-
1
-
-
0016355478
-
A new look at the statistical model identification
-
Akaike, H. 1974. A new look at the statistical model identification. IEEE Transactions on Automatic Control 19: 716-723.
-
(1974)
IEEE Transactions on Automatic Control
, vol.19
, pp. 716-723
-
-
Akaike, H.1
-
2
-
-
82955201613
-
Origin and diversification of major clades in parmelioid lichens (Parmeliaceae, Ascomycota) during the Paleogene inferred by Bayesian analysis
-
Amo de Paz, G., P. Cubas, P. K. Divakar, H. T. Lumbsch, and A. Crespo. 2011. Origin and diversification of major clades in parmelioid lichens (Parmeliaceae, Ascomycota) during the Paleogene inferred by Bayesian analysis. PLoS ONE 6: e28161.
-
(2011)
PLoS ONE
, vol.6
-
-
Amo de Paz, G.1
Cubas, P.2
Divakar, P.K.3
Lumbsch, H.T.4
Crespo, A.5
-
3
-
-
84860205007
-
Miocene dispersal drives island radiations in the palm tribe Trachycarpeae (Arecaceae)
-
Bacon, C. D., W. J. Baker, and M. P. Simmons. 2012. Miocene dispersal drives island radiations in the palm tribe Trachycarpeae (Arecaceae). Systematic Biology 61: 426-442.
-
(2012)
Systematic Biology
, vol.61
, pp. 426-442
-
-
Bacon, C.D.1
Baker, W.J.2
Simmons, M.P.3
-
4
-
-
0036699888
-
The utility of incongruence length difference test
-
Barker, F. K., and F. Lutzoni. 2002. The utility of incongruence length difference test. Systematic Biology 51: 625-637.
-
(2002)
Systematic Biology
, vol.51
, pp. 625-637
-
-
Barker, F.K.1
Lutzoni, F.2
-
5
-
-
0037012937
-
Planetary biology: Paleontological, geological, and molecular histories of life
-
Benner, S. A., M. D. Caraco, J. M. Thomson, and E. A. Gaucher. 2002. Planetary biology: Paleontological, geological, and molecular histories of life. Science 296: 864-868.
-
(2002)
Science
, vol.296
, pp. 864-868
-
-
Benner, S.A.1
Caraco, M.D.2
Thomson, J.M.3
Gaucher, E.A.4
-
6
-
-
77955349439
-
Dating the molecular clock in fungi-How close are we?
-
Berbee, M. L., and J. W. Taylor. 2010. Dating the molecular clock in fungi-How close are we? Fungal Biology Reviews 24: 1-16.
-
(2010)
Fungal Biology Reviews
, vol.24
, pp. 1-16
-
-
Berbee, M.L.1
Taylor, J.W.2
-
7
-
-
69149105958
-
Phylogenetics of Olea (Oleaceae) based on plastid and nuclear ribosomal DNA sequences: Tertiary climatic shifts and lineage differentiation times
-
Besnard, G., R. Rubio de Casas, P. Christin, and P. Vargas. 2009. Phylogenetics of Olea (Oleaceae) based on plastid and nuclear ribosomal DNA sequences: Tertiary climatic shifts and lineage differentiation times. Annals of Botany 104: 143-160.
-
(2009)
Annals of Botany
, vol.104
, pp. 143-160
-
-
Besnard, G.1
Rubio de Casas, R.2
Christin, P.3
Vargas, P.4
-
8
-
-
4544227012
-
Melanelixia and Melanohalea, two new genera segregated from Melanelia (Parmeliaceae) based on molecular and morphological data
-
Blanco, O., A. Crespo, P. K. Divakar, T. L. Esslinger, D. L. Hawksworth, and H. T. Lumbsch. 2004. Melanelixia and Melanohalea, two new genera segregated from Melanelia (Parmeliaceae) based on molecular and morphological data. Mycological Research 108: 873-884.
-
(2004)
Mycological Research
, vol.108
, pp. 873-884
-
-
Blanco, O.1
Crespo, A.2
Divakar, P.K.3
Esslinger, T.L.4
Hawksworth, D.L.5
Lumbsch, H.T.6
-
9
-
-
33645010969
-
Major clades of parmeliold lichens (Parmeliaceae, Ascomycota) and the evolution of their morphological and chemical diversity
-
Blanco, O., A. Crespo, R. H. Ree, and H. T. Lumbsch. 2006. Major clades of parmeliold lichens (Parmeliaceae, Ascomycota) and the evolution of their morphological and chemical diversity. Molecular Phylogenetics and Evolution 39: 52-69.
-
(2006)
Molecular Phylogenetics and Evolution
, vol.39
, pp. 52-69
-
-
Blanco, O.1
Crespo, A.2
Ree, R.H.3
Lumbsch, H.T.4
-
10
-
-
0036005521
-
Combined data, Bayesian phylogenetics, and the origin of the New Zealand cicada genera
-
Buckley, T. R., P. Arensburger, C. Simon, and G. K. Chambers. 2002. Combined data, Bayesian phylogenetics, and the origin of the New Zealand cicada genera. Systematic Biology 51: 4-18.
-
(2002)
Systematic Biology
, vol.51
, pp. 4-18
-
-
Buckley, T.R.1
Arensburger, P.2
Simon, C.3
Chambers, G.K.4
-
11
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana, J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution 17: 540-552.
-
(2000)
Molecular Biology and Evolution
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
12
-
-
0032124966
-
A molecular approach to the circumscription and evaluation of some genera segregated from Parmelia s. lat
-
Crespo, A., and O. F. Cubero. 1998. A molecular approach to the circumscription and evaluation of some genera segregated from Parmelia s. lat. Lichenologist 30: 369-380.
-
(1998)
Lichenologist
, vol.30
, pp. 369-380
-
-
Crespo, A.1
Cubero, O.F.2
-
13
-
-
85007337375
-
Phylogenetic generic classification of parmelioid lichens (Parmeliaceae, Ascomycota) based on molecular, morphological and chemical evidence
-
Crespo, A., F. Kauff, P. K. Divakar, R. del Prado, S. Pérez-Ortega, G. Amo de Paz, Z. Ferencova, et al. 2010a. Phylogenetic generic classification of parmelioid lichens (Parmeliaceae, Ascomycota) based on molecular, morphological and chemical evidence. Taxon 59: 1735-1753.
-
(2010)
Taxon
, vol.59
, pp. 1735-1753
-
-
Crespo, A.1
Kauff, F.2
Divakar, P.K.3
del Prado, R.4
Pérez-Ortega, S.5
Amo de Paz, G.6
Ferencova, Z.7
-
14
-
-
34447295941
-
Testing morphology-based hypotheses of phylogenetic relationships in Parmeliaceae (Ascomycota) using three ribosomal markers and the nuclear RPB1 gene
-
Crespo, A., H. T. Lumbsch, J. E. Mattsson, O. Blanco, P. K. Divakar, K. Articus, E. Wiklund, P. A. Bawingan, and M. Wedin. 2007. Testing morphology-based hypotheses of phylogenetic relationships in Parmeliaceae (Ascomycota) using three ribosomal markers and the nuclear RPB1 gene. Molecular Phylogenetics and Evolution 44: 812-824.
-
(2007)
Molecular Phylogenetics and Evolution
, vol.44
, pp. 812-824
-
-
Crespo, A.1
Lumbsch, H.T.2
Mattsson, J.E.3
Blanco, O.4
Divakar, P.K.5
Articus, K.6
Wiklund, E.7
Bawingan, P.A.8
Wedin, M.9
-
15
-
-
0034836861
-
The potential of mitochondrial DNA for establishing phylogeny and stabilising generic concepts in the parmelioid lichens
-
Crespo, A., O. Blanco, and D. L. Hawksworth. 2001. The potential of mitochondrial DNA for establishing phylogeny and stabilising generic concepts in the parmelioid lichens. Taxon 50: 807-819.
-
(2001)
Taxon
, vol.50
, pp. 807-819
-
-
Crespo, A.1
Blanco, O.2
Hawksworth, D.L.3
-
16
-
-
84857322343
-
Generic concepts in parmelioid lichens, and the phylogenetic value of characters used in their circumscription
-
Crespo, A., P. K. Divakar, and D. L. Hawksworth. 2011. Generic concepts in parmelioid lichens, and the phylogenetic value of characters used in their circumscription. Lichenologist 43: 511-535.
-
(2011)
Lichenologist
, vol.43
, pp. 511-535
-
-
Crespo, A.1
Divakar, P.K.2
Hawksworth, D.L.3
-
17
-
-
77954690731
-
Austroparmelina, a new Australasian lineage in parmelioid lichens (Parmeliaceae, Ascomycota)
-
Crespo, A., Z. Ferencova, S. Pérez-Ortega, J. A. Elix, and P. K. Divakar. 2010b. Austroparmelina, a new Australasian lineage in parmelioid lichens (Parmeliaceae, Ascomycota). Systematics and Biodiversity 8: 209-221.
-
(2010)
Systematics and Biodiversity
, vol.8
, pp. 209-221
-
-
Crespo, A.1
Ferencova, Z.2
Pérez-Ortega, S.3
Elix, J.A.4
Divakar, P.K.5
-
18
-
-
8144226824
-
Radiation of the Australian flora: What can comparisons of molecular phylogenies across multiple taxa tell us about the evolution of diversity in present-day communities?
-
Crisp, M., L. Cook, and D. Steane. 2004. Radiation of the Australian flora: What can comparisons of molecular phylogenies across multiple taxa tell us about the evolution of diversity in present-day communities? Philosophical Transactions of the Royal Society, B, Biological Sciences 359: 1551-1571.
-
(2004)
Philosophical Transactions of the Royal Society, B, Biological Sciences
, vol.359
, pp. 1551-1571
-
-
Crisp, M.1
Cook, L.2
Steane, D.3
-
19
-
-
77953598029
-
Genetic distances within and among species in monophyletic lineages of Parmeliaceae (Ascomycota) as a tool for taxon delimitation
-
Del-Prado, R., P. Cubas, H. T. Lumbsch, P. K. Divakar, O. Blanco, G. Amo de Paz, M. C. Molina, and A. Crespo. 2010. Genetic distances within and among species in monophyletic lineages of Parmeliaceae (Ascomycota) as a tool for taxon delimitation. Molecular Phylogenetics and Evolution 56: 125-133.
-
(2010)
Molecular Phylogenetics and Evolution
, vol.56
, pp. 125-133
-
-
Del-Prado, R.1
Cubas, P.2
Lumbsch, H.T.3
Divakar, P.K.4
Blanco, O.5
Amo de Paz, G.6
Molina, M.C.7
Crespo, A.8
-
20
-
-
2942534605
-
Influence of Tertiary paleoenvironmental changes on the diversification of South American mammals: A relaxed molecular clock study within xenarthrans
-
Delsuc, F., S. F. Vizcaino, and E. J. P. Douzery. 2004. Influence of Tertiary paleoenvironmental changes on the diversification of South American mammals: A relaxed molecular clock study within xenarthrans. BMC Evolutionary Biology 4: 11.
-
(2004)
BMC Evolutionary Biology
, vol.4
, pp. 11
-
-
Delsuc, F.1
Vizcaino, S.F.2
Douzery, E.J.P.3
-
21
-
-
82955237389
-
Insights into the historical construction of species-rich Mesoamerican seasonally dry tropical forests: The diversification of Bursera (Burseraceae, Sapindales)
-
De-Nova, J. A., R. Medina, J. C. Montero, A. Weeks, J. A. Rosell, M. E. Olson, L. E. Eguiarte, and S. Magallón. 2012. Insights into the historical construction of species-rich Mesoamerican seasonally dry tropical forests: The diversification of Bursera (Burseraceae, Sapindales). New Phytologist 193: 276-287.
-
(2012)
New Phytologist
, vol.193
, pp. 276-287
-
-
De-Nova, J.A.1
Medina, R.2
Montero, J.C.3
Weeks, A.4
Rosell, J.A.5
Olson, M.E.6
Eguiarte, L.E.7
Magallón, S.8
-
22
-
-
0026619461
-
Numerous group I introns with variable distributions in the ribosomal DNA of a lichen fungus
-
DePriest, P. T., and M. D. Been. 1992. Numerous group I introns with variable distributions in the ribosomal DNA of a lichen fungus. Journal of Molecular Biology 228: 315-321.
-
(1992)
Journal of Molecular Biology
, vol.228
, pp. 315-321
-
-
DePriest, P.T.1
Been, M.D.2
-
23
-
-
13444267848
-
Molecular phylogenetic studies on the Parmotrema reticulatum (syn. Rimelia reticulata) complex, including the confirmation of P. pseudoreticulatum as a distinct species
-
Divakar, P. K., O. Blanco, D. L. Hawksworth, and A. Crespo. 2005. Molecular phylogenetic studies on the Parmotrema reticulatum (syn. Rimelia reticulata) complex, including the confirmation of P. pseudoreticulatum as a distinct species. Lichenologist 37: 55-65.
-
(2005)
Lichenologist
, vol.37
, pp. 55-65
-
-
Divakar, P.K.1
Blanco, O.2
Hawksworth, D.L.3
Crespo, A.4
-
24
-
-
33745806934
-
Phylogenetic significance of morphological characters in the tropical Hypotrachyna clade of parmelioid lichens (Parmeliaceae, Ascomycota)
-
Divakar, P. K., A. Crespo, O. Blanco, and H. T. Lumbsch. 2006. Phylogenetic significance of morphological characters in the tropical Hypotrachyna clade of parmelioid lichens (Parmeliaceae, Ascomycota). Molecular Phylogenetics and Evolution 40: 448-458.
-
(2006)
Molecular Phylogenetics and Evolution
, vol.40
, pp. 448-458
-
-
Divakar, P.K.1
Crespo, A.2
Blanco, O.3
Lumbsch, H.T.4
-
25
-
-
79955379190
-
Molecular phylogenetic studies reveal an undescribed species within the North American concept of Melanelixia glabra (Parmeliaceae)
-
Divakar, P. K., G. Figueras, N. Hladun, and A. Crespo. 2010b. Molecular phylogenetic studies reveal an undescribed species within the North American concept of Melanelixia glabra (Parmeliaceae). Fungal Diversity 42: 47-55.
-
(2010)
Fungal Diversity
, vol.42
, pp. 47-55
-
-
Divakar, P.K.1
Figueras, G.2
Hladun, N.3
Crespo, A.4
-
26
-
-
77950144955
-
Remototrachyna, a newly recognized tropical lineage of lichens in the Hypotrachyna clade (Parmeliaceae, Ascomycota), originated in the Indian subcontinent
-
Divakar, P. K., H. T. Lumbsch, Z. Ferencova, R. Del Prado, and A. Crespo. 2010a. Remototrachyna, a newly recognized tropical lineage of lichens in the Hypotrachyna clade (Parmeliaceae, Ascomycota), originated in the Indian subcontinent. American Journal of Botany 97: 579-590.
-
(2010)
American Journal of Botany
, vol.97
, pp. 579-590
-
-
Divakar, P.K.1
Lumbsch, H.T.2
Ferencova, Z.3
Del Prado, R.4
Crespo, A.5
-
27
-
-
84875157180
-
Parmelioid lichens in India (a revisionary study). Bishen Singh Mahendra Pal Singh, Dehra Dun, India. Divakar, P. K., D. K. Upreti, and J. A. Elix. 2001. New species and new records in the lichen family Parmeliaceae (Ascomycotina) from India
-
Divakar, P. K., and D. K. Upreti. 2005. Parmelioid lichens in India (a revisionary study). Bishen Singh Mahendra Pal Singh, Dehra Dun, India. Divakar, P. K., D. K. Upreti, and J. A. Elix. 2001. New species and new records in the lichen family Parmeliaceae (Ascomycotina) from India. Mycotaxon 80: 356-362.
-
(2005)
Mycotaxon
, vol.80
, pp. 356-362
-
-
Divakar, P.K.1
Upreti, D.K.2
-
28
-
-
0036005517
-
Increased congruence does not necessarily indicate increased phylogenetic accuracy-The behavior of the incongruence length difference test in mixed-model analyses
-
Dowton, M., and A. D. Austin. 2002. Increased congruence does not necessarily indicate increased phylogenetic accuracy-The behavior of the incongruence length difference test in mixed-model analyses. Systematic Biology 51: 19-31.
-
(2002)
Systematic Biology
, vol.51
, pp. 19-31
-
-
Dowton, M.1
Austin, A.D.2
-
30
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond, A. J., and A. Rambaut. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7: 214.
-
(2007)
BMC Evolutionary Biology
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
31
-
-
0034255125
-
Evolutionary consequences of changes in species' geographical distributions driven by Milankovitch climate oscillations
-
Dynesius, M., and R. Jansson. 2000. Evolutionary consequences of changes in species' geographical distributions driven by Milankovitch climate oscillations. Proceedings of the National Academy of Sciences, USA 97: 9115-9120.
-
(2000)
Proceedings of the National Academy of Sciences, USA
, vol.97
, pp. 9115-9120
-
-
Dynesius, M.1
Jansson, R.2
-
32
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar, R. C. 2004. MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792-1797.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
33
-
-
0028589783
-
Oligocene-Miocene extinction and geographic restriction of Caribbean corals: Roles of turbidity, temperature, and nutrients
-
Edinger, E. N., and M. J. Risk. 1994. Oligocene-Miocene extinction and geographic restriction of Caribbean corals: Roles of turbidity, temperature, and nutrients. Palaios 9: 576-598.
-
(1994)
Palaios
, vol.9
, pp. 576-598
-
-
Edinger, E.N.1
Risk, M.J.2
-
34
-
-
0010671796
-
Lichens-Lecanorales 2, Parmeliaceae
-
Elix, J. A. 1994. Lichens-Lecanorales 2, Parmeliaceae. Flora of Australia 55: 1-360.
-
(1994)
Flora of Australia
, vol.55
, pp. 1-360
-
-
Elix, J.A.1
-
36
-
-
0001797335
-
A new status for brown Parmeliae
-
Esslinger, T. L. 1978. A new status for brown Parmeliae. Mycotaxon 7: 45-54.
-
(1978)
Mycotaxon
, vol.7
, pp. 45-54
-
-
Esslinger, T.L.1
-
37
-
-
1442314070
-
The brown parmelia type specimens of A. N. Oxner
-
Esslinger, T. L. 1992. The brown parmelia type specimens of A. N. Oxner. Lichenologist 24: 13-20.
-
(1992)
Lichenologist
, vol.24
, pp. 13-20
-
-
Esslinger, T.L.1
-
38
-
-
84989432221
-
Testing significance of incongruence
-
Farris, J. S., M. Källersjö, A. G. Kluge, and C. Bult. 1994. Testing significance of incongruence. Cladistics 10: 315-319.
-
(1994)
Cladistics
, vol.10
, pp. 315-319
-
-
Farris, J.S.1
Källersjö, M.2
Kluge, A.G.3
Bult, C.4
-
39
-
-
0000461280
-
Confidence limits on phylogenies-An approach using the bootstrap
-
Felsenstein, J. 1985. Confidence limits on phylogenies-An approach using the bootstrap. Evolution 39: 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
40
-
-
33846442007
-
Patterns of group I intron presence in nuclear SSU rDNA of the lichen family Parmeliaceae
-
Gutierrez, G., O. Blanco, P. K. Divakar, H. T. Lumbsch, and A. Crespo. 2007. Patterns of group I intron presence in nuclear SSU rDNA of the lichen family Parmeliaceae. Journal of Molecular Evolution 64: 181-195.
-
(2007)
Journal of Molecular Evolution
, vol.64
, pp. 181-195
-
-
Gutierrez, G.1
Blanco, O.2
Divakar, P.K.3
Lumbsch, H.T.4
Crespo, A.5
-
41
-
-
0010568225
-
The lichen thallus: A symbiotic phenotype of nutritionally specialized fungi and its response to gall producers
-
In M. A. J. Williams [ed.], Clarendon Press, Oxford, UK
-
Hawksworth, D. L., and R. Honegger. 1994. The lichen thallus: A symbiotic phenotype of nutritionally specialized fungi and its response to gall producers. In M. A. J. Williams [ed.], Plant galls: Organisms, interactions, populations, 77-98. Clarendon Press, Oxford, UK.
-
(1994)
Plant galls: Organisms, interactions, populations
, pp. 77-98
-
-
Hawksworth, D.L.1
Honegger, R.2
-
42
-
-
12044253190
-
An empirical test of bootstraping as a method for assessing confidence in phylogenetic analysis
-
Hillis, D. M., and J. J. Bull. 1993. An empirical test of bootstraping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42: 182-192.
-
(1993)
Systematic Biology
, vol.42
, pp. 182-192
-
-
Hillis, D.M.1
Bull, J.J.2
-
43
-
-
34347329101
-
Calibrating molecular estimates of substitution rates and divergence times in birds
-
Ho, S. Y. W. 2007. Calibrating molecular estimates of substitution rates and divergence times in birds. Journal of Avian Biology 38: 409-414.
-
(2007)
Journal of Avian Biology
, vol.38
, pp. 409-414
-
-
Ho, S.Y.W.1
-
44
-
-
70350103638
-
Accounting for calibration uncertainty in phylogenetic estimates of evolutionary divergence times
-
Ho, S. Y. W., and M. J. Phillips. 2009. Accounting for calibration uncertainty in phylogenetic estimates of evolutionary divergence times. Systematic Biology 58: 367-380.
-
(2009)
Systematic Biology
, vol.58
, pp. 367-380
-
-
Ho, S.Y.W.1
Phillips, M.J.2
-
45
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck, J. P., and F. Ronquist. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
46
-
-
0036919019
-
The fate of clades in a world of recurrent climatic change: Milankovitch oscillations and evolution
-
Jansson, R., and M. Dynesius. 2002. The fate of clades in a world of recurrent climatic change: Milankovitch oscillations and evolution. Annual Review of Ecology, Evolution and Systematics 33: 741-777.
-
(2002)
Annual Review of Ecology, Evolution and Systematics
, vol.33
, pp. 741-777
-
-
Jansson, R.1
Dynesius, M.2
-
47
-
-
0003804933
-
-
CAB International, Wallingford, UK
-
Kirk, P. M., P. F. Cannon, M. W. Minter, and J. A. Stalpers. 2008. Dictionary of the Fungi, 10th ed. CAB International, Wallingford, UK.
-
(2008)
Dictionary of the Fungi, 10th ed
-
-
Kirk, P.M.1
Cannon, P.F.2
Minter, M.W.3
Stalpers, J.A.4
-
48
-
-
84865972741
-
Miocene and Pliocene dominated diversification of the lichen-forming fungal genus Melanohalea (Parmeliaceae, Ascomycota) and Pleistocene population expansions
-
Leavitt, S. D., T. L. Esslinger, P. K. Divakar, and H. T. Lumbsch. 2012a. Miocene and Pliocene dominated diversification of the lichen-forming fungal genus Melanohalea (Parmeliaceae, Ascomycota) and Pleistocene population expansions. BMC Evolutionary Biology 12: 176.
-
(2012)
BMC Evolutionary Biology
, vol.12
, pp. 176
-
-
Leavitt, S.D.1
Esslinger, T.L.2
Divakar, P.K.3
Lumbsch, H.T.4
-
49
-
-
84869830317
-
Miocene divergence, cryptic lineages, and contrasting distribution patterns in common camouflage lichen fungi (Parmeliaceae, Ascomycota)
-
Leavitt, S. D., T. L. Esslinger, P. K. Divakar, and H. T. Lumbsch. 2012b. Miocene divergence, cryptic lineages, and contrasting distribution patterns in common camouflage lichen fungi (Parmeliaceae, Ascomycota). Biological Journal of the Linnean Society 107: 920-937.
-
(2012)
Biological Journal of the Linnean Society
, vol.107
, pp. 920-937
-
-
Leavitt, S.D.1
Esslinger, T.L.2
Divakar, P.K.3
Lumbsch, H.T.4
-
50
-
-
84875130945
-
Multilocus phylogeny of the lichen-forming fungal genus Melanohalea (Parmeliaceae, Ascomycota): Insights on diversity, distributions, and a comparison of species tree and concatenated topologies
-
Leavitt, S. D., T. L. Esslinger, T. Spribille, P. K. Divakar, and H. T. Lumbsch. 2012c. Multilocus phylogeny of the lichen-forming fungal genus Melanohalea (Parmeliaceae, Ascomycota): Insights on diversity, distributions, and a comparison of species tree and concatenated topologies. Molecular Phylogenetics and Evolution.
-
(2012)
Molecular Phylogenetics and Evolution
-
-
Leavitt, S.D.1
Esslinger, T.L.2
Spribille, T.3
Divakar, P.K.4
Lumbsch, H.T.5
-
51
-
-
72449194236
-
Fungi evolved right on track
-
Lücking, R., S. Huhndorf, D. H. Pfister, E. R. Plata, and H. T. Lumbsch. 2009. Fungi evolved right on track. Mycologia 101: 810-822.
-
(2009)
Mycologia
, vol.101
, pp. 810-822
-
-
Lücking, R.1
Huhndorf, S.2
Pfister, D.H.3
Plata, E.R.4
Lumbsch, H.T.5
-
52
-
-
53649108009
-
Accelerated evolutionary rates in tropical and oceanic parmelioid lichens (Ascomycota)
-
Lumbsch, H. T., A. L. Hipp, P. K. Divakar, O. Blanco, and A. Crespo. 2008. Accelerated evolutionary rates in tropical and oceanic parmelioid lichens (Ascomycota). BMC Evolutionary Biology 8: 257.
-
(2008)
BMC Evolutionary Biology
, vol.8
, pp. 257
-
-
Lumbsch, H.T.1
Hipp, A.L.2
Divakar, P.K.3
Blanco, O.4
Crespo, A.5
-
53
-
-
32044471897
-
Assembling the fungal tree of life: Progress, classification, and evolution of subcellular traits
-
Lutzoni, F., F. Kauf, C. J. Cox, D. McLaughlin, G. Celio, B. Dentinger, M. Padamsee, et al. 2004. Assembling the fungal tree of life: Progress, classification, and evolution of subcellular traits. American Journal of Botany 91: 1446-1480.
-
(2004)
American Journal of Botany
, vol.91
, pp. 1446-1480
-
-
Lutzoni, F.1
Kauf, F.2
Cox, C.J.3
McLaughlin, D.4
Celio, G.5
Dentinger, B.6
Padamsee, M.7
-
54
-
-
77953773178
-
Using fossils to break long branches in molecular dating: A comparison of relaxed clock applied to the origin of angiosperms
-
Magallón, S. 2010. Using fossils to break long branches in molecular dating: A comparison of relaxed clock applied to the origin of angiosperms. Systematic Biology 59: 384-399.
-
(2010)
Systematic Biology
, vol.59
, pp. 384-399
-
-
Magallón, S.1
-
55
-
-
0030311441
-
Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae)
-
Mason-Gamer, R. J., and E. A. Kellogg. 1996. Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae). Systematic Biology 45: 524-545.
-
(1996)
Systematic Biology
, vol.45
, pp. 524-545
-
-
Mason-Gamer, R.J.1
Kellogg, E.A.2
-
56
-
-
0000903328
-
Impact of the Eocene on the evolution of Pinus L
-
Millar, C. I. 1993. Impact of the Eocene on the evolution of Pinus L. Annals of the Missouri Botanical Garden 80: 471-498.
-
(1993)
Annals of the Missouri Botanical Garden
, vol.80
, pp. 471-498
-
-
Millar, C.I.1
-
57
-
-
0002646902
-
Palynological evidence for Tertiary plant dispersals in the SE Asian region in relation to plate tectonics and climate
-
In R. Hall and J. D. Holloway [eds.], Backhuys, Leiden, Netherlands
-
Morley, R. J. 1998. Palynological evidence for Tertiary plant dispersals in the SE Asian region in relation to plate tectonics and climate. In R. Hall and J. D. Holloway [eds.], Biogeography and geological evolution of SE Asia, 211-234. Backhuys, Leiden, Netherlands.
-
(1998)
Biogeography and geological evolution of SE Asia
, pp. 211-234
-
-
Morley, R.J.1
-
60
-
-
27244449500
-
Cenozoic continental climatic evolution of Central Europe
-
Mosbrugger, V., T. Utescher, and D. Dilcher. 2005. Cenozoic continental climatic evolution of Central Europe. Proceedings of the National Academy of Sciences, USA 102: 14964-14969.
-
(2005)
Proceedings of the National Academy of Sciences, USA
, vol.102
, pp. 14964-14969
-
-
Mosbrugger, V.1
Utescher, T.2
Dilcher, D.3
-
61
-
-
0035909255
-
Orbitally induced oscillations in the East Antarctic ice sheet at the Oligocene/Miocene boundary
-
Naish, T. R., K. J. Woolfe, P. J. Barrett, G. S. Wilson, C. Atkins, S. M. Bohaty, C. J. Bucker, M. Claps, et al. 2001. Orbitally induced oscillations in the East Antarctic ice sheet at the Oligocene/Miocene boundary. Nature 413: 719-723.
-
(2001)
Nature
, vol.413
, pp. 719-723
-
-
Naish, T.R.1
Woolfe, K.J.2
Barrett, P.J.3
Wilson, G.S.4
Atkins, C.5
Bohaty, S.M.6
Bucker, C.J.7
Claps, M.8
-
62
-
-
84857252796
-
The cetrarioid core group revisited (Lecanorales: Parmeliaceae)
-
Nelsen, M. P., N. Chavez, E. Sackett-hermann, A. Thell, T. Randlane, P. K. Divakar, V. J. Rico, and H. T. Lumbsch. 2011. The cetrarioid core group revisited (Lecanorales: Parmeliaceae). Lichenologist 43: 537-551.
-
(2011)
Lichenologist
, vol.43
, pp. 537-551
-
-
Nelsen, M.P.1
Chavez, N.2
Sackett-hermann, E.3
Thell, A.4
Randlane, T.5
Divakar, P.K.6
Rico, V.J.7
Lumbsch, H.T.8
-
63
-
-
39149141072
-
AWTY (Are We There Yet?): A system for graphical exploration of MCMC convergence in Bayesian phylogenetics
-
Nylander, J. A. A., J. C. Wilgenbusch, D. L. Warren, and D. L. Swofford. 2007. AWTY (Are We There Yet?): A system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 24: 581-583.
-
(2007)
Bioinformatics
, vol.24
, pp. 581-583
-
-
Nylander, J.A.A.1
Wilgenbusch, J.C.2
Warren, D.L.3
Swofford, D.L.4
-
64
-
-
0008108209
-
-
British Lichen Society, London, UK
-
Orange, A., P. W. James, and F. J. White. 2001. Microchemical methods for the identification of lichens. British Lichen Society, London, UK.
-
(2001)
Microchemical methods for the identification of lichens
-
-
Orange, A.1
James, P.W.2
White, F.J.3
-
65
-
-
21244448833
-
Global distribution of the European species of the lichen genus Melanelia Essl
-
Otte, V., T. L. Esslinger, and B. Litterski. 2005. Global distribution of the European species of the lichen genus Melanelia Essl. Journal of Biogeography 32: 1221-1241.
-
(2005)
Journal of Biogeography
, vol.32
, pp. 1221-1241
-
-
Otte, V.1
Esslinger, T.L.2
Litterski, B.3
-
66
-
-
0342521333
-
Fossil Parmelia in new world amber
-
Poinar, G. O., E. B. Peterson, and J. L. Platt Jr. 2000. Fossil Parmelia in new world amber. Lichenologist (London, England) 32: 263-269.
-
(2000)
Lichenologist (London, England)
, vol.32
, pp. 263-269
-
-
Poinar, G.O.1
Peterson, E.B.2
Platt Jr., J.L.3
-
67
-
-
45849154165
-
jModelTest: Phylogenetic model averaging
-
Posada, D. 2008. jModelTest: Phylogenetic model averaging. Molecular Biology and Evolution 25: 1253-1256.
-
(2008)
Molecular Biology and Evolution
, vol.25
, pp. 1253-1256
-
-
Posada, D.1
-
68
-
-
0035527410
-
Selecting the best-fit model of nucleotide substitution
-
Posada, D., and K. A. Crandall. 2001. Selecting the best-fit model of nucleotide substitution. Systematic Biology 50: 580-601.
-
(2001)
Systematic Biology
, vol.50
, pp. 580-601
-
-
Posada, D.1
Crandall, K.A.2
-
69
-
-
70350132686
-
Floristic changes in the Iberian Peninsula and Balearic Islands (south-west Europe) during the Cenozoic
-
Postigo Mijarra, J. M., E. Barron, F. G. Manzaneque, and C. Morla. 2009. Floristic changes in the Iberian Peninsula and Balearic Islands (south-west Europe) during the Cenozoic. Journal of Biogeography 36: 2025-2043.
-
(2009)
Journal of Biogeography
, vol.36
, pp. 2025-2043
-
-
Postigo Mijarra, J.M.1
Barron, E.2
Manzaneque, F.G.3
Morla, C.4
-
70
-
-
33745001667
-
Arrival and diversification of caviomorph rodents and platyrrhine primates in South America
-
Poux, C., P. Chevret, D. Huchon, W. D. DeJong, and E. J. P. Douzery. 2006. Arrival and diversification of caviomorph rodents and platyrrhine primates in South America. Systematic Biology 55: 228-244.
-
(2006)
Systematic Biology
, vol.55
, pp. 228-244
-
-
Poux, C.1
Chevret, P.2
Huchon, D.3
DeJong, W.D.4
Douzery, E.J.P.5
-
71
-
-
80054961827
-
Lichen systematics: The role of morphological and molecular data to reconstruct phylogenetic relationships
-
Printzen, C. 2010. Lichen systematics: The role of morphological and molecular data to reconstruct phylogenetic relationships. Progress in Botany 71: 233-275.
-
(2010)
Progress in Botany
, vol.71
, pp. 233-275
-
-
Printzen, C.1
-
72
-
-
84875151897
-
-
Website
-
Prothero, D. R. 2004. Tertiary history. Website http://www.donaldprothero. com/files/47440727.pdf.
-
(2004)
Tertiary history
-
-
Prothero, D.R.1
-
76
-
-
0036205377
-
TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
-
Schmidt, H. A., K. Strimmer, M. Vingron, and A. von Haeseler. 2002. TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18: 502-504.
-
(2002)
Bioinformatics
, vol.18
, pp. 502-504
-
-
Schmidt, H.A.1
Strimmer, K.2
Vingron, M.3
von Haeseler, A.4
-
77
-
-
75149170450
-
New primers for promising single-copy genes in fungal phylogenies and systematics
-
Schmitt, I., A. Crespo, P. K. Divakar, J. D. Fankhauser, E. HermanSACKETT, K. Kalb, M. P. Nelsen, et al. 2009. New primers for promising single-copy genes in fungal phylogenies and systematics. Persoonia 23: 35-40.
-
(2009)
Persoonia
, vol.23
, pp. 35-40
-
-
Schmitt, I.1
Crespo, A.2
Divakar, P.K.3
Fankhauser, J.D.4
Sackett, E.H.5
Kalb, K.6
Nelsen, M.P.7
-
78
-
-
79955805163
-
Recent origin, active speciation and dispersal for the lichen genus Nephroma (Peltigerales) in Macaronesia
-
Sérusiaux, E., J. C. Villarreal, T. Wheeler, and B. Goffinet. 2011. Recent origin, active speciation and dispersal for the lichen genus Nephroma (Peltigerales) in Macaronesia. Journal of Biogeography 38: 1138-1151.
-
(2011)
Journal of Biogeography
, vol.38
, pp. 1138-1151
-
-
Sérusiaux, E.1
Villarreal, J.C.2
Wheeler, T.3
Goffinet, B.4
-
79
-
-
0032766857
-
Multiple comparisons of loglikelihoods with applications to phylogenetic inference
-
Shimodaira, H., and M. Hasegawa. 1999. Multiple comparisons of loglikelihoods with applications to phylogenetic inference. Molecular Biology and Evolution 16: 1114-1116.
-
(1999)
Molecular Biology and Evolution
, vol.16
, pp. 1114-1116
-
-
Shimodaira, H.1
Hasegawa, M.2
-
80
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis, A. 2006. RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
81
-
-
50249100595
-
A rapid bootstrap algorithm for the RAxML web servers
-
Stamatakis, A., P. Hoover, and J. Rougemont. 2008. A rapid bootstrap algorithm for the RAxML web servers. Systematic Biology 57: 758-771.
-
(2008)
Systematic Biology
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
82
-
-
15744380228
-
New DNA data from a transthyretin nuclear intron suggest an Oligocene to Miocene diversification of living South America opossums (Marsupialia, Didelphidae)
-
Steiner, C., M. Tilak, E. J. P. Douzery, and F. M. Catzeflis. 2005. New DNA data from a transthyretin nuclear intron suggest an Oligocene to Miocene diversification of living South America opossums (Marsupialia, Didelphidae). Molecular Phylogenetics and Evolution 35: 363-379.
-
(2005)
Molecular Phylogenetics and Evolution
, vol.35
, pp. 363-379
-
-
Steiner, C.1
Tilak, M.2
Douzery, E.J.P.3
Catzeflis, F.M.4
-
83
-
-
41049111540
-
Inferring confidence sets of possibly misspecified gene trees
-
Strimmer, K., and A. Rambaut. 2002. Inferring confidence sets of possibly misspecified gene trees. Proceedings of the Royal Society of London, B, Biological Sciences 269: 137-142.
-
(2002)
Proceedings of the Royal Society of London, B, Biological Sciences
, vol.269
, pp. 137-142
-
-
Strimmer, K.1
Rambaut, A.2
-
84
-
-
77951785390
-
A new lichen, Melanohalea subexasperata (Parmeliaceae), from the Tibetan Plateau
-
Sun, L. Y., F. G. Meng, H. M. Li, H. Y. Wang, and Z. T. Zhao. 2010. A new lichen, Melanohalea subexasperata (Parmeliaceae), from the Tibetan Plateau. Mycotaxon 111: 65-69.
-
(2010)
Mycotaxon
, vol.111
, pp. 65-69
-
-
Sun, L.Y.1
Meng, F.G.2
Li, H.M.3
Wang, H.Y.4
Zhao, Z.T.5
-
85
-
-
32344432948
-
The explosive diversification of the diatom genus Chaetoceros across the Eocene/Oligocene and Oligocene/Miocene boundaries in the Norwegian Sea
-
Suto, I. 2006. The explosive diversification of the diatom genus Chaetoceros across the Eocene/Oligocene and Oligocene/Miocene boundaries in the Norwegian Sea. Marine Micropaleontology 58: 259-269.
-
(2006)
Marine Micropaleontology
, vol.58
, pp. 259-269
-
-
Suto, I.1
-
86
-
-
0003474197
-
-
Sinauer, Sunderland, Massachusetts, USA
-
Swofford, D. L. 2003. PAUP*: Phylogenetic analysis using parsimony (*and other methods), version 4.0b10.0. Sinauer, Sunderland, Massachusetts, USA.
-
(2003)
PAUP*: Phylogenetic analysis using parsimony (*and other methods), version 4.0b10.0
-
-
Swofford, D.L.1
-
87
-
-
34547489084
-
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
-
Talavera, G., and J. Castresana. 2007. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Systematic Biology 56: 564-577.
-
(2007)
Systematic Biology
, vol.56
, pp. 564-577
-
-
Talavera, G.1
Castresana, J.2
-
88
-
-
34247601439
-
Dating divergences in the Fungal Tree of Life: Review and new analyses
-
Taylor, J. W., and M. L. Berbee. 2006. Dating divergences in the Fungal Tree of Life: Review and new analyses. Mycologia 98: 838-849.
-
(2006)
Mycologia
, vol.98
, pp. 838-849
-
-
Taylor, J.W.1
Berbee, M.L.2
-
89
-
-
70349304334
-
Phylogeny of the cetrarioid core Parmeliaceae based on five genetic markers
-
Thell, A., F. Högnabba, J. A. Elix, T. Feuerer, I. Kärnefelt, L. Myllys, T. Randlane, A. Saag, S. Stenroos, and T. Ahti. 2009. Phylogeny of the cetrarioid core Parmeliaceae based on five genetic markers. Lichenologist 41: 489-511.
-
(2009)
Lichenologist
, vol.41
, pp. 489-511
-
-
Thell, A.1
Högnabba, F.2
Elix, J.A.3
Feuerer, T.4
Kärnefelt, I.5
Myllys, L.6
Randlane, T.7
Saag, A.8
Stenroos, S.9
Ahti, T.10
-
90
-
-
0001050486
-
Seed size, dispersal syndromes, and the rise of the angiosperms: Evidence and hypothesis
-
Tiffney, B. H. 1984. Seed size, dispersal syndromes, and the rise of the angiosperms: Evidence and hypothesis. Annals of the Missouri Botanical Garden 71: 551-557.
-
(1984)
Annals of the Missouri Botanical Garden
, vol.71
, pp. 551-557
-
-
Tiffney, B.H.1
-
91
-
-
0027385308
-
Turnover-pulses, the Red Queen and related topics
-
Vrba, E. S. 1993. Turnover-pulses, the Red Queen and related topics. American Journal of Science 293: 418-452.
-
(1993)
American Journal of Science
, vol.293
, pp. 418-452
-
-
Vrba, E.S.1
-
92
-
-
17344375998
-
A multi-gene study of the phylogenetic relationships of the Parmeliaceae
-
Wedin, M., H. Döring, and J.-E. Mattsson. 1999. A multi-gene study of the phylogenetic relationships of the Parmeliaceae. Mycological Research 103: 1185-1192.
-
(1999)
Mycological Research
, vol.103
, pp. 1185-1192
-
-
Wedin, M.1
Döring, H.2
Mattsson, J.-E.3
-
94
-
-
33846062023
-
Database resources of the National Center for Biotechnology Information
-
Wheeler, D. L., T. Barrett, D. A. Benson, S. H. Bryant, K. Canese, V. Chetvernin, D. M. Church, et al. 2007. Database resources of the National Center for Biotechnology Information. Nucleic Acids Research 35 (supplement 1): D5-D12.
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Wheeler, D.L.1
Barrett, T.2
Benson, D.A.3
Bryant, S.H.4
Canese, K.5
Chetvernin, V.6
Church, D.M.7
-
95
-
-
0032226105
-
Combining data sets with different phylogenetic histories
-
Wiens, J. J. 1998. Combining data sets with different phylogenetic histories. Systematic Biology 47: 568-581.
-
(1998)
Systematic Biology
, vol.47
, pp. 568-581
-
-
Wiens, J.J.1
-
96
-
-
47349119584
-
Did tectonic activity stimulate Oligocene-Miocene speciation in the Indo-West pacific?
-
Williams, S. T., and T. F. Duda. 2008. Did tectonic activity stimulate Oligocene-Miocene speciation in the Indo-West pacific? Evolution 62: 1618-1634.
-
(2008)
Evolution
, vol.62
, pp. 1618-1634
-
-
Williams, S.T.1
Duda, T.F.2
-
97
-
-
38349105013
-
An early Cenozoic perspective on greenhouse warming and carbon-cycle dynamics
-
Zachos, J. C., G. R. Dickens, and R. E. Zeebe. 2008. An early Cenozoic perspective on greenhouse warming and carbon-cycle dynamics. Nature 451: 279-283.
-
(2008)
Nature
, vol.451
, pp. 279-283
-
-
Zachos, J.C.1
Dickens, G.R.2
Zeebe, R.E.3
-
98
-
-
0035957736
-
Trends, rhythms, and aberrations in global climate 65 Ma to present
-
Zachos, J. C., M. Pagani, L. Sloan, E. Thomas, and K. Billups. 2001a. Trends, rhythms, and aberrations in global climate 65 Ma to present. Science 292: 686-693.
-
(2001)
Science
, vol.292
, pp. 686-693
-
-
Zachos, J.C.1
Pagani, M.2
Sloan, L.3
Thomas, E.4
Billups, K.5
-
99
-
-
0035853518
-
Climate Response to orbital forcing across the Oligocene-Miocene boundary
-
Zachos, J. C., N. J. Shackleton, J. S. Revenaugh, H. Palike, and B. P. Flower. 2001b. Climate Response to orbital forcing across the Oligocene-Miocene boundary. Science 292: 274-278.
-
(2001)
Science
, vol.292
, pp. 274-278
-
-
Zachos, J.C.1
Shackleton, N.J.2
Revenaugh, J.S.3
Palike, H.4
Flower, B.P.5
-
100
-
-
68149125136
-
A new species of Melanohalea (Parmeliaceae) from the Tibetan Plateau
-
Zhao, Z.-T., F.-G. Meng, H.-M. Li, and H.-Y. Wang. 2009. A new species of Melanohalea (Parmeliaceae) from the Tibetan Plateau. Mycotaxon 108: 347-352.
-
(2009)
Mycotaxon
, vol.108
, pp. 347-352
-
-
Zhao, Z.-T.1
Meng, F.-G.2
Li, H.-M.3
Wang, H.-Y.4
-
101
-
-
33750387249
-
-
Ph.D. dissertation, University of Texas at Austin, Austin, Texas, USA
-
Zwickl, D. J. 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation, University of Texas at Austin, Austin, Texas, USA.
-
(2006)
Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion
-
-
Zwickl, D.J.1
|