-
1
-
-
48249088137
-
Dynamics of immune escape during HIV/SIV infection
-
10.1371/journal.pcbi.1000103 1553-7358 e1000103
-
Althaus C L and De Boer R J 2008 Dynamics of immune escape during HIV/SIV infection PLoS Comput. Biol. 4 e1000103
-
(2008)
PLoS Comput. Biol.
, vol.4
, Issue.7
-
-
Althaus, C.L.1
De Boer, R.J.2
-
2
-
-
0033555421
-
Diminishing returns from mutation supply rate in asexual populations
-
10.1126/science.283.5400.404 0036-8075
-
Arjan J A, Visser M, Zeyl C W, Gerrish P J, Blanchard J L and Lenski R E 1999 Diminishing returns from mutation supply rate in asexual populations Science 283 404
-
(1999)
Science
, vol.283
, Issue.5400
, pp. 404
-
-
Arjan, J.A.1
Visser, M.2
Zeyl, C.W.3
Gerrish, P.J.4
Blanchard, J.L.5
Lenski, R.E.6
-
3
-
-
79955043851
-
Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection
-
10.1073/pnas.1102036108 0027-8424
-
Batorsky R, Kearney M F, Palmer S E, Maldarelli F, Rouzine I M and Coffin J M 2011 Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection Proc. Nat. Acad. Sci. USA 108 5661
-
(2011)
Proc. Nat. Acad. Sci. USA
, vol.108
, Issue.14
, pp. 5661
-
-
Batorsky, R.1
Kearney, M.F.2
Palmer, S.E.3
Maldarelli, F.4
Rouzine, I.M.5
Coffin, J.M.6
-
4
-
-
9444282038
-
Evidence for positive epistasis in HIV-1
-
10.1126/science.1101786 0036-8075
-
Bonhoeffer S, Chappey C, Parkin N T, Whitcomb J M and Petropoulos C J 2004 Evidence for positive epistasis in HIV-1 Science 306 1547
-
(2004)
Science
, vol.306
, Issue.5701
, pp. 1547
-
-
Bonhoeffer, S.1
Chappey, C.2
Parkin, N.T.3
Whitcomb, J.M.4
Petropoulos, C.J.5
-
5
-
-
16944365445
-
Antiviral pressure exerted by HIV-1-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus
-
10.1038/nm0297-205 1078-8956
-
Borrow P et al 1997 Antiviral pressure exerted by HIV-1-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus Nature Med. 3 205
-
(1997)
Nature Med.
, vol.3
, Issue.2
, pp. 205
-
-
Borrow, P.1
-
6
-
-
52049126703
-
The stochastic edge in adaptive evolution
-
10.1534/genetics.107.079319 0016-6731
-
Brunet E, Rouzine I M and Wilke C O 2008 The stochastic edge in adaptive evolution Genetics 179 603
-
(2008)
Genetics
, vol.179
, Issue.1
, pp. 603
-
-
Brunet, E.1
Rouzine, I.M.2
Wilke, C.O.3
-
7
-
-
0028952146
-
HIV population dynamics in vivo: Implications for genetic variation, pathogenesis, and therapy
-
10.1126/science.7824947 0036-8075
-
Coffin J M 1995 HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy Science 267 483
-
(1995)
Science
, vol.267
, Issue.5197
, pp. 483
-
-
Coffin, J.M.1
-
9
-
-
33847314378
-
Beneficial mutation selection balance and the effect of linkage on positive selection
-
10.1534/genetics.106.067678 0016-6731
-
Desai M M and Fisher D S 2007 Beneficial mutation selection balance and the effect of linkage on positive selection Genetics 176 1759
-
(2007)
Genetics
, vol.176
, Issue.3
, pp. 1759
-
-
Desai, M.M.1
Fisher, D.S.2
-
10
-
-
0016110957
-
The evolutionary advantage of recombination [review]
-
Felsenstein J 1974 The evolutionary advantage of recombination [review] Genetics 78 737
-
(1974)
Genetics
, vol.78
, pp. 737
-
-
Felsenstein, J.1
-
11
-
-
0032953920
-
Latent infection of CD4+ T cells provides a mechanism for lifelong persistence of HIV-1, even in patients on effective combination therapy
-
10.1038/8394 1078-8956
-
Finzi D et al 1999 Latent infection of CD4+ T cells provides a mechanism for lifelong persistence of HIV-1, even in patients on effective combination therapy Nature Med. 5 512
-
(1999)
Nature Med.
, vol.5
, Issue.5
, pp. 512
-
-
Finzi, D.1
-
12
-
-
77957901912
-
Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing
-
10.1371/journal.pone.0012303 1932-6203 e12303
-
Fischer W et al 2010 Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing PLoS One 5 e12303
-
(2010)
PLoS One
, vol.5
, Issue.8
-
-
Fischer, W.1
-
14
-
-
61849168524
-
Clonal interference, multiple mutations and adaptation in large asexual populations
-
10.1534/genetics.108.090019 0016-6731
-
Fogle C A, Nagle J L and Desai M M 2008 Clonal interference, multiple mutations and adaptation in large asexual populations Genetics 180 2163
-
(2008)
Genetics
, vol.180
, Issue.4
, pp. 2163
-
-
Fogle, C.A.1
Nagle, J.L.2
Desai, M.M.3
-
15
-
-
0033946764
-
Evolution of lamivudine resistance in human immunodeficiency virus type 1-infected individuals: The relative roles of drift and selection
-
10.1128/JVI.74.14.6262-6268.2000 0022-538X
-
Frost S D, Nijhuis M, Schuurman R, Boucher C A and Brown A J 2000 Evolution of lamivudine resistance in human immunodeficiency virus type 1-infected individuals: the relative roles of drift and selection J. Virol. 74 6262
-
(2000)
J. Virol.
, vol.74
, Issue.14
, pp. 6262
-
-
Frost, S.D.1
Nijhuis, M.2
Schuurman, R.3
Boucher, C.A.4
Brown, A.J.5
-
16
-
-
2542583245
-
The fate of competing beneficial mutations in an asexual population
-
10.1023/A:1017067816551 0016-6707
-
Gerrish P J and Lenski R E 1998 The fate of competing beneficial mutations in an asexual population Genetica 102/103 127
-
(1998)
Genetica
, vol.102-103
, pp. 127
-
-
Gerrish, P.J.1
Lenski, R.E.2
-
17
-
-
33846847823
-
Increasing sequence correlation limits the efficiency of recombination in a multisite evolution model
-
10.1093/molbev/msl189 0737-4038
-
Gheorghiu-Svirschevski S, Rouzine I M and Coffin J M 2007 Increasing sequence correlation limits the efficiency of recombination in a multisite evolution model Mol. Biol. Evol. 24 574
-
(2007)
Mol. Biol. Evol.
, vol.24
, Issue.2
, pp. 574
-
-
Gheorghiu-Svirschevski, S.1
Rouzine, I.M.2
Coffin, J.M.3
-
18
-
-
84858389346
-
Outwitting evolution: Fighting drug-resistant TB, malaria, and HIV
-
10.1016/j.cell.2012.02.021 0092-8674
-
Goldberg D E, Siliciano R F and Jacobs W R Jr 2012 Outwitting evolution: fighting drug-resistant TB, malaria, and HIV Cell 148 1271
-
(2012)
Cell
, vol.148
, Issue.6
, pp. 1271
-
-
Goldberg, D.E.1
Siliciano, R.F.2
Jacobs Jr., W.R.3
-
19
-
-
84859448396
-
Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations
-
10.1073/pnas.1119910109 0027-8424
-
Good B H, Rouzine I M, Balick D J, Hallatschek O and Desai M M 2012 Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations Proc. Nat. Acad. Sci. USA 109 4950
-
(2012)
Proc. Nat. Acad. Sci. USA
, vol.109
, Issue.13
, pp. 4950
-
-
Good, B.H.1
Rouzine, I.M.2
Balick, D.J.3
Hallatschek, O.4
Desai, M.M.5
-
20
-
-
67449147145
-
The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection
-
10.1084/jem.20090365 0022-1007
-
Goonetilleke N et al 2009 The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection J. Exp. Med. 206 1253
-
(2009)
J. Exp. Med.
, vol.206
, Issue.6
, pp. 1253
-
-
Goonetilleke, N.1
-
21
-
-
84865074474
-
Dynamic mutation-selection balance as an evolutionary attractor
-
10.1534/genetics.112.141291 0016-6731
-
Goyal S, Balick D J, Jerison E R, Neher R A, Shraiman B I and Desai M M 2012 Dynamic mutation-selection balance as an evolutionary attractor Genetics 191 1309
-
(2012)
Genetics
, vol.191
, Issue.4
, pp. 1309
-
-
Goyal, S.1
Balick, D.J.2
Jerison, E.R.3
Neher, R.A.4
Shraiman, B.I.5
Desai, M.M.6
-
22
-
-
10544241554
-
Quantitative image analysis of HIV-1 infection in lymphoid tissue
-
10.1126/science.274.5289.985 0036-8075
-
Haase A T et al 1996 Quantitative image analysis of HIV-1 infection in lymphoid tissue Science 274 985
-
(1996)
Science
, vol.274
, Issue.5289
, pp. 985
-
-
Haase, A.T.1
-
23
-
-
0032971372
-
Population biology of HIV-1 infection: Viral and CD4 + T cell demographics and dynamics in lymphatic tissues
-
10.1146/annurev.immunol.17.1.625 0732-0582
-
Haase A T 1999 Population biology of HIV-1 infection: viral and CD4 + T cell demographics and dynamics in lymphatic tissues Annu. Rev. Immunol. 17 625
-
(1999)
Annu. Rev. Immunol.
, vol.17
, Issue.1
, pp. 625
-
-
Haase, A.T.1
-
24
-
-
79952179424
-
The noisy edge of traveling waves
-
10.1073/pnas.1013529108 0027-8424
-
Hallatschek O 2010 The noisy edge of traveling waves Proc. Nat. Acad. Sci. USA 108 1783
-
(2010)
Proc. Nat. Acad. Sci. USA
, vol.108
, Issue.5
, pp. 1783
-
-
Hallatschek, O.1
-
25
-
-
33645076253
-
An equivalence principle for the incorporation of favorable mutations in asexual populations
-
10.1126/science.1122469 0036-8075
-
Hegreness M, Shoresh N, Hartl D and Kishony R 2006 An equivalence principle for the incorporation of favorable mutations in asexual populations Science 311 1615
-
(2006)
Science
, vol.311
, Issue.5767
, pp. 1615
-
-
Hegreness, M.1
Shoresh, N.2
Hartl, D.3
Kishony, R.4
-
26
-
-
0013979181
-
The effect of linkage on limits to artificial selection
-
10.1017/S0016672300010156 0016-6723
-
Hill W G and Robertson A 1966 The effect of linkage on limits to artificial selection Genet. Res. 8 269
-
(1966)
Genet. Res.
, vol.8
, Issue.3
, pp. 269
-
-
Hill, W.G.1
Robertson, A.2
-
27
-
-
0028874048
-
Rapid turnover of plasma virions and CD4 lymphocytes in HIV infection
-
10.1038/373123a0 0028-0836
-
Ho D D, Neumann A U, Perelson A S, Chen W, Leonard J M and Markowitz M 1995 Rapid turnover of plasma virions and CD4 lymphocytes in HIV infection Nature 373 123
-
(1995)
Nature
, vol.373
, Issue.6510
, pp. 123
-
-
Ho, D.D.1
Neumann, A.U.2
Perelson, A.S.3
Chen, W.4
Leonard, J.M.5
Markowitz, M.6
-
29
-
-
0014961824
-
Defective viral particles and viral disease processes
-
10.1038/226325a0 0028-0836
-
Huang A S and Baltimore D 1970 Defective viral particles and viral disease processes Nature 226 325
-
(1970)
Nature
, vol.226
, Issue.5243
, pp. 325
-
-
Huang, A.S.1
Baltimore, D.2
-
30
-
-
0035970061
-
Fitness effects of advantageous mutations in evolving Escherichia coli populations
-
10.1073/pnas.98.3.1113 0027-8424
-
Imhof M and Schlotterer C 2001 Fitness effects of advantageous mutations in evolving Escherichia coli populations Proc. Nat. Acad. Sci. USA 98 1113
-
(2001)
Proc. Nat. Acad. Sci. USA
, vol.98
, Issue.3
, pp. 1113
-
-
Imhof, M.1
Schlotterer, C.2
-
31
-
-
84857955750
-
A quantitative basis for antiretroviral therapy for HIV-1 infection
-
10.1038/nm.2649 1078-8956
-
Jilek B L, Zarr M, Sampah M E, Rabi S A, Bullen C K, Lai J, Shen L and Siliciano R F 2012 A quantitative basis for antiretroviral therapy for HIV-1 infection Nature Med. 18 446
-
(2012)
Nature Med.
, vol.18
, Issue.3
, pp. 446
-
-
Jilek, B.L.1
Zarr, M.2
Sampah, M.E.3
Rabi, S.A.4
Bullen, C.K.5
Lai, J.6
Shen, L.7
Siliciano, R.F.8
-
32
-
-
0033559648
-
Dramatic rise in plasma viremia after CD8(+) T cell depletion in simian immunodeficiency virus-infected macaques
-
10.1084/jem.189.6.991 0022-1007
-
Jin X et al 1999 Dramatic rise in plasma viremia after CD8(+) T cell depletion in simian immunodeficiency virus-infected macaques J. Exp. Med. 189 991
-
(1999)
J. Exp. Med.
, vol.189
, Issue.6
, pp. 991
-
-
Jin, X.1
-
33
-
-
62749173126
-
Human immunodeficiency virus type 1 population genetics and adaptation in newly infected individuals
-
10.1128/JVI.01960-08 0022-538X
-
Kearney M, Maldarelli F, Shao W, Margolick J B, Daar E S, Mellors J W, Rao V, Coffin J M and Palmer S 2009 Human immunodeficiency virus type 1 population genetics and adaptation in newly infected individuals J. Virol. 83 2715
-
(2009)
J. Virol.
, vol.83
, Issue.6
, pp. 2715
-
-
Kearney, M.1
Maldarelli, F.2
Shao, W.3
Margolick, J.B.4
Daar, E.S.5
Mellors, J.W.6
Rao, V.7
Coffin, J.M.8
Palmer, S.9
-
34
-
-
44649102135
-
Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection
-
10.1073/pnas.0802203105 0027-8424
-
Keele B F et al 2008 Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection Proc. Nat. Acad. Sci. USA 105 7552
-
(2008)
Proc. Nat. Acad. Sci. USA
, vol.105
, Issue.21
, pp. 7552
-
-
Keele, B.F.1
-
37
-
-
84859448471
-
Chance and risk in adaptive evolution
-
10.1073/pnas.1203012109 0027-8424
-
Lassig M 2012 Chance and risk in adaptive evolution Proc. Nat. Acad. Sci. USA 109 4719
-
(2012)
Proc. Nat. Acad. Sci. USA
, vol.109
, Issue.13
, pp. 4719
-
-
Lassig, M.1
-
38
-
-
9044230526
-
In vivo sequence diversity of the protease of human immunodeficiency virus type 1: Presence of protease inhibitor-resistant variants in untreated subjects
-
Lech W J et al 1996 In vivo sequence diversity of the protease of human immunodeficiency virus type 1: presence of protease inhibitor-resistant variants in untreated subjects J. Virol. 70 2038
-
(1996)
J. Virol.
, vol.70
, pp. 2038
-
-
Lech, W.J.1
-
39
-
-
0004732896
-
Analysis of HIV-1 env gene sequences reveals evidence for a low effective number in the viral population
-
10.1073/pnas.94.5.1862 0027-8424
-
Leigh-Brown A J 1997 Analysis of HIV-1 env gene sequences reveals evidence for a low effective number in the viral population Proc. Nat. Acad. Sci. USA 94 1862
-
(1997)
Proc. Nat. Acad. Sci. USA
, vol.94
, Issue.5
, pp. 1862
-
-
Leigh-Brown, A.J.1
-
41
-
-
79251616079
-
Dynamics of viral evolution and CTL responses in HIV-1 infection
-
10.1371/journal.pone.0015639 1932-6203 e15639
-
Liu Y, McNevin J P, Holte S, McElrath M J and Mullins J I 2011 Dynamics of viral evolution and CTL responses in HIV-1 infection PLoS One 6 e15639
-
(2011)
PLoS One
, vol.6
, Issue.1
-
-
Liu, Y.1
McNevin, J.P.2
Holte, S.3
McElrath, M.J.4
Mullins, J.I.5
-
42
-
-
77951980565
-
Mathematical modeling of ultradeep sequencing data reveals that acute CD8+ T-lymphocyte responses exert strong selective pressure in simian immunodeficiency virus-infected macaques but still fail to clear founder epitope sequences
-
10.1128/JVI.00117-10 0022-538X
-
Love T M, Thurston S W, Keefer M C, Dewhurst S and Lee H Y 2010 Mathematical modeling of ultradeep sequencing data reveals that acute CD8+ T-lymphocyte responses exert strong selective pressure in simian immunodeficiency virus-infected macaques but still fail to clear founder epitope sequences J. Virol. 84 5802
-
(2010)
J. Virol.
, vol.84
, Issue.11
, pp. 5802
-
-
Love, T.M.1
Thurston, S.W.2
Keefer, M.C.3
Dewhurst, S.4
Lee, H.Y.5
-
43
-
-
0015010870
-
What use is sex?
-
10.1016/0022-5193(71)90058-0 0022-5193
-
Maynard Smith J M 1971 What use is sex? J. Theor. Biol. 30 319
-
(1971)
J. Theor. Biol.
, vol.30
, Issue.2
, pp. 319
-
-
Maynard Smith, J.M.1
-
44
-
-
79953671625
-
Autonomous targeting of infectious superspreaders using engineered transmissible therapies
-
10.1371/journal.pcbi.1002015 1553-7358 e1002015
-
Metzger V T, Lloyd-Smith J O and Weinberger L S 2011 Autonomous targeting of infectious superspreaders using engineered transmissible therapies PLoS Comput. Biol. 7 e1002015
-
(2011)
PLoS Comput. Biol.
, vol.7
, Issue.3
-
-
Metzger, V.T.1
Lloyd-Smith, J.O.2
Weinberger, L.S.3
-
45
-
-
0001224667
-
Some genetic aspects of sex
-
10.1086/280418 0003-0147
-
Muller H J 1932 Some genetic aspects of sex Am. Nat. 66 118
-
(1932)
Am. Nat.
, vol.66
, Issue.703
, pp. 118
-
-
Muller, H.J.1
-
46
-
-
61349112079
-
From fitness landscapes to seascapes: Non-equilibrium dynamics of selection and adaptation
-
10.1016/j.tig.2009.01.002 0168-9525
-
Mustonen V and Lassig M 2009 From fitness landscapes to seascapes: non-equilibrium dynamics of selection and adaptation Trends. Genet. 25 111
-
(2009)
Trends. Genet.
, vol.25
, Issue.3
, pp. 111
-
-
Mustonen, V.1
Lassig, M.2
-
47
-
-
77749254888
-
Fitness flux and ubiquity of adaptive evolution
-
10.1073/pnas.0907953107 0027-8424
-
Mustonen V and Lassig M 2010 Fitness flux and ubiquity of adaptive evolution Proc. Nat. Acad. Sci. USA 107 4248
-
(2010)
Proc. Nat. Acad. Sci. USA
, vol.107
, Issue.9
, pp. 4248
-
-
Mustonen, V.1
Lassig, M.2
-
48
-
-
76749139978
-
Recombination rate and selection strength in HIV intra-patient evolution
-
10.1371/journal.pcbi.1000660 1553-7358 e1000660
-
Neher R A and Leitner T 2010 Recombination rate and selection strength in HIV intra-patient evolution PLoS Comput. Biol. 6 e1000660
-
(2010)
PLoS Comput. Biol.
, vol.6
, Issue.1
-
-
Neher, R.A.1
Leitner, T.2
-
49
-
-
77749268358
-
Rate of adaptation in large sexual populations
-
10.1534/genetics.109.109009 0016-6731
-
Neher R A, Shraiman B I and Fisher D S 2010 Rate of adaptation in large sexual populations Genetics 184 467
-
(2010)
Genetics
, vol.184
, Issue.2
, pp. 467
-
-
Neher, R.A.1
Shraiman, B.I.2
Fisher, D.S.3
-
50
-
-
80051478113
-
Genetic draft and quasi-neutrality in large facultatively sexual populations
-
10.1534/genetics.111.128876 0016-6731
-
Neher R A and Shraiman B I 2011 Genetic draft and quasi-neutrality in large facultatively sexual populations Genetics 188 975
-
(2011)
Genetics
, vol.188
, Issue.4
, pp. 975
-
-
Neher, R.A.1
Shraiman, B.I.2
-
51
-
-
0030871021
-
The evolution of recombination: Removing the limits to natural selection
-
Otto S and Barton N 1997 The evolution of recombination: removing the limits to natural selection Genetics 147 879
-
(1997)
Genetics
, vol.147
, pp. 879
-
-
Otto, S.1
Barton, N.2
-
52
-
-
33646592536
-
Soft sweeps II-molecular population genetics of adaptation from recurrent mutation or migration
-
10.1093/molbev/msj117 0737-4038
-
Pennings P S and Hermisson J 2006 Soft sweeps II-molecular population genetics of adaptation from recurrent mutation or migration Mol. Biol. Evol. 23 1076
-
(2006)
Mol. Biol. Evol.
, vol.23
, Issue.5
, pp. 1076
-
-
Pennings, P.S.1
Hermisson, J.2
-
53
-
-
33845971545
-
Soft sweeps III: The signature of positive selection from recurrent mutation
-
10.1371/journal.pgen.0020186 1553-7390
-
Pennings P S and Hermisson J 2006 Soft sweeps III: the signature of positive selection from recurrent mutation PLoS Genet. 2 e186
-
(2006)
PLoS Genet.
, vol.2
, Issue.12
, pp. 186
-
-
Pennings, P.S.1
Hermisson, J.2
-
54
-
-
0036207383
-
Experimental tests of the adaptive significance of sexual recombination
-
10.1038/nrg760 1471-0056
-
Rice W R 2002 Experimental tests of the adaptive significance of sexual recombination Nature Rev. Genet. 3 241
-
(2002)
Nature Rev. Genet.
, vol.3
, Issue.4
, pp. 241
-
-
Rice, W.R.1
-
56
-
-
0032849062
-
Search for the mechanism of genetic variation in the pro gene of human immunodeficiency virus
-
Rouzine I M and Coffin J M 1999 Search for the mechanism of genetic variation in the pro gene of human immunodeficiency virus J. Virol. 73 8167
-
(1999)
J. Virol.
, vol.73
, pp. 8167
-
-
Rouzine, I.M.1
Coffin, J.M.2
-
57
-
-
0032824180
-
Linkage disequilibrium test implies a large effective population number for HIV in vivo
-
10.1073/pnas.96.19.10758 0027-8424
-
Rouzine I M and Coffin J M 1999 Linkage disequilibrium test implies a large effective population number for HIV in vivo Proc. Nat. Acad. Sci. USA 96 10758
-
(1999)
Proc. Nat. Acad. Sci. USA
, vol.96
, Issue.19
, pp. 10758
-
-
Rouzine, I.M.1
Coffin, J.M.2
-
58
-
-
0035102156
-
Transition between stochastic evolution and deterministic evolution in the presence of selection: General theory and application to virology [review]
-
10.1128/MMBR.65.1.151-185.2001 1092-2172
-
Rouzine I M, Rodrigo A and Coffin J M 2001 Transition between stochastic evolution and deterministic evolution in the presence of selection: general theory and application to virology [review] Microbiol. Mol. Biol. Rev. 65 151
-
(2001)
Microbiol. Mol. Biol. Rev.
, vol.65
, Issue.1
, pp. 151
-
-
Rouzine, I.M.1
Rodrigo, A.2
Coffin, J.M.3
-
59
-
-
20444366581
-
Evolution of human immunodeficiency virus under selection and weak recombination
-
10.1534/genetics.104.029926 0016-6731
-
Rouzine I M and Coffin J M 2005 Evolution of human immunodeficiency virus under selection and weak recombination Genetics 170 7
-
(2005)
Genetics
, vol.170
, Issue.1
, pp. 7
-
-
Rouzine, I.M.1
Coffin, J.M.2
-
60
-
-
33846577763
-
Highly fit ancestors of a partly sexual haploid population
-
10.1016/j.tpb.2006.09.002 0040-5809
-
Rouzine I M and Coffin J M 2007 Highly fit ancestors of a partly sexual haploid population Theor. Popul. Biol. 71 239
-
(2007)
Theor. Popul. Biol.
, vol.71
, Issue.2
, pp. 239
-
-
Rouzine, I.M.1
Coffin, J.M.2
-
61
-
-
37848998555
-
The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptation
-
10.1016/j.tpb.2007.10.004 0040-5809
-
Rouzine I M, Brunet E and Wilke C O 2008 The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptation Theor. Popul. Biol. 73 24
-
(2008)
Theor. Popul. Biol.
, vol.73
, Issue.1
, pp. 24
-
-
Rouzine, I.M.1
Brunet, E.2
Wilke, C.O.3
-
62
-
-
77950050828
-
Multi-site adaptation in the presence of infrequent recombination
-
10.1016/j.tpb.2010.02.001 0040-5809
-
Rouzine I M and Coffin J M 2010 Multi-site adaptation in the presence of infrequent recombination Theor. Popul. Biol. 77 189
-
(2010)
Theor. Popul. Biol.
, vol.77
, Issue.3
, pp. 189
-
-
Rouzine, I.M.1
Coffin, J.M.2
-
63
-
-
66049139947
-
Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection
-
10.1084/jem.20090378 0022-1007
-
Salazar-Gonzalez J F et al 2009 Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection J. Exp. Med. 206 1273
-
(2009)
J. Exp. Med.
, vol.206
, Issue.6
, pp. 1273
-
-
Salazar-Gonzalez, J.F.1
-
64
-
-
83455243204
-
Emergent neutrality in adaptive asexual evolution
-
10.1534/genetics.111.132027 0016-6731
-
Schiffels S, Szollosi G J, Mustonen V and Lassig M 2011 Emergent neutrality in adaptive asexual evolution Genetics 189 1361
-
(2011)
Genetics
, vol.189
, Issue.4
, pp. 1361
-
-
Schiffels, S.1
Szollosi, G.J.2
Mustonen, V.3
Lassig, M.4
-
65
-
-
0033524838
-
Control of viremia in simian immunodeficiency virus infection by CD8+ lymphocytes
-
10.1126/science.283.5403.857 0036-8075
-
Schmitz J E et al 1999 Control of viremia in simian immunodeficiency virus infection by CD8+ lymphocytes Science 283 857
-
(1999)
Science
, vol.283
, Issue.5403
, pp. 857
-
-
Schmitz, J.E.1
-
66
-
-
84863337769
-
Stimulation of HIV-1-specific cytolytic T lymphocytes facilitates elimination of latent viral reservoir after virus reactivation
-
10.1016/j.immuni.2012.01.014 1074-7613
-
Shan L et al 2012 Stimulation of HIV-1-specific cytolytic T lymphocytes facilitates elimination of latent viral reservoir after virus reactivation Immunity 36 491
-
(2012)
Immunity
, vol.36
, Issue.3
, pp. 491
-
-
Shan, L.1
-
67
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
Tajima F 1989 Statistical method for testing the neutral mutation hypothesis by DNA polymorphism Genetics 123 585
-
(1989)
Genetics
, vol.123
, pp. 585
-
-
Tajima, F.1
-
68
-
-
0001444323
-
RNA virus evolution via a fitness-space model
-
10.1103/PhysRevLett.76.4440 0031-9007
-
Tsimring L S, Levine H and Kessler D 1996 RNA virus evolution via a fitness-space model Phys. Rev. Lett. 76 4440
-
(1996)
Phys. Rev. Lett.
, vol.76
, Issue.23
, pp. 4440
-
-
Tsimring, L.S.1
Levine, H.2
Kessler, D.3
-
69
-
-
0028811974
-
Viral dynamics in human immunodeficiency virus type 1 infection
-
10.1038/373117a0 0028-0836
-
Wei X et al 1995 Viral dynamics in human immunodeficiency virus type 1 infection Nature 373 117
-
(1995)
Nature
, vol.373
, Issue.6510
, pp. 117
-
-
Wei, X.1
-
70
-
-
0141570489
-
Theoretical design of a gene therapy to prevent AIDS but not human immunodeficiency virus type 1 infection
-
10.1128/JVI.77.18.10028-10036.2003 0022-538X
-
Weinberger L S, Schaffer D V and Arkin A P 2003 Theoretical design of a gene therapy to prevent AIDS but not human immunodeficiency virus type 1 infection J. Virol. 77 10028
-
(2003)
J. Virol.
, vol.77
, Issue.18
, pp. 10028
-
-
Weinberger, L.S.1
Schaffer, D.V.2
Arkin, A.P.3
-
71
-
-
0001771498
-
Evolution in Mendelian populations
-
0016-6731
-
Wright S 1931 Evolution in Mendelian populations Genetics 16 97
-
(1931)
Genetics
, vol.16
, pp. 97
-
-
Wright, S.1
|