRNA
-
Zhang L, Hou D, Chen X, et al. Exogenous plant MIR168a specifically targets mammalian LDLRAP1: evidence of cross-kingdom regulation by microRNA. Cell Res. 2012;22(1):107-126.
-
(2012)
Cell Res
, vol.22
, Issue.1
, pp. 107-126
-
-
Zhang, L.1
Hou, D.2
Chen, X.3
-
99
-
-
84857930607
-
Profiling of circulating microRNAs: From single biomarkers to re-wired networks
-
Zampetaki A, Willeit P, Drozdov I, Kiechl S, Mayr M. Profiling of circulating microRNAs: from single biomarkers to re-wired networks. Cardiovasc Res. 2012;93:555-562.
-
(2012)
Cardiovasc Res
, vol.93
, pp. 555-562
-
-
Zampetaki, A.1
Willeit, P.2
Drozdov, I.3
Kiechl, S.4
Mayr, M.5
-
102
-
-
0842321501
-
MicroRNA targets in Drosophila
-
Enright AJ, John B, Gaul U, Tuschl T, Sander C, Marks DS. MicroRNA targets in Drosophila. Genome Biol. 2003;5:R1.
-
(2003)
Genome Biol
, vol.5
-
-
Enright, A.J.1
John, B.2
Gaul, U.3
Tuschl, T.4
Sander, C.5
Marks, D.S.6
-
103
-
-
79959805164
-
MiRWalk Database: Prediction of Possible MiRNA Binding Sites By "walking" the Genes of 3 Genomes
-
Dweep H, Sticht C, Pandey P, Gretz N. miRWalk database: prediction of possible miRNA binding sites by "walking" the genes of 3 genomes. J Biomed Inform. 2011;44(5):839-847.
-
(2011)
J Biomed Inform
, vol.44
, Issue.5
, pp. 839-847
-
-
Dweep, H.1
Sticht, C.2
Pandey, P.3
Gretz, N.4
-
104
-
-
34250805982
-
MicroRNA targeting specificity in mammals: Determinants beyond seed pairing
-
Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, Bartel DP. MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol Cell. 2007;27:91-105.
-
(2007)
Mol Cell
, vol.27
, pp. 91-105
-
-
Grimson, A.1
Farh, K.K.2
Johnston, W.K.3
Garrett-Engele, P.4
Lim, L.P.5
Bartel, D.P.6
-
105
-
-
35548996307
-
Determinants of targeting by endogenous and exogenous microRNAs and siRNAs
-
Nielsen CB, Shomron N, Sandberg R, Hornstein E, Kitzman J, Burge CB. Determinants of targeting by endogenous and exogenous microRNAs and siRNAs. RNA. 2007;13:1-18.
-
(2007)
RNA
, vol.13
, pp. 1-18
-
-
Nielsen, C.B.1
Shomron, N.2
Sandberg, R.3
Hornstein, E.4
Kitzman, J.5
Burge, C.B.6
-
106
-
-
23144449159
-
MicroInspector: A web tool for detection of miRNA binding sites in an RNA sequence
-
Web Server issue
-
Rusinov V, Baev V, Minkov IN, Tabler M. MicroInspector: a web tool for detection of miRNA binding sites in an RNA sequence. Nucleic Acids Res. 2005;33(Web Server issue):W696-W700.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Rusinov, V.1
Baev, V.2
Minkov, I.N.3
Tabler, M.4
-
107
-
-
34748821761
-
The role of site accessibility in microRNA target recognition
-
Kertesz M, Iovino N, Unnerstall U, Gaul U, Segal E. The role of site accessibility in microRNA target recognition. Nat Genet. 2007;39(10):1278-1284.
-
(2007)
Nat Genet
, vol.39
, Issue.10
, pp. 1278-1284
-
-
Kertesz, M.1
Iovino, N.2
Unnerstall, U.3
Gaul, U.4
Segal, E.5
-
108
-
-
77952671774
-
TargetSpy: A supervised machine learning approach for microRNA target prediction
-
Sturm M, Hackenberg M, Langenberger D, Frishman D. TargetSpy: a supervised machine learning approach for microRNA target prediction. BMC Bioinform. 2010;28(11):292.
-
(2010)
BMC Bioinform
, vol.28
, Issue.11
, pp. 292
-
-
Sturm, M.1
Hackenberg, M.2
Langenberger, D.3
Frishman, D.4
-
109
-
-
2442672918
-
A combined computational-experimental approach predicts human microRNA targets
-
Kiriakidou M, Nelson PT, Kouranov A, et al. A combined computational-experimental approach predicts human microRNA targets. Genes Dev. 2004;18:1165-1178.
-
(2004)
Genes Dev
, vol.18
, pp. 1165-1178
-
-
Kiriakidou, M.1
Nelson, P.T.2
Kouranov, A.3
-
110
-
-
20944450160
-
Combinatorial miRNA target predictions
-
Krek A, Grun D, Poy MN, et al. Combinatorial miRNA target predictions. Nat Genet. 2005;37:495-500.
-
(2005)
Nat Genet
, vol.37
, pp. 495-500
-
-
Krek, A.1
Grun, D.2
Poy, M.N.3
-
111
-
-
4644237189
-
Fast and effective prediction of microRNA/target duplexes
-
Rehmsmeier M, Steffen P, Hochsmann M, Giegerich R. Fast and effective prediction of microRNA/target duplexes. RNA. 2004;10: 1507-1517.
-
(2004)
RNA
, vol.10
, pp. 1507-1517
-
-
Rehmsmeier, M.1
Steffen, P.2
Hochsmann, M.3
Giegerich, R.4
-
112
-
-
36749005527
-
Using expression profiling data to identify human microRNA targets
-
Huang JC, Babak T, Corson TW, et al. Using expression profiling data to identify human microRNA targets. Nat Methods. 2007;4: 1045-1049.
-
(2007)
Nat Methods
, vol.4
, pp. 1045-1049
-
-
Huang, J.C.1
Babak, T.2
Corson, T.W.3
-
113
-
-
34347398567
-
Inference of miRNA targets using evolutionary conservation and pathway analysis
-
2007, BMC Bioinformatics. [Erratum (2007) 8(1):248]
-
Gaidatzis D, van Nimwegen E, Hausser J, Zavolan M. 2007 Inference of miRNA targets using evolutionary conservation and pathway analysis. BMC Bioinformatics. BMC Bioinformatics. [Erratum (2007) 8(1):248] 2007;8(1):69.
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.1
, pp. 69
-
-
Gaidatzis, D.1
van Nimwegen, E.2
Hausser, J.3
Zavolan, M.4
-
114
-
-
33749645474
-
miTarget: MicroRNA target gene prediction using a support vector machine
-
Kim SK, Nam JW, Rhee JK, Lee WJ, Zhang BT. miTarget: microRNA target gene prediction using a support vector machine. BMC Bioinformatics. 2006;7:411.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 411
-
-
Kim, S.K.1
Nam, J.W.2
Rhee, J.K.3
Lee, W.J.4
Zhang, B.T.5
-
115
-
-
44149083586
-
miRDB: A microRNA target prediction and functional annotation database with a wiki interface
-
Wang X. miRDB: a microRNA target prediction and functional annotation database with a wiki interface. RNA. 2008;14:1012-1017.
-
(2008)
RNA
, vol.14
, pp. 1012-1017
-
-
Wang, X.1
-
116
-
-
27544437866
-
Structure clustering features on the Sfold Web server
-
Chan CY, Lawrence CE, Ding Y. Structure clustering features on the Sfold Web server. Bioinformatics. 2005;21(20):3926-3928.
-
(2005)
Bioinformatics
, vol.21
, Issue.20
, pp. 3926-3928
-
-
Chan, C.Y.1
Lawrence, C.E.2
Ding, Y.3
-
117
-
-
33748587841
-
A pattern-based method for the identification of microRNA binding sites and their corresponding heteroduplexes
-
Miranda KC, Huynh T, Tay Y, et al. A pattern-based method for the identification of microRNA binding sites and their corresponding heteroduplexes. Cell. 2006;126(6):1203-1217.
-
(2006)
Cell
, vol.126
, Issue.6
, pp. 1203-1217
-
-
Miranda, K.C.1
Huynh, T.2
Tay, Y.3
-
118
-
-
67849101186
-
MicroRNA and mRNA integrated analysis (MMIA): A web tool for examining biological functions of microRNA expression
-
Web Server issue
-
Nam S, Li M, Choi K, Balch C, Kim S, Nephew KP. MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression. Nucleic Acids Res. 2009;37(Web Server issue):W356-W362.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Nam, S.1
Li, M.2
Choi, K.3
Balch, C.4
Kim, S.5
Nephew, K.P.6
-
119
-
-
79960681800
-
miRTar: An integrated system for identifying miRNA-target interactions in human
-
Hsu JB, Chiu CM, Hsu SD, et al. miRTar: an integrated system for identifying miRNA-target interactions in human. BMC Bioinformatics. 2011;12:300.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 300
-
-
Hsu, J.B.1
Chiu, C.M.2
Hsu, S.D.3
-
120
-
-
33846053464
-
miRGen: A database for the study of animal microRNA genomic organization and function
-
Database issue
-
Megraw M, Sethupathy P, Corda B, Hatzigeorgiou AG. miRGen: a database for the study of animal microRNA genomic organization and function. Nucleic Acids Res. 2007;35(Database issue): D149-D55.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Megraw, M.1
Sethupathy, P.2
Corda, B.3
Hatzigeorgiou, A.G.4
-
121
-
-
67649110069
-
Human microRNA target analysis and gene ontology clustering by GOmir, a novel stand-alone application
-
Roubelakis MG, Zotos P, Papachristoudis G, et al. Human microRNA target analysis and gene ontology clustering by GOmir, a novel stand-alone application. BMC Bioinformatics. 2009;10(Suppl 6):S20.
-
(2009)
BMC Bioinformatics
, vol.10
, Issue.SUPPL. 6
-
-
Roubelakis, M.G.1
Zotos, P.2
Papachristoudis, G.3
-
122
-
-
33644873722
-
miRNAMap: Genomic maps of microRNA genes and their target genes in mammalian genomes
-
Database issue
-
Hsu PW, Huang HD, Hsu SD, et al. miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes. Nucleic Acids Res. 2006;34(Database issue):D135-D139.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Hsu, P.W.1
Huang, H.D.2
Hsu, S.D.3
-
123
-
-
58149186499
-
miRecords: An integrated resource for microRNA-target interactions
-
Database issue
-
Xiao F, Zuo Z, Cai G, Kang S, Gao X, Li T. miRecords: an integrated resource for microRNA-target interactions. Nucleic Acids Res. 2009;37(Database issue):D105-D110.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Xiao, F.1
Zuo, Z.2
Cai, G.3
Kang, S.4
Gao, X.5
Li, T.6
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