Erratum: Identification of an RNA-dependent RNA polymerase in Drosophila involved in RNAi and transposon suppression (Proceedings of the National Academy of Sciences of the United States of America (2009) 106, (15645-15650) DOI: 10.1073/pnas.0904984106);Identification of an RNA-dependent RNA polymerase in Drosophila involved in RNAi and transposon suppression

Proceedings of the National Academy of Sciences of the United States of America

Volumn 106, Issue 37, 2009, Pages 15645-15650

  Lipardi, Concetta ^a   Paterson, Bruce M ^a  

^a NATIONAL CANCER INSTITUTE   (United States)

Author keywords

Cellular stress; Elongator; Genome defence

Indexed keywords

COMPLEMENTARY RNA; DCR 2 PROTEIN; DROSOPHILA ELP1 PROTEIN; DROSOPHILA PROTEIN; MICRORNA; PROTEIN; RECOMBINANT PROTEIN; RNA; RNA DIRECTED RNA POLYMERASE; RNA POLYMERASE II; SMALL INTERFERING RNA; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL CELL; CONTROLLED STUDY; DROSOPHILA; EMBRYO; ENZYME ACTIVITY; ESCHERICHIA COLI; EUKARYOTE; GENE REPRESSION; GENOME; LARVA; NONHUMAN; PRIORITY JOURNAL; PROTEIN DEPLETION; RNA INTERFERENCE; RNA SYNTHESIS; STEADY STATE; TRANSPOSON;

ESCHERICHIA COLI; EUKARYOTA;

EID: 70349453559     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1111383108     Document Type: Erratum

References (40)

1. Tijsterman M, Ketting RF, Plasterk RH (2002) The genetics of RNA silencing. Annu Rev Genet 36:489-519.
2. Baulcombe DC (2007) Molecular biology. Amplified silencing. Science 315:199-200.
3. Brennecke J, et al. (2007) Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell 128:1089-1103. (Pubitemid 46427877)
4. Watanabe T, et al. (2008) Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes. Nature 453:539-543. (Pubitemid 351733315)
5. Meister G, et al. (2004) Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs. Mol Cell 15:185-197. (Pubitemid 38950966)
6. Saleh MC, et al. (2009) Antiviral immunity in Drosophila requires systemic RNA interference spread. Nature 458:346-350.
7. Bergstrom CT, McKittrick E, Antia R (2003) Mathematical models of RNA silencing: Unidirectional amplification limits accidental self-directed reactions. Proc Natl Acad Sci USA 100:11511-11516. (Pubitemid 37205967)
8. Lipardi C, Baek HJ, Wei Q, Paterson BM (2005) Analysis of short interfering RNA function in RNA interference by using Drosophila embryo extracts and schneider cells. Methods Enzymol 392:351-371. (Pubitemid 40092525)
9. Lipardi C, Wei Q, Paterson BM (2001) RNAi as random degradative PCR: siRNA primers convert mRNA into dsRNAs that are degraded to generate new siRNAs. Cell 107:297-307. (Pubitemid 33049974)
10. Pal-Bhadra M, Bhadra U, Birchler JA (2002) RNAi related mechanisms affect both transcriptional and posttranscriptional transgene silencing in Drosophila. Mol Cell 9:315-327. (Pubitemid 34195557)
11. Chung WJ, Okamura K, Martin R, Lai EC (2008) Endogenous RNA interference provides a somatic defense against Drosophila transposons. Curr Biol 18:795-802.
12. Ghildiyal M, et al. (2008) Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells. Science 320:1077-1081. (Pubitemid 351929549)
13. Ilyin YV, Chmeliauskaite VG, Georgiev GP (1980) Double-stranded sequences in RNA of Drosophila melanogaster: Relation to mobile dispersed genes. Nucleic Acids Res 8:3439-3457. (Pubitemid 10020369)
14. Dietzl G, et al. (2007) A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila. Nature 448:151-156. (Pubitemid 47067374)
15. Friedman A, Perrimon N (2006) A functional RNAi screen for regulators of receptor tyrosine kinase and ERK signalling. Nature 444:230-234. (Pubitemid 44722065)
16. Svejstrup JQ (2007) Elongator complex:Howmanyroles does it play? Curr Opin Cell Biol 19:331-336.
17. Lee DF, Chen CC, Hsu TA, Juang JL (2000) A baculovirus superinfection system: Efficient vehicle for gene transfer into Drosophila S2 cells. J Virol 74:11873-11880.
18. Sigova A, Rhind N, Zamore PD (2004) A single Argonaute protein mediates both transcriptional and posttranscriptional silencing in Schizosaccharomyces pombe. Genes Dev 18:2359-2367. (Pubitemid 39304683)
19. Jaskiewicz L, Filipowicz W (2008) Role of Dicer in posttranscriptional RNA silencing. Curr Top Microbiol Immunol 320:77-97.
20. Makeyev EV, Bamford DH (2002) Cellular RNA-dependent RNA polymerase involved in posttranscriptional gene silencing has two distinct activity modes. Mol Cell 10:1417-1427.
21. Sugiyama T, Cam H, Verdel A, Moazed D, Grewal SI (2005) RNA-dependent RNA polymerase is an essential component of a self-enforcing loop coupling heterochromatin assembly to siRNA production. Proc Natl Acad Sci USA 102:152-157. (Pubitemid 40094444)
22. Tolia NH, Joshua-Tor L (2006) Strategies for protein coexpression in Escherichia coli. Nat Methods 3:55-64. (Pubitemid 43135350)
23. Kim JH, Lane WS, Reinberg D (2002) Human Elongator facilitates RNA polymerase II transcription through chromatin. Proc Natl Acad Sci USA 99:1241-1246.
24. Winkler GS, et al. (2001) RNA polymerase II elongator holoenzyme is composed of two discrete subcomplexes. J Biol Chem 276:32743-32749. (Pubitemid 37384719)
25. Johansen LD, et al. (2008) IKAP localizes to membrane ruffles with filamin A and regulates actin cytoskeleton organization and cell migration. J Cell Sci 121:854-864.
26. Holmberg C, et al. (2002) A novel specific role for I kappa B kinase complex-associated protein in cytosolic stress signaling. J Biol Chem 277:31918-31928. (Pubitemid 34969000)
27. Colmenares SU, Buker SM, Buhler M, Dlakic M, Moazed D (2007) Coupling of doublestranded RNA synthesis and siRNA generation in fission yeast RNAi. Mol Cell 27:449-461. (Pubitemid 47126941)
28. Lee SR, Collins K (2007) Physical and functional coupling of RNA-dependent RNA polymeraseandDicer in the biogenesis of endogenous siRNAs. Nat Struct Mol Biol 14:604-610.
29. Obbard DJ, Finnegan DJ (2008) RNA interference: Endogenous siRNAs derived from transposable elements. Curr Biol 18:R561-563.
30. Kim VN (2005) Small RNAs: Classification, biogenesis, and function. Mol Cells 19:1-15.
31. Girard A, Hannon GJ (2008) Conserved themes in small-RNA-mediated transposon control. Trends Cell Biol 18:136-148.
32. Rehwinkel J, et al. (2006) Genome-wide analysis of mRNAs regulated by Drosha and Argonaute proteins in Drosophila melanogaster. Mol Cell Biol 26:2965-2975.
33. Hamilton AJ, Baulcombe DC (1999) A species of small antisense RNA in posttranscriptional gene silencing in plants. Science 286:950-952. (Pubitemid 33594031)
34. Slaugenhaupt SA, et al. (2001) Tissue-specific expression of a splicing mutation in the IKBKAP gene causes familial dysautonomia. Am J Hum Genet 68:598-605.
35. Iyer LM, Koonin EV, Aravind L (2003) Evolutionary connection between the catalytic subunits of DNA-dependent RNA polymerases and eukaryotic RNA-dependent RNA polymerases and the origin of RNA polymerases. BMC Struct Biol 3:1.
36. Roguev A, et al. (2008) Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast. Science 322:405-410.
37. Wynshaw-Boris A (2009) Elongator bridges tubulin acetylation and neuronal migration. Cell 136:393-394.
38. Roignant JY, et al. (2003) Absence of transitive and systemic pathways allows cellspecific and isoform-specific RNAi in Drosophila. RNA 9:299-308.
39. Dzitoyeva S, Dimitrijevic N, Manev H (2001) Intra-abdominal injection of double-stranded RNA into anesthetized adult Drosophila triggers RNA interference in the central nervous system. Mol Psychiatry 6:665-670. (Pubitemid 33020585)
40. Goto A, Blandin S, Royet J, Reichhart JM, Levashina EA (2003) Silencing of Toll pathway components by direct injection of double-stranded RNA into Drosophila adult flies. Nucleic Acids Res 31:6619-6623. (Pubitemid 37508768)