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Volumn 59, Issue 3, 2013, Pages 367-376

A genome-wide survey of small interfering RNA and microRNA pathway genes in a galling insect

Author keywords

Hessian fly; Mayetiola destructor; MicroRNAs; Small interfering RNAs; Systemic RNA interference

Indexed keywords

INSECT PROTEIN; MICRORNA; SMALL INTERFERING RNA;

EID: 84874475223     PISSN: 00221910     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jinsphys.2012.11.009     Document Type: Article
Times cited : (10)

References (75)
  • 1
    • 33845271891 scopus 로고    scopus 로고
    • Does R gene resistance allow wheat to prevent plant growth effects associated with Hessian fly (Diptera: Cecidomyiidae) attack
    • Anderson K.G., Harris M.O. Does R gene resistance allow wheat to prevent plant growth effects associated with Hessian fly (Diptera: Cecidomyiidae) attack. Journal of Economic Entomology 2006, 99:1842-1853.
    • (2006) Journal of Economic Entomology , vol.99 , pp. 1842-1853
    • Anderson, K.G.1    Harris, M.O.2
  • 2
    • 46249132987 scopus 로고    scopus 로고
    • Leaf growth signals the onset of effective plant resistance against Hessian fly larvae
    • Anderson K.G., Harris M.O. Leaf growth signals the onset of effective plant resistance against Hessian fly larvae. Entomologia Experimentalis et Applicata 2008, 128:184-195.
    • (2008) Entomologia Experimentalis et Applicata , vol.128 , pp. 184-195
    • Anderson, K.G.1    Harris, M.O.2
  • 3
    • 53149140277 scopus 로고    scopus 로고
    • Phylogenetics and temporal diversification of the earliest true flies (Insecta: Diptera) based on multiple nuclear genes
    • Bertone M.A., Courtney G.W., Wiegmann B.M. Phylogenetics and temporal diversification of the earliest true flies (Insecta: Diptera) based on multiple nuclear genes. Systematic Entomology 2008, 33:668-687.
    • (2008) Systematic Entomology , vol.33 , pp. 668-687
    • Bertone, M.A.1    Courtney, G.W.2    Wiegmann, B.M.3
  • 4
    • 1642499415 scopus 로고    scopus 로고
    • Exportin 5 is a RanGTP-dependent dsRNA-binding protein that mediates nuclear export of pre-miRNAs
    • Bohnsack M.T. Exportin 5 is a RanGTP-dependent dsRNA-binding protein that mediates nuclear export of pre-miRNAs. RNA 2004, 10:185-191.
    • (2004) RNA , vol.10 , pp. 185-191
    • Bohnsack, M.T.1
  • 8
    • 84867623737 scopus 로고    scopus 로고
    • Non-cell-autonomous RNA interference in mammalian cells: implications for in vivo cell-based RNAi delivery
    • Cohen H., Xiong M.P. Non-cell-autonomous RNA interference in mammalian cells: implications for in vivo cell-based RNAi delivery. Journal of RNAi and Gene Silencing 2011, 7:456-463.
    • (2011) Journal of RNAi and Gene Silencing , vol.7 , pp. 456-463
    • Cohen, H.1    Xiong, M.P.2
  • 9
    • 1242345210 scopus 로고    scopus 로고
    • A group of related cDNAs encoding secreted proteins from Hessian fly [Mayetiola destructor (Say)] salivary glands
    • Chen M.-S., Fellers J.P., Stuart J.J., Reese J.C., Liu X. A group of related cDNAs encoding secreted proteins from Hessian fly [Mayetiola destructor (Say)] salivary glands. Insect Molecular Biology 2004, 13:101-108.
    • (2004) Insect Molecular Biology , vol.13 , pp. 101-108
    • Chen, M.-S.1    Fellers, J.P.2    Stuart, J.J.3    Reese, J.C.4    Liu, X.5
  • 10
    • 38149006924 scopus 로고    scopus 로고
    • Analysis of transcripts and proteins expressed in the salivary glands of Hessian fly (Mayetiola destructor) larvae
    • Chen M.-S., Zhao H.-X., Zhu Y.C., Scheffler B., Liu X., Liu X. Analysis of transcripts and proteins expressed in the salivary glands of Hessian fly (Mayetiola destructor) larvae. Journal of Insect Physiology 2008, 54:1-16.
    • (2008) Journal of Insect Physiology , vol.54 , pp. 1-16
    • Chen, M.-S.1    Zhao, H.-X.2    Zhu, Y.C.3    Scheffler, B.4    Liu, X.5    Liu, X.6
  • 11
    • 77957115671 scopus 로고    scopus 로고
    • Unusual conservation among genes encoding small secreted salivary gland proteins from a gall midge. BMC Evolutionary Biology
    • Chen, M.-S., Liu, X., Yang, Z., Zhao, H., Shukle, R.H., Stuart, J.J., Hulbert, S., 2010. Unusual conservation among genes encoding small secreted salivary gland proteins from a gall midge. BMC Evolutionary Biology 10, 296 http://www.biomedcentral.com/1471-2148/10/296.
    • (2010) , vol.10 , Issue.296
    • Chen, M.-S.1    Liu, X.2    Yang, Z.3    Zhao, H.4    Shukle, R.H.5    Stuart, J.J.6    Hulbert, S.7
  • 13
    • 33750990797 scopus 로고    scopus 로고
    • DUF283 domain of Dicer proteins has a double-stranded RNA-binding fold
    • Dlakić M. DUF283 domain of Dicer proteins has a double-stranded RNA-binding fold. Bioinformatics 2006, 22:2711-2714.
    • (2006) Bioinformatics , vol.22 , pp. 2711-2714
    • Dlakić, M.1
  • 14
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
    • Fire A.Z., Xu S., Montgomery M.K., Kostas S.A., Driver S.E., Mello C.C. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 1998, 391:806-811.
    • (1998) Nature , vol.391 , pp. 806-811
    • Fire, A.Z.1    Xu, S.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5    Mello, C.C.6
  • 15
    • 0001377641 scopus 로고    scopus 로고
    • Sex-linked inheritance of virulence against wheat resistance gene H9 in the Hessian fly (Diptera: Cecidomyiidae)
    • Formusoh E.S., Hatchett J.H. Sex-linked inheritance of virulence against wheat resistance gene H9 in the Hessian fly (Diptera: Cecidomyiidae). Annals of the Entomological Society of America 1996, 89:428-434.
    • (1996) Annals of the Entomological Society of America , vol.89 , pp. 428-434
    • Formusoh, E.S.1    Hatchett, J.H.2
  • 18
    • 26944441255 scopus 로고    scopus 로고
    • Dicing and slicing: the core machinery of the RNA interference pathway
    • Hammond S.M. Dicing and slicing: the core machinery of the RNA interference pathway. Federation of European Biochemical Societies Letters 2005, 579:5822-5829.
    • (2005) Federation of European Biochemical Societies Letters , vol.579 , pp. 5822-5829
    • Hammond, S.M.1
  • 22
    • 0001592877 scopus 로고
    • Genetics of the ability of the Hessian fly, Mayetiola destructor, to survive on wheats having different genes for resistance
    • Hatchett J.H., Gallun R.L. Genetics of the ability of the Hessian fly, Mayetiola destructor, to survive on wheats having different genes for resistance. Annals of the Entomological Society of America 1970, 63:1400-1407.
    • (1970) Annals of the Entomological Society of America , vol.63 , pp. 1400-1407
    • Hatchett, J.H.1    Gallun, R.L.2
  • 23
    • 0034849408 scopus 로고    scopus 로고
    • MrBayes: Bayesian inference of phylogeny
    • Huelsenbeck J.P., Ronquist F. MrBayes: Bayesian inference of phylogeny. Bioinformatics 2001, 17:754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 24
    • 75749151616 scopus 로고    scopus 로고
    • Mechanisms of dsRNA uptake in insects and potential of RNAi for pest control: a review
    • Huvenne H., Smagghe G. Mechanisms of dsRNA uptake in insects and potential of RNAi for pest control: a review. Journal of Insect Physiology 2010, 56:227-235.
    • (2010) Journal of Insect Physiology , vol.56 , pp. 227-235
    • Huvenne, H.1    Smagghe, G.2
  • 31
    • 1842816517 scopus 로고    scopus 로고
    • Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways
    • Lee Y.S., Nakahara K., Pham J.W., Kim K., He Z., Sontheimer E.J., Carthew R.W. Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways. Cell 2004, 117:69-81.
    • (2004) Cell , vol.117 , pp. 69-81
    • Lee, Y.S.1    Nakahara, K.2    Pham, J.W.3    Kim, K.4    He, Z.5    Sontheimer, E.J.6    Carthew, R.W.7
  • 34
    • 80052578609 scopus 로고    scopus 로고
    • Retraction for Lipardi and Paterson, identification of an RNA-dependent RNA polymerase in Drosophila involved in RNAi and transposon suppression
    • Lipardi C., Paterson B.M. Retraction for Lipardi and Paterson, identification of an RNA-dependent RNA polymerase in Drosophila involved in RNAi and transposon suppression. Proceedings of the National Academy of Sciences of the United States of America 2011, 108:15010.
    • (2011) Proceedings of the National Academy of Sciences of the United States of America , vol.108 , pp. 15010
    • Lipardi, C.1    Paterson, B.M.2
  • 36
    • 2442679207 scopus 로고    scopus 로고
    • Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain
    • Ma J.-B., Ye K., Patel D.J. Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain. Nature 2004, 429:318-322.
    • (2004) Nature , vol.429 , pp. 318-322
    • Ma, J.-B.1    Ye, K.2    Patel, D.J.3
  • 38
    • 34248374277 scopus 로고    scopus 로고
    • A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action
    • Makarova K.S., Grishin N.V., Shabalina S.A., Wolf Y.I., Koonin E.V. A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. Biology Direct 2006, 16(1):7.
    • (2006) Biology Direct , vol.16 , Issue.1 , pp. 7
    • Makarova, K.S.1    Grishin, N.V.2    Shabalina, S.A.3    Wolf, Y.I.4    Koonin, E.V.5
  • 40
    • 4644223259 scopus 로고    scopus 로고
    • Mechanisms of gene silencing by double-stranded RNA
    • Meister G., Tuschl T. Mechanisms of gene silencing by double-stranded RNA. Nature 2004, 431:343-349.
    • (2004) Nature , vol.431 , pp. 343-349
    • Meister, G.1    Tuschl, T.2
  • 41
    • 0036337915 scopus 로고    scopus 로고
    • A genomic view of alternative splicing
    • Modrek B., Lee C. A genomic view of alternative splicing. Nature Genetics 2002, 30:13-19.
    • (2002) Nature Genetics , vol.30 , pp. 13-19
    • Modrek, B.1    Lee, C.2
  • 42
    • 0030203863 scopus 로고    scopus 로고
    • TREEVIEW: an application to display phylogenetic trees on personal computers
    • Page R. TREEVIEW: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 1996, 12:357-358.
    • (1996) Computer Applications in the Biosciences , vol.12 , pp. 357-358
    • Page, R.1
  • 44
    • 0002367035 scopus 로고    scopus 로고
    • Biology and genetics of the Hessian fly and resistance in wheat
    • Research Signpost, Scientific Information Guild, Trivandrum, India, K. Bondarie (Ed.)
    • Ratcliffe R.H., Hatchett J.H. Biology and genetics of the Hessian fly and resistance in wheat. New Developments in Entomology 1997, 47-56. Research Signpost, Scientific Information Guild, Trivandrum, India. K. Bondarie (Ed.).
    • (1997) New Developments in Entomology , pp. 47-56
    • Ratcliffe, R.H.1    Hatchett, J.H.2
  • 45
    • 84874455051 scopus 로고    scopus 로고
    • R Development Core Team, R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0 ().
    • R Development Core Team, 2009. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0 (). http://www.R-project.org.
    • (2009)
  • 47
    • 0037373298 scopus 로고    scopus 로고
    • Absence of transitive and systemic pathways allows cell-specific and isoform-specific RNAi in Drosophila
    • Roignant J.-Y. Absence of transitive and systemic pathways allows cell-specific and isoform-specific RNAi in Drosophila. RNA 2003, 9:299-308.
    • (2003) RNA , vol.9 , pp. 299-308
    • Roignant, J.-Y.1
  • 50
    • 33746608192 scopus 로고    scopus 로고
    • The endocytic pathway mediates cell entry of dsRNA to induce RNAi silencing
    • Saleh M., Rij R., Hekele A., Gillis A. The endocytic pathway mediates cell entry of dsRNA to induce RNAi silencing. Nature Cell Biology 2006, 8:793-802.
    • (2006) Nature Cell Biology , vol.8 , pp. 793-802
    • Saleh, M.1    Rij, R.2    Hekele, A.3    Gillis, A.4
  • 51
    • 22744454230 scopus 로고    scopus 로고
    • Processing of pre-microRNAs by the Dicer-1-Loquacious complex in Drosophila cells
    • Saito K., Ishizuka A., Siomi H., Siomi M.C. Processing of pre-microRNAs by the Dicer-1-Loquacious complex in Drosophila cells. PLoS Biology 2005, 3:235.
    • (2005) PLoS Biology , vol.3 , pp. 235
    • Saito, K.1    Ishizuka, A.2    Siomi, H.3    Siomi, M.C.4
  • 52
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 1987, 4:406-425.
    • (1987) Molecular Biology and Evolution , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 54
    • 0036535323 scopus 로고    scopus 로고
    • The expression of the let-7 small regulatory RNA is controlled by ecdysone during metamorphosis in Drosophila melanogaster
    • Sempere L.F., Dubrovsky E.B., Dubrovskaya V.A., Berger E.M., Ambros V. The expression of the let-7 small regulatory RNA is controlled by ecdysone during metamorphosis in Drosophila melanogaster. Developmental Biology 2002, 244:170-179.
    • (2002) Developmental Biology , vol.244 , pp. 170-179
    • Sempere, L.F.1    Dubrovsky, E.B.2    Dubrovskaya, V.A.3    Berger, E.M.4    Ambros, V.5
  • 55
    • 51449085579 scopus 로고    scopus 로고
    • Origins and evolution of eukaryotic RNA interference
    • Shabalina S. Origins and evolution of eukaryotic RNA interference. Trends in Ecology and Evolution 2008, 2008:578-587.
    • (2008) Trends in Ecology and Evolution , vol.2008 , pp. 578-587
    • Shabalina, S.1
  • 58
    • 0020947272 scopus 로고
    • Parsimony in systematics: philosophical issues
    • Sober E. Parsimony in systematics: philosophical issues. Annual Review of Ecology and Systematics 1983, 14:335-357.
    • (1983) Annual Review of Ecology and Systematics , vol.14 , pp. 335-357
    • Sober, E.1
  • 64
    • 23544438663 scopus 로고    scopus 로고
    • The ClustalX windows interface. Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The ClustalX windows interface. Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 1997, 22:4673-4680.
    • (1997) Nucleic Acids Research , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 67
    • 41949104147 scopus 로고    scopus 로고
    • Exploring systemic RNA interference in insects: a genome-wide survey for RNAi genes in Tribolium
    • R10
    • Tomoyasu, Y., Miller, S.C., Tomita, S., Schoppmeier, M., Grossmann, D., Bucher, G., 2008. Exploring systemic RNA interference in insects: a genome-wide survey for RNAi genes in Tribolium. Genome Biology 9 (1), R10 http://genomebiology.com/2008/9/R10.
    • (2008) Genome Biology , vol.9 , Issue.1
    • Tomoyasu, Y.1    Miller, S.C.2    Tomita, S.3    Schoppmeier, M.4    Grossmann, D.5    Bucher, G.6
  • 68
    • 8544283793 scopus 로고    scopus 로고
    • Larval RNAi in Tribolium (Coleoptera) for analyzing adult development
    • Tomoyasu Y., Denell R.E. Larval RNAi in Tribolium (Coleoptera) for analyzing adult development. Development Genes and Evolution 2004, 214:575-578.
    • (2004) Development Genes and Evolution , vol.214 , pp. 575-578
    • Tomoyasu, Y.1    Denell, R.E.2
  • 72
    • 35349023128 scopus 로고    scopus 로고
    • Functional anatomy of the Drosophila microRNA-generating enzyme
    • Ye X., Paroo Z., Liu Q. Functional anatomy of the Drosophila microRNA-generating enzyme. The Journal of Biological Chemistry 2007, 282:28373-28378.
    • (2007) The Journal of Biological Chemistry , vol.282 , pp. 28373-28378
    • Ye, X.1    Paroo, Z.2    Liu, Q.3
  • 74
    • 0030944990 scopus 로고    scopus 로고
    • Genetics of virulence in the Hessian fly to resistance gene H13 in wheat
    • Zantoko L., Shukle R.H. Genetics of virulence in the Hessian fly to resistance gene H13 in wheat. Journal of Heredity 1997, 88:120-123.
    • (1997) Journal of Heredity , vol.88 , pp. 120-123
    • Zantoko, L.1    Shukle, R.H.2


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