Increasing sequence correlation limits the efficiency of recombination in a multisite evolution model

Molecular Biology and Evolution

Volumn 24, Issue 2, 2007, Pages 574-586

  Gheorghiu Svirschevski, S ^a   Rouzine, I M ^a   Coffin, J M ^a  

^a TUFTS UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Correlation; Model; Numerical; Recombination; Selection; Simulation

Indexed keywords

ALLELE; ARTICLE; CORRELATION COEFFICIENT; GENE LINKAGE DISEQUILIBRIUM; GENE SEQUENCE; GENETIC RECOMBINATION; GENETIC SELECTION; HAPLOIDY; HUMAN IMMUNODEFICIENCY VIRUS; MOLECULAR EVOLUTION; MOLECULAR MODEL; MONTE CARLO METHOD; MUTATION; POPULATION DYNAMICS;

ALLELES; DRUG RESISTANCE, VIRAL; EVOLUTION, MOLECULAR; HIV; HUMANS; KINETICS; LINKAGE DISEQUILIBRIUM; MODELS, GENETIC; MONTE CARLO METHOD; RECOMBINATION, GENETIC;

EID: 33846847823     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msl189     Document Type: Article

References (27)

1. Aranson I, Tsimring L, Vinokur V. 1997. Evolution on a rugged landscape: pinning and aging. Phys Rev Lett. 79:3298.
2. Barton NH. 1995a. A general model for the evolution of recombination. Genet Res. 65:123-144.
3. Barton NH. 1995b. Linkage and the limits to natural selection. Genetics. 140:821-841.
4. Burger R. 1999. Evolution of genetic variability and the advantage of sex and recombination in changing environments. Genetics. 153:1055-1069.
5. Burt A. 2000. Perspective: sex, recombination, and the efficacy of selection - was Weismann right? Evol Int J Org Evol. 54:337-351.
6. Chun TW, Carruth L, Finzi D, et al. [15 co-authors]. 1997. Quantification of latent tissue reservoirs and total body viral load in HIV-1 infection. Nature. 387:183-188.
7. Crow JF, Kimura M. 1965. Evolution in sexual and asexual populations. Am Nat. 9:439-450.
8. Dang Q, Chen J, Unutmaz D, Coffin JM, Pathak VK, Powell D, KewalRamani VN, Maldarelli F, Hu WS. 2004. Nonrandom HIV-1 infection and double infection via direct and cell-mediated pathways. Proc Natl Acad Sci USA. 101:632-637.
9. Felsenstein J. 1974. The evolutionary advantage of recombination. Genetics. 78:737-756.
10. Fisher RA. 1930. The genetical theory of natural selection. Oxford: Oxford University Press.
11. Frost SD, Nijhuis M, Schuurman R, Boucher CA, Brown AJ. 2000. Evolution of lamivudine resistance in human immunodeficiency virus type 1-infected individuals: the relative roles of drift and selection. J Virol. 74:6262-6268.
12. Haigh J. 1978. The accumulation of deleterious genes in a population - Muller's ratchet. Theor Popul Biol. 14:251-267.
13. Hey J. 1998. Selfish genes, pleiotropy and the origin of recombination. Genetics. 149:2089-2097.
14. Hill WG, Robertson A. 1966. The effect of linkage on the limits to artificial selection. Genet Res. 8:269-294.
15. Jung A, Maier R, Vartanian JP, Bocharov G, Jung V, Fischer U, Meese E, Wain-Hobson S, Meyerhans A. 2002. Multiply infected spleen cells in HIV patients. Nature. 418:144.
16. Kessler DA, Ridgway D, Levine H, Tsimring L. 1997. Evolution on a smooth landscape. J Stat Phys. 87:519.
17. Levy DN, Aldrovandi GM, Kutsch O, Shaw GM. 2004. Dynamics of HIV-1 recombination in its natural target cells. Proc Natl Acad Sci USA. 101:4204-4209.
18. Lewontin RC. 1964. The interaction of selection and linkage. I. General considerations; heterotic models. Genetics. 49:49-67.
19. Maynard-Smith J. 1968. Evolution in sexual and asexual populations. Am Nat. 102:469-473.
20. Muller HJ. 1932. Some genetic aspects of sex. Am Nat. 66:118-138.
21. Otto SP, Lenormand T. 2002. Resolving the paradox of sex and recombination. Nat Rev Genet. 3:252-261.
22. Ridgway D, Levine H, Kessler DA. 1998. Evolution on a smooth landscape: the role of bias. J Stat Phys. 90:191.
23. Rouzine I, Wakeley J, Coffin J. 2003. The solitary wave of asexual evolution. Proc Natl Acad Sci USA. 100:587-592.
24. Rouzine IM, Coffin JM. 1999. Linkage disequilibrium test implies a large effective population number for HIV in vivo. Proc Natl Acad Sci USA. 96:10758-10763.
25. Rouzine IM, Coffin JM. 2005. Evolution of human immunodeficiency virus under selection and weak recombination. Genetics. 170:7-18.
26. Rouzine IM, Sergeev RA, Glushtsov AI. 2006. Two types of cytotoxic lymphocyte regulation explain kinetics of immune response to human immunodeficiency virus. Proc Natl Acad Sci USA. 103:666-671.
27. Tsimring LS, Levine H, Kessler DA. 1996. RNA virus evolution via a fitness-space model. Phys Rev Lett. 76:4440.