Linkage disequilibrium test implies a large effective population number for HIV in vivo

Proceedings of the National Academy of Sciences of the United States of America

Volumn 96, Issue 19, 1999, Pages 10758-10763

  Rouzine, I M ^a   Coffin, J M ^a  

^a TUFTS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CASE REPORT; GENE LINKAGE DISEQUILIBRIUM; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; MULTIDRUG RESISTANCE; NONHUMAN; POPULATION MODEL; PRIORITY JOURNAL; VIRUS GENOME; VIRUS INFECTION;

COMPUTER SIMULATION; EVOLUTION, MOLECULAR; GENE PRODUCTS, ENV; GENOME, VIRAL; HAPLOTYPES; HIV; LINKAGE DISEQUILIBRIUM; MODELS, GENETIC; MONTE CARLO METHOD; MUTATION; STOCHASTIC PROCESSES; TIME FACTORS;

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 0032824180     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.96.19.10758     Document Type: Article

References (32)

1. Leigh-Brown, A. J. (1997) Proc. Natl. Acad. Sci. USA 94, 1862-1865.
2. Kimura, M. (1994) Population Genetics, Molecular Evolution, and the Neutral Theory. Selected papers (Univ. of Chicago Press, Chicago).
3. Haase, A. T., Henry, K., Zupancic, M., Sedgewick, G., Faust, R. A., Melroe, H., Cavert, W., Gebhard, K., Staskus, K., Zhang, Z.-Q., et al. (1996) Science 274, 985-989.
4. Mansky, L. M. & Temin, H. M. (1995) J. Virol. 69, 5087-5094.
5. Fisher, R. A. (1958) The Genetical Theory of Natural Selection (Clarendon, Oxford).
6. Muller, H. J. (1932) Am. Nat. 66, 118-128.
7. Felsenstein, J. (1974) Genetics 78, 737-756.
8. Maynard Smith, J. M. (1971) J. Theor. Biol. 30, 319-335.
9. Lewontin, R. C. (1964) Genetics 49, 49-67.
10. Hill, W. G. & Robertson, A. (1968) Theor. Appl. Genet. 38, 226-231.
11. Lech, W. J., Wang, G., Yang, Y. L., Chee, Y., Dorman, K., McCrae, D., Lazzeroni, L. C., Erickson, J. W., Sinsheimer, J. S. & Kaplan, A. H. (1996) J. Virol. 70, 2038-2043.
12. Holmes, E. C., Zhang, L. Q., Simmonds, P., Ludlam, C. A. & Brown, A. J. L. (1992) Proc. Natl. Acad. Sci. USA 89, 4835-4839.
13. Felsenstein, J. (1965) Genetics 52, 349-363.
14. Rouzine, I. M. & Coffin, J. M. (1999) J. Virol. 73, in press.
15. Waterson, G. A. (1975) Theor. Popul. Biol. 7, 256-276.
16. Haldane, J. B. S. (1924) Trans. Camb. Philos. Soc. 23, 19-41.
17. Tajima, F. (1989) Genetics 123, 585-595.
18. Zhang, L. Q., MacKenzie, P., Cleland, A., Holmes, E. C., Brown, A. J. L. & Simmonds, P. (1993) J. Virol. 67, 3345-3356.
19. Delwart, E. L., Sheppard, H. W., Walker, B. D., Goudsmit, J. & Mullins, J. I. (1994) J. Virol. 68, 6672-6683.
20. Liu, S. L., Schaker, T., Musey, L., Shriner, D., McElrath, M. J., Corey, L. & Mullins, J. I. (1997) J. Virol. 71, 4284-4295.
21. Hu, W.-S. & Temin, H. M. (1990) Science 250, 1227-1233.
22. Robertson, D. L., Sharp, P. M., McCutchan, F. E. & Hahn, B. H. (1995) Nature (London) 374, 124-126.
23. Ho, D. D., Neumann, A. U., Perelson, A. S., Chen, W., Leonard, J. M. & Markowitz, M. (1995) Nature (London) 373, 123-126.
24. Mohri, H., Bonhoeffer, S., Monard, S., Perelson, A. S. & Ho, D. D. (1998) Science 279, 1223-1227.
25. Wei, X., Ghosh, S., Taylor, M. E., Johnson, V. A., Emini, E. A., Deutsch, P., Lifson, J. D., Bonhoeffer, S., Nowak, M. A., Hahn, B. H., et al. (1995) Nature (London) 373, 117-122.
26. Haase, A. T. (1998) Annu. Rev. Immun. 17, 625-656.
27. Rouzine, I. M. & Coffin, J. M. (1999) in Origin and Evolution of Viruses, eds. Domingo, E., Webster, R. & Holland, J. (Academic, London), pp. 225-262.
28. Reinhart, T. A., Rogan, M. J., Amedee, A. M., Murphey-Corb, M., Rausch, D. M., Eiden, L. E. & Haase, A. T. (1998) J. Virol. 72, 113-120.
29. Grossman, Z., Feinberg, M. B. & Paul, W. E. (1998) Proc. Natl. Acad. Sci. USA 95, 6314-6319.
30. Rodrigo, A. G. & Felsenstein, J. (1999) in Molecular Evolution of HIV, ed. Crandall, K. (Johns Hopkins Univ. Press, Baltimore), in press.
31. Neuhauser, C. & Krone, S. M. (1997) Genetics 145, 519-534.
32. Krone, S. M. & Neuhauser, C. (1997) Theor. Popul. Biol. 51, 210-237.